Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF731

Experiment: LB_plus_SM_buffer with 6H2_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF730 and GFF731 are separated by 90 nucleotidesGFF731 and GFF732 are separated by 26 nucleotidesGFF732 and GFF733 are separated by 69 nucleotides GFF730 - Dipeptide transport system permease protein DppC (TC 3.A.1.5.2), at 89,591 to 90,502 GFF730 GFF731 - Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase, at 90,593 to 91,918 GFF731 GFF732 - hypothetical protein, at 91,945 to 92,079 GFF732 GFF733 - biofilm regulator BssR, at 92,149 to 92,532 GFF733 Position (kb) 90 91 92Strain fitness (log2 ratio) -2 -1 0 1at 89.643 kb on + strandat 89.975 kb on + strand, within GFF730at 89.975 kb on + strand, within GFF730at 89.998 kb on + strand, within GFF730at 90.148 kb on + strand, within GFF730at 90.148 kb on + strand, within GFF730at 90.176 kb on - strand, within GFF730at 90.230 kb on - strand, within GFF730at 90.231 kb on + strand, within GFF730at 90.232 kb on - strand, within GFF730at 90.232 kb on - strand, within GFF730at 90.687 kb on + strandat 90.724 kb on + strandat 90.830 kb on - strand, within GFF731at 91.020 kb on - strand, within GFF731at 91.054 kb on + strand, within GFF731at 91.210 kb on - strand, within GFF731at 91.317 kb on - strand, within GFF731at 91.333 kb on + strand, within GFF731at 91.334 kb on - strand, within GFF731at 91.395 kb on - strand, within GFF731at 91.497 kb on + strand, within GFF731at 91.517 kb on + strand, within GFF731at 91.580 kb on + strand, within GFF731at 91.602 kb on + strand, within GFF731at 91.603 kb on - strand, within GFF731at 91.765 kb on + strand, within GFF731at 91.766 kb on - strand, within GFF731at 92.148 kb on + strandat 92.218 kb on + strand, within GFF733at 92.245 kb on + strand, within GFF733at 92.247 kb on + strand, within GFF733at 92.247 kb on + strand, within GFF733at 92.248 kb on - strand, within GFF733at 92.248 kb on - strand, within GFF733at 92.787 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6H2_phage 0.5 MOI
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89,643 + +0.2
89,975 + GFF730 0.42 +1.0
89,975 + GFF730 0.42 -0.2
89,998 + GFF730 0.45 +0.4
90,148 + GFF730 0.61 +0.3
90,148 + GFF730 0.61 +0.7
90,176 - GFF730 0.64 -0.1
90,230 - GFF730 0.70 +0.1
90,231 + GFF730 0.70 +0.3
90,232 - GFF730 0.70 +0.4
90,232 - GFF730 0.70 -1.8
90,687 + -0.2
90,724 + -0.1
90,830 - GFF731 0.18 +0.1
91,020 - GFF731 0.32 +0.6
91,054 + GFF731 0.35 -0.3
91,210 - GFF731 0.47 -0.8
91,317 - GFF731 0.55 +0.2
91,333 + GFF731 0.56 -1.0
91,334 - GFF731 0.56 -0.1
91,395 - GFF731 0.60 -0.2
91,497 + GFF731 0.68 -0.7
91,517 + GFF731 0.70 +0.0
91,580 + GFF731 0.74 -1.0
91,602 + GFF731 0.76 -0.6
91,603 - GFF731 0.76 -0.5
91,765 + GFF731 0.88 -1.1
91,766 - GFF731 0.88 -0.3
92,148 + -0.3
92,218 + GFF733 0.18 +0.5
92,245 + GFF733 0.25 -0.0
92,247 + GFF733 0.26 +0.4
92,247 + GFF733 0.26 +1.0
92,248 - GFF733 0.26 -0.4
92,248 - GFF733 0.26 +1.2
92,787 - +0.5

Or see this region's nucleotide sequence