Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1703

Experiment: LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1702 and GFF1703 are separated by 11 nucleotidesGFF1703 and GFF1704 overlap by 35 nucleotidesGFF1704 and GFF1705 are separated by 12 nucleotides GFF1702 - Transcriptional regulator, GntR family, at 188 to 892 GFF1702 GFF1703 - Permeases of the major facilitator superfamily, at 904 to 2,331 GFF1703 GFF1704 - Ribose operon repressor, at 2,297 to 3,286 GFF1704 GFF1705 - Ribokinase (EC 2.7.1.15), at 3,299 to 4,228 GFF1705 Position (kb) 0 1 2 3Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 0.099 kb on + strandat 0.151 kb on + strandat 0.154 kb on + strandat 0.154 kb on + strandat 0.154 kb on + strandat 0.234 kb on - strandat 0.267 kb on + strand, within GFF1702at 0.267 kb on + strand, within GFF1702at 0.268 kb on - strand, within GFF1702at 0.278 kb on + strand, within GFF1702at 0.326 kb on + strand, within GFF1702at 0.382 kb on + strand, within GFF1702at 0.382 kb on + strand, within GFF1702at 0.391 kb on - strand, within GFF1702at 0.520 kb on + strand, within GFF1702at 0.521 kb on - strand, within GFF1702at 0.676 kb on + strand, within GFF1702at 0.677 kb on - strand, within GFF1702at 0.677 kb on - strand, within GFF1702at 0.677 kb on - strand, within GFF1702at 0.680 kb on + strand, within GFF1702at 0.723 kb on + strand, within GFF1702at 0.746 kb on + strand, within GFF1702at 0.747 kb on - strand, within GFF1702at 0.747 kb on - strand, within GFF1702at 0.764 kb on + strand, within GFF1702at 0.777 kb on + strand, within GFF1702at 0.864 kb on + strandat 0.886 kb on + strandat 1.059 kb on + strand, within GFF1703at 1.060 kb on - strand, within GFF1703at 1.067 kb on - strand, within GFF1703at 1.083 kb on + strand, within GFF1703at 1.083 kb on + strand, within GFF1703at 1.084 kb on - strand, within GFF1703at 1.088 kb on + strand, within GFF1703at 1.152 kb on - strand, within GFF1703at 1.162 kb on - strand, within GFF1703at 1.226 kb on + strand, within GFF1703at 1.226 kb on + strand, within GFF1703at 1.226 kb on + strand, within GFF1703at 1.226 kb on + strand, within GFF1703at 1.227 kb on - strand, within GFF1703at 1.227 kb on - strand, within GFF1703at 1.274 kb on + strand, within GFF1703at 1.340 kb on + strand, within GFF1703at 1.374 kb on - strand, within GFF1703at 1.414 kb on - strand, within GFF1703at 1.416 kb on + strand, within GFF1703at 1.444 kb on + strand, within GFF1703at 1.445 kb on - strand, within GFF1703at 1.445 kb on - strand, within GFF1703at 1.445 kb on - strand, within GFF1703at 1.445 kb on - strand, within GFF1703at 1.457 kb on - strand, within GFF1703at 1.457 kb on - strand, within GFF1703at 1.457 kb on - strand, within GFF1703at 1.457 kb on - strand, within GFF1703at 1.459 kb on - strand, within GFF1703at 1.609 kb on - strand, within GFF1703at 1.619 kb on + strand, within GFF1703at 1.664 kb on + strand, within GFF1703at 1.665 kb on - strand, within GFF1703at 1.836 kb on + strand, within GFF1703at 1.837 kb on - strand, within GFF1703at 1.837 kb on - strand, within GFF1703at 1.837 kb on - strand, within GFF1703at 1.856 kb on + strand, within GFF1703at 1.868 kb on + strand, within GFF1703at 1.868 kb on + strand, within GFF1703at 1.915 kb on - strand, within GFF1703at 1.915 kb on - strand, within GFF1703at 1.917 kb on - strand, within GFF1703at 1.986 kb on - strand, within GFF1703at 2.031 kb on + strand, within GFF1703at 2.148 kb on + strand, within GFF1703at 2.148 kb on + strand, within GFF1703at 2.148 kb on + strand, within GFF1703at 2.153 kb on - strand, within GFF1703at 2.195 kb on - strandat 2.195 kb on - strandat 2.195 kb on - strandat 2.196 kb on + strandat 2.196 