Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1979

Experiment: LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1978 and GFF1979 are separated by 52 nucleotidesGFF1979 and GFF1984 are separated by 190 nucleotidesGFF1984 and GFF1985 are separated by 42 nucleotidesGFF1985 and GFF1986 are separated by 42 nucleotidesGFF1986 and GFF1987 are separated by 42 nucleotidesGFF1987 and GFF1980 are separated by 236 nucleotides GFF1978 - Nucleoside permease NupC, at 171,693 to 172,895 GFF1978 GFF1979 - FIG00638309: hypothetical protein, at 172,948 to 175,137 GFF1979 GFF1984 - tRNA-Ala-GGC, at 175,328 to 175,403 GFF1984 GFF1985 - tRNA-Ala-GGC, at 175,446 to 175,521 GFF1985 GFF1986 - tRNA-Ala-GGC, at 175,564 to 175,639 GFF1986 GFF1987 - tRNA-Ala-GGC, at 175,682 to 175,757 GFF1987 GFF1980 - Putative negative regulator, at 175,994 to 176,341 GFF1980 Position (kb) 172 173 174 175 176Strain fitness (log2 ratio) -3 -2 -1 0 1at 172.191 kb on + strand, within GFF1978at 172.191 kb on + strand, within GFF1978at 172.192 kb on - strand, within GFF1978at 172.247 kb on + strand, within GFF1978at 172.248 kb on - strand, within GFF1978at 172.269 kb on + strand, within GFF1978at 172.270 kb on - strand, within GFF1978at 172.270 kb on - strand, within GFF1978at 172.335 kb on + strand, within GFF1978at 172.335 kb on + strand, within GFF1978at 172.594 kb on + strand, within GFF1978at 172.595 kb on - strand, within GFF1978at 172.625 kb on + strand, within GFF1978at 172.626 kb on - strand, within GFF1978at 172.626 kb on - strand, within GFF1978at 172.718 kb on + strand, within GFF1978at 172.862 kb on - strandat 172.894 kb on - strandat 172.983 kb on - strandat 173.015 kb on - strandat 173.244 kb on + strand, within GFF1979at 173.358 kb on + strand, within GFF1979at 173.503 kb on - strand, within GFF1979at 173.582 kb on + strand, within GFF1979at 173.764 kb on + strand, within GFF1979at 173.871 kb on + strand, within GFF1979at 173.891 kb on + strand, within GFF1979at 173.891 kb on + strand, within GFF1979at 173.891 kb on + strand, within GFF1979at 173.892 kb on - strand, within GFF1979at 173.892 kb on - strand, within GFF1979at 173.892 kb on - strand, within GFF1979at 173.936 kb on - strand, within GFF1979at 174.073 kb on + strand, within GFF1979at 174.074 kb on - strand, within GFF1979at 174.258 kb on + strand, within GFF1979at 174.308 kb on + strand, within GFF1979at 174.312 kb on + strand, within GFF1979at 174.313 kb on - strand, within GFF1979at 174.426 kb on - strand, within GFF1979at 174.546 kb on + strand, within GFF1979at 174.552 kb on + strand, within GFF1979at 174.569 kb on - strand, within GFF1979at 174.701 kb on + strand, within GFF1979at 174.790 kb on + strand, within GFF1979at 174.827 kb on - strand, within GFF1979at 175.014 kb on + strandat 175.456 kb on - strand, within GFF1985at 175.456 kb on - strand, within GFF1985at 175.979 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI
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172,191 + GFF1978 0.41 +0.2
172,191 + GFF1978 0.41 +1.4
172,192 - GFF1978 0.41 +0.9
172,247 + GFF1978 0.46 +0.5
172,248 - GFF1978 0.46 +1.3
172,269 + GFF1978 0.48 +1.1
172,270 - GFF1978 0.48 +1.1
172,270 - GFF1978 0.48 +1.4
172,335 + GFF1978 0.53 +1.2
172,335 + GFF1978 0.53 +0.3
172,594 + GFF1978 0.75 +1.2
172,595 - GFF1978 0.75 +0.3
172,625 + GFF1978 0.77 +1.0
172,626 - GFF1978 0.78 +1.2
172,626 - GFF1978 0.78 +0.5
172,718 + GFF1978 0.85 +1.0
172,862 - +1.1
172,894 - -0.5
172,983 - -0.0
173,015 - -0.1
173,244 + GFF1979 0.14 -1.1
173,358 + GFF1979 0.19 +1.5
173,503 - GFF1979 0.25 -2.0
173,582 + GFF1979 0.29 +0.2
173,764 + GFF1979 0.37 +0.1
173,871 + GFF1979 0.42 +0.1
173,891 + GFF1979 0.43 -0.3
173,891 + GFF1979 0.43 +0.1
173,891 + GFF1979 0.43 -0.9
173,892 - GFF1979 0.43 +0.4
173,892 - GFF1979 0.43 +0.1
173,892 - GFF1979 0.43 +0.6
173,936 - GFF1979 0.45 -0.2
174,073 + GFF1979 0.51 -0.1
174,074 - GFF1979 0.51 +0.1
174,258 + GFF1979 0.60 -0.3
174,308 + GFF1979 0.62 +1.1
174,312 + GFF1979 0.62 +0.1
174,313 - GFF1979 0.62 -0.3
174,426 - GFF1979 0.67 +0.5
174,546 + GFF1979 0.73 -1.0
174,552 + GFF1979 0.73 -0.5
174,569 - GFF1979 0.74 +0.2
174,701 + GFF1979 0.80 +1.4
174,790 + GFF1979 0.84 +0.8
174,827 - GFF1979 0.86 +0.3
175,014 + +0.2
175,456 - GFF1985 0.13 +0.2
175,456 - GFF1985 0.13 +1.0
175,979 - -2.8

Or see this region's nucleotide sequence