Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF684

Experiment: LB_plus_SM_buffer with 6H2_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF683 and GFF684 are separated by 332 nucleotidesGFF684 and GFF685 are separated by 32 nucleotidesGFF685 and GFF686 are separated by 7 nucleotides GFF683 - Putative membrane protein, at 40,453 to 41,157 GFF683 GFF684 - Putative membrane protein, at 41,490 to 42,011 GFF684 GFF685 - Putative inner membrane protein, at 42,044 to 42,643 GFF685 GFF686 - Putative inner membrane protein, at 42,651 to 43,211 GFF686 Position (kb) 41 42 43Strain fitness (log2 ratio) -1 0 1at 40.510 kb on + strandat 40.510 kb on + strandat 40.510 kb on + strandat 40.511 kb on - strandat 40.526 kb on - strand, within GFF683at 40.550 kb on + strand, within GFF683at 40.585 kb on - strand, within GFF683at 40.687 kb on - strand, within GFF683at 40.778 kb on - strand, within GFF683at 40.844 kb on - strand, within GFF683at 40.879 kb on - strand, within GFF683at 41.324 kb on - strandat 41.573 kb on + strand, within GFF684at 41.804 kb on - strand, within GFF684at 41.830 kb on + strand, within GFF684at 42.595 kb on - strandat 42.782 kb on + strand, within GFF686at 42.858 kb on - strand, within GFF686at 42.881 kb on + strand, within GFF686

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6H2_phage 0.5 MOI
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40,510 + +0.0
40,510 + -0.1
40,510 + -0.0
40,511 - -1.2
40,526 - GFF683 0.10 +0.1
40,550 + GFF683 0.14 -0.1
40,585 - GFF683 0.19 -0.7
40,687 - GFF683 0.33 +0.4
40,778 - GFF683 0.46 -0.0
40,844 - GFF683 0.55 -0.0
40,879 - GFF683 0.60 -0.5
41,324 - +0.1
41,573 + GFF684 0.16 -0.7
41,804 - GFF684 0.60 -1.7
41,830 + GFF684 0.65 -0.0
42,595 - -0.2
42,782 + GFF686 0.23 -0.2
42,858 - GFF686 0.37 -0.2
42,881 + GFF686 0.41 -0.2

Or see this region's nucleotide sequence