Experiment: LB_plus_SM_buffer with 6H2_phage 0.5 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF858 and GFF859 are separated by 49 nucleotides GFF859 and GFF860 are separated by 219 nucleotides GFF860 and GFF861 are separated by 295 nucleotides
GFF858 - Permease of the drug/metabolite transporter (DMT) superfamily, at 35,450 to 36,376
GFF858
GFF859 - Putative cell envelope opacity-associated protein A, at 36,426 to 37,061
GFF859
GFF860 - FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8), at 37,281 to 37,901
GFF860
GFF861 - D-serine/D-alanine/glycine transporter, at 38,197 to 39,606
GFF861
Position (kb) 37
38 Strain fitness (log2 ratio) -1
0
1
2 at 36.314 kb on + strand at 36.315 kb on - strand at 36.428 kb on - strand at 36.496 kb on - strand, within GFF859 at 36.604 kb on + strand, within GFF859 at 36.974 kb on + strand, within GFF859 at 37.066 kb on + strand at 37.066 kb on + strand at 37.066 kb on + strand at 37.067 kb on - strand at 37.099 kb on - strand at 37.103 kb on + strand at 37.120 kb on - strand at 37.125 kb on - strand at 37.131 kb on - strand at 37.158 kb on - strand at 37.158 kb on - strand at 37.169 kb on - strand at 37.280 kb on - strand at 37.323 kb on + strand at 37.425 kb on - strand, within GFF860 at 37.592 kb on - strand, within GFF860 at 37.648 kb on + strand, within GFF860 at 37.660 kb on - strand, within GFF860 at 37.660 kb on - strand, within GFF860 at 37.802 kb on + strand, within GFF860 at 37.930 kb on - strand at 38.036 kb on - strand at 38.080 kb on + strand at 38.102 kb on + strand at 38.107 kb on - strand at 38.125 kb on + strand at 38.139 kb on + strand at 38.144 kb on + strand at 38.144 kb on + strand at 38.145 kb on - strand at 38.145 kb on - strand at 38.183 kb on - strand at 38.201 kb on + strand at 38.265 kb on + strand at 38.277 kb on + strand at 38.279 kb on + strand at 38.280 kb on - strand at 38.286 kb on + strand at 38.334 kb on + strand at 38.376 kb on + strand, within GFF861 at 38.376 kb on + strand, within GFF861 at 38.541 kb on + strand, within GFF861 at 38.637 kb on - strand, within GFF861 at 38.637 kb on - strand, within GFF861 at 38.896 kb on - strand, within GFF861
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6H2_phage 0.5 MOI remove 36,314 + +0.2 36,315 - -0.7 36,428 - +0.3 36,496 - GFF859 0.11 +0.1 36,604 + GFF859 0.28 -0.0 36,974 + GFF859 0.86 +0.4 37,066 + -0.4 37,066 + +0.2 37,066 + +0.8 37,067 - +0.2 37,099 - +0.4 37,103 + -0.1 37,120 - -0.8 37,125 - +0.2 37,131 - -0.6 37,158 - +0.9 37,158 - +0.1 37,169 - +0.3 37,280 - -0.4 37,323 + -0.7 37,425 - GFF860 0.23 -1.2 37,592 - GFF860 0.50 -0.2 37,648 + GFF860 0.59 -0.5 37,660 - GFF860 0.61 -0.1 37,660 - GFF860 0.61 +0.2 37,802 + GFF860 0.84 -0.1 37,930 - -0.6 38,036 - -0.2 38,080 + -0.1 38,102 + +0.3 38,107 - +0.3 38,125 + +0.0 38,139 + +0.2 38,144 + +0.2 38,144 + +0.0 38,145 - -0.4 38,145 - +0.2 38,183 - +0.4 38,201 + +0.3 38,265 + +0.1 38,277 + +0.8 38,279 + +0.1 38,280 - +0.0 38,286 + -0.6 38,334 + +0.9 38,376 + GFF861 0.13 +0.2 38,376 + GFF861 0.13 -0.6 38,541 + GFF861 0.24 +0.7 38,637 - GFF861 0.31 +0.2 38,637 - GFF861 0.31 +1.9 38,896 - GFF861 0.50 -0.2
Or see this region's nucleotide sequence