kb on + strandat 2.197 kb on - strandat 2.197 kb on - strandat 2.197 kb on - strandat 2.244 kb on + strandat 2.252 kb on + strandat 2.253 kb on - strandat 2.293 kb on - strandat 2.484 kb on - strand, within GFF1704at 2.520 kb on - strand, within GFF1704at 2.650 kb on - strand, within GFF1704at 2.650 kb on - strand, within GFF1704at 2.744 kb on - strand, within GFF1704at 2.744 kb on - strand, within GFF1704at 2.778 kb on + strand, within GFF1704at 2.812 kb on + strand, within GFF1704at 2.813 kb on - strand, within GFF1704at 2.878 kb on + strand, within GFF1704at 3.025 kb on + strand, within GFF1704at 3.075 kb on + strand, within GFF1704at 3.102 kb on - strand, within GFF1704at 3.102 kb on - strand, within GFF1704at 3.102 kb on - strand, within GFF1704at 3.102 kb on - strand, within GFF1704at 3.128 kb on + strand, within GFF1704at 3.162 kb on + strand, within GFF1704at 3.286 kb on + strandat 3.286 kb on + strandat 3.287 kb on - strandat 3.289 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI
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99 + -6.1
151 + -4.9
154 + -5.7
154 + -6.1
154 + -4.5
234 - +0.9
267 + GFF1702 0.11 +0.3
267 + GFF1702 0.11 +0.9
268 - GFF1702 0.11 +0.2
278 + GFF1702 0.13 +0.8
326 + GFF1702 0.20 +1.0
382 + GFF1702 0.28 +0.7
382 + GFF1702 0.28 +1.9
391 - GFF1702 0.29 +0.9
520 + GFF1702 0.47 +0.4
521 - GFF1702 0.47 +1.1
676 + GFF1702 0.69 +1.0
677 - GFF1702 0.69 +0.8
677 - GFF1702 0.69 +1.0
677 - GFF1702 0.69 +0.8
680 + GFF1702 0.70 +1.0
723 + GFF1702 0.76 +0.7
746 + GFF1702 0.79 +1.1
747 - GFF1702 0.79 +0.7
747 - GFF1702 0.79 +0.8
764 + GFF1702 0.82 +0.4
777 + GFF1702 0.84 +0.5
864 + -0.0
886 + +0.2
1,059 + GFF1703 0.11 +0.3
1,060 - GFF1703 0.11 -1.1
1,067 - GFF1703 0.11 +0.1
1,083 + GFF1703 0.13 -1.2
1,083 + GFF1703 0.13 -0.4
1,084 - GFF1703 0.13 +0.6
1,088 + GFF1703 0.13 -0.5
1,152 - GFF1703 0.17 +0.5
1,162 - GFF1703 0.18 -0.2
1,226 + GFF1703 0.23 +1.4
1,226 + GFF1703 0.23 +0.3
1,226 + GFF1703 0.23 +0.2
1,226 + GFF1703 0.23 -0.2
1,227 - GFF1703 0.23 -0.6
1,227 - GFF1703 0.23 +0.1
1,274 + GFF1703 0.26 +0.5
1,340 + GFF1703 0.31 +0.3
1,374 - GFF1703 0.33 +0.5
1,414 - GFF1703 0.36 +0.4
1,416 + GFF1703 0.36 -0.9
1,444 + GFF1703 0.38 +0.1
1,445 - GFF1703 0.38 -0.1
1,445 - GFF1703 0.38 +0.3
1,445 - GFF1703 0.38 +0.8
1,445 - GFF1703 0.38 +0.1
1,457 - GFF1703 0.39 +0.6
1,457 - GFF1703 0.39 -1.4
1,457 - GFF1703 0.39 +0.3
1,457 - GFF1703 0.39 -0.8
1,459 - GFF1703 0.39 +0.3
1,609 - GFF1703 0.49 -0.3
1,619 + GFF1703 0.50 -0.8
1,664 + GFF1703 0.53 +0.8
1,665 - GFF1703 0.53 +0.5
1,836 + GFF1703 0.65 +0.6
1,837 - GFF1703 0.65 +0.1
1,837 - GFF1703 0.65 -0.9
1,837 - GFF1703 0.65 -0.4
1,856 + GFF1703 0.67 +0.1
1,868 + GFF1703 0.68 +0.2
1,868 + GFF1703 0.68 +0.1
1,915 - GFF1703 0.71 +1.4
1,915 - GFF1703 0.71 +0.2
1,917 - GFF1703 0.71 -0.1
1,986 - GFF1703 0.76 +1.6
2,031 + GFF1703 0.79 -0.0
2,148 + GFF1703 0.87 +0.1
2,148 + GFF1703 0.87 +0.1
2,148 + GFF1703 0.87 +0.8
2,153 - GFF1703 0.87 -0.2
2,195 - -0.0
2,195 - -0.2
2,195 - -0.3
2,196 + +0.2
2,196 + +0.5
2,197 - +0.3
2,197 - -0.2
2,197 - +0.5
2,244 + -0.7
2,252 + -0.0
2,253 - -0.6
2,293 - +1.2
2,484 - GFF1704 0.19 -1.3
2,520 - GFF1704 0.23 -1.2
2,650 - GFF1704 0.36 -0.5
2,650 - GFF1704 0.36 -0.9
2,744 - GFF1704 0.45 +0.4
2,744 - GFF1704 0.45 -0.4
2,778 + GFF1704 0.49 +0.1
2,812 + GFF1704 0.52 -0.8
2,813 - GFF1704 0.52 -0.4
2,878 + GFF1704 0.59 -0.8
3,025 + GFF1704 0.74 -0.6
3,075 + GFF1704 0.79 -0.7
3,102 - GFF1704 0.81 -0.7
3,102 - GFF1704 0.81 -0.2
3,102 - GFF1704 0.81 -0.1
3,102 - GFF1704 0.81 -0.7
3,128 + GFF1704 0.84 -0.5
3,162 + GFF1704 0.87 -2.1
3,286 + -0.9
3,286 + +0.3
3,287 - -0.1
3,289 + -2.7

Or see this region's nucleotide sequence