Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF231

Experiment: LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF230 and GFF231 are separated by 107 nucleotidesGFF231 and GFF232 are separated by 368 nucleotides GFF230 - Adenylate cyclase (EC 4.6.1.1), at 5,201 to 7,747 GFF230 GFF231 - Putative inner membrane protein, at 7,855 to 8,208 GFF231 GFF232 - Putative inner membrane protein, at 8,577 to 8,936 GFF232 Position (kb) 7 8 9Strain fitness (log2 ratio) -2 -1 0 1 2at 6.879 kb on - strand, within GFF230at 6.905 kb on - strand, within GFF230at 6.972 kb on + strand, within GFF230at 6.991 kb on - strand, within GFF230at 6.993 kb on - strand, within GFF230at 7.191 kb on + strand, within GFF230at 7.191 kb on + strand, within GFF230at 7.192 kb on - strand, within GFF230at 7.473 kb on - strand, within GFF230at 7.503 kb on + strandat 7.522 kb on + strandat 7.523 kb on - strandat 7.587 kb on - strandat 7.610 kb on - strandat 7.796 kb on - strandat 7.918 kb on - strand, within GFF231at 7.928 kb on + strand, within GFF231at 7.928 kb on + strand, within GFF231at 7.928 kb on + strand, within GFF231at 8.098 kb on + strand, within GFF231at 8.540 kb on + strandat 8.653 kb on + strand, within GFF232at 8.653 kb on + strand, within GFF232at 8.660 kb on - strand, within GFF232at 8.726 kb on + strand, within GFF232at 9.020 kb on + strandat 9.070 kb on + strandat 9.171 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI
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6,879 - GFF230 0.66 -0.8
6,905 - GFF230 0.67 +0.2
6,972 + GFF230 0.70 +1.2
6,991 - GFF230 0.70 +0.2
6,993 - GFF230 0.70 +1.6
7,191 + GFF230 0.78 +0.5
7,191 + GFF230 0.78 +1.8
7,192 - GFF230 0.78 -0.2
7,473 - GFF230 0.89 +2.5
7,503 + +2.5
7,522 + +0.6
7,523 - +1.2
7,587 - +1.5
7,610 - +1.6
7,796 - +0.1
7,918 - GFF231 0.18 -1.0
7,928 + GFF231 0.21 +0.3
7,928 + GFF231 0.21 +0.3
7,928 + GFF231 0.21 -0.1
8,098 + GFF231 0.69 -2.2
8,540 + -0.5
8,653 + GFF232 0.21 +0.2
8,653 + GFF232 0.21 -0.1
8,660 - GFF232 0.23 +0.2
8,726 + GFF232 0.41 -0.1
9,020 + +0.1
9,070 + -0.1
9,171 + -0.1

Or see this region's nucleotide sequence