Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1060

Experiment: LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1059 and GFF1060 are separated by 208 nucleotidesGFF1060 and GFF1061 are separated by 57 nucleotidesGFF1061 and GFF1062 are separated by 101 nucleotides GFF1059 - ABC transporter, ATP-binding protein, at 240,511 to 242,178 GFF1059 GFF1060 - Soluble lytic murein transglycosylase precursor (EC 3.2.1.-), at 242,387 to 244,324 GFF1060 GFF1061 - Transcriptional repressor protein TrpR, at 244,382 to 244,708 GFF1061 GFF1062 - Inosine/xanthosine triphosphatase (EC 3.6.1.-), at 244,810 to 245,325 GFF1062 Position (kb) 242 243 244 245Strain fitness (log2 ratio) -2 -1 0 1 2 3at 241.448 kb on + strand, within GFF1059at 241.448 kb on + strand, within GFF1059at 241.448 kb on + strand, within GFF1059at 241.448 kb on + strand, within GFF1059at 241.468 kb on - strand, within GFF1059at 241.521 kb on - strand, within GFF1059at 241.533 kb on + strand, within GFF1059at 241.533 kb on + strand, within GFF1059at 241.764 kb on + strand, within GFF1059at 241.847 kb on + strand, within GFF1059at 241.940 kb on - strand, within GFF1059at 242.041 kb on - strandat 242.118 kb on + strandat 242.194 kb on + strandat 242.200 kb on + strandat 242.215 kb on + strandat 242.216 kb on - strandat 242.252 kb on + strandat 242.281 kb on + strandat 242.282 kb on - strandat 242.433 kb on + strandat 242.433 kb on + strandat 242.506 kb on + strandat 242.541 kb on + strandat 242.542 kb on - strandat 242.542 kb on - strandat 242.786 kb on - strand, within GFF1060at 242.789 kb on + strand, within GFF1060at 242.790 kb on - strand, within GFF1060at 242.790 kb on - strand, within GFF1060at 242.936 kb on + strand, within GFF1060at 242.947 kb on + strand, within GFF1060at 242.974 kb on + strand, within GFF1060at 243.017 kb on + strand, within GFF1060at 243.052 kb on + strand, within GFF1060at 243.304 kb on + strand, within GFF1060at 243.382 kb on + strand, within GFF1060at 243.502 kb on - strand, within GFF1060at 243.645 kb on - strand, within GFF1060at 243.827 kb on - strand, within GFF1060at 243.845 kb on + strand, within GFF1060at 243.875 kb on + strand, within GFF1060at 243.876 kb on - strand, within GFF1060at 243.876 kb on - strand, within GFF1060at 243.959 kb on - strand, within GFF1060at 244.008 kb on - strand, within GFF1060at 244.064 kb on + strand, within GFF1060at 244.073 kb on + strand, within GFF1060at 244.080 kb on - strand, within GFF1060at 244.080 kb on - strand, within GFF1060at 244.080 kb on - strand, within GFF1060at 244.124 kb on - strand, within GFF1060at 244.247 kb on + strandat 244.256 kb on + strandat 244.290 kb on + strandat 244.336 kb on + strandat 244.337 kb on - strandat 244.337 kb on - strandat 244.376 kb on + strandat 244.426 kb on + strand, within GFF1061at 244.455 kb on + strand, within GFF1061at 244.495 kb on - strand, within GFF1061at 244.552 kb on + strand, within GFF1061at 244.553 kb on - strand, within GFF1061at 244.718 kb on - strandat 244.796 kb on + strandat 244.797 kb on - strandat 244.865 kb on + strand, within GFF1062at 244.938 kb on + strand, within GFF1062at 244.938 kb on + strand, within GFF1062at 244.938 kb on + strand, within GFF1062at 245.146 kb on - strand, within GFF1062at 245.230 kb on - strand, within GFF1062at 245.233 kb on - strand, within GFF1062

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI
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241,448 + GFF1059 0.56 +2.8
241,448 + GFF1059 0.56 +2.3
241,448 + GFF1059 0.56 +2.8
241,448 + GFF1059 0.56 +2.4
241,468 - GFF1059 0.57 +2.7
241,521 - GFF1059 0.61 +2.4
241,533 + GFF1059 0.61 +2.8
241,533 + GFF1059 0.61 +2.3
241,764 + GFF1059 0.75 +2.5
241,847 + GFF1059 0.80 +2.6
241,940 - GFF1059 0.86 +2.8
242,041 - +2.3
242,118 + +3.6
242,194 + +2.9
242,200 + +2.7
242,215 + +2.6
242,216 - +1.7
242,252 + +2.1
242,281 + -0.8
242,282 - -0.7
242,433 + +1.1
242,433 + -0.6
242,506 + -1.9
242,541 + -0.1
242,542 - +1.2
242,542 - -0.4
242,786 - GFF1060 0.21 -0.7
242,789 + GFF1060 0.21 -0.2
242,790 - GFF1060 0.21 -0.4
242,790 - GFF1060 0.21 +0.3
242,936 + GFF1060 0.28 -0.9
242,947 + GFF1060 0.29 -1.4
242,974 + GFF1060 0.30 -0.3
243,017 + GFF1060 0.33 -0.5
243,052 + GFF1060 0.34 -0.6
243,304 + GFF1060 0.47 -0.6
243,382 + GFF1060 0.51 -0.8
243,502 - GFF1060 0.58 +1.9
243,645 - GFF1060 0.65 +0.1
243,827 - GFF1060 0.74 -0.6
243,845 + GFF1060 0.75 -0.5
243,875 + GFF1060 0.77 -0.7
243,876 - GFF1060 0.77 -0.1
243,876 - GFF1060 0.77 -0.6
243,959 - GFF1060 0.81 -2.2
244,008 - GFF1060 0.84 -0.5
244,064 + GFF1060 0.87 +0.5
244,073 + GFF1060 0.87 -1.0
244,080 - GFF1060 0.87 -0.0
244,080 - GFF1060 0.87 -1.4
244,080 - GFF1060 0.87 -1.6
244,124 - GFF1060 0.90 +0.1
244,247 + -1.2
244,256 + -1.6
244,290 + -1.0
244,336 + -1.1
244,337 - -0.3
244,337 - +0.4
244,376 + -0.0
244,426 + GFF1061 0.13 +0.3
244,455 + GFF1061 0.22 +0.5
244,495 - GFF1061 0.35 +1.5
244,552 + GFF1061 0.52 +0.8
244,553 - GFF1061 0.52 +0.7
244,718 - -0.1
244,796 + -0.0
244,797 - -0.2
244,865 + GFF1062 0.11 -0.9
244,938 + GFF1062 0.25 +0.1
244,938 + GFF1062 0.25 +1.0
244,938 + GFF1062 0.25 +0.7
245,146 - GFF1062 0.65 +0.4
245,230 - GFF1062 0.81 -1.0
245,233 - GFF1062 0.82 +1.2

Or see this region's nucleotide sequence