Experiment: LB_plus_SM_buffer with 6H2_phage 0.5 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4701 and GFF4702 are separated by 31 nucleotides GFF4702 and GFF4703 overlap by 4 nucleotides GFF4703 and GFF4704 are separated by 185 nucleotides
GFF4701 - Glucitol operon repressor, at 11,417 to 12,190
GFF4701
GFF4702 - Arabinose 5-phosphate isomerase (EC 5.3.1.13), at 12,222 to 13,148
GFF4702
GFF4703 - Anaerobic nitric oxide reductase transcription regulator NorR, at 13,145 to 14,665
GFF4703
GFF4704 - Anaerobic nitric oxide reductase flavorubredoxin, at 14,851 to 16,290
GFF4704
Position (kb) 13
14
15 Strain fitness (log2 ratio) -1
0
1 at 12.196 kb on + strand at 12.199 kb on + strand at 12.220 kb on + strand at 12.468 kb on - strand, within GFF4702 at 12.468 kb on - strand, within GFF4702 at 13.005 kb on - strand, within GFF4702 at 13.064 kb on + strand at 13.142 kb on + strand at 13.228 kb on + strand at 13.419 kb on - strand, within GFF4703 at 13.473 kb on + strand, within GFF4703 at 13.474 kb on - strand, within GFF4703 at 13.775 kb on - strand, within GFF4703 at 13.846 kb on + strand, within GFF4703 at 13.847 kb on - strand, within GFF4703 at 13.886 kb on + strand, within GFF4703 at 13.886 kb on + strand, within GFF4703 at 13.886 kb on + strand, within GFF4703 at 14.191 kb on + strand, within GFF4703 at 14.192 kb on - strand, within GFF4703 at 14.461 kb on + strand, within GFF4703 at 14.693 kb on + strand at 14.954 kb on - strand at 15.070 kb on + strand, within GFF4704 at 15.071 kb on - strand, within GFF4704 at 15.148 kb on - strand, within GFF4704 at 15.151 kb on + strand, within GFF4704 at 15.177 kb on + strand, within GFF4704 at 15.313 kb on + strand, within GFF4704 at 15.313 kb on + strand, within GFF4704 at 15.314 kb on - strand, within GFF4704 at 15.314 kb on - strand, within GFF4704 at 15.365 kb on - strand, within GFF4704 at 15.433 kb on + strand, within GFF4704 at 15.433 kb on + strand, within GFF4704 at 15.574 kb on + strand, within GFF4704 at 15.574 kb on + strand, within GFF4704 at 15.574 kb on + strand, within GFF4704 at 15.574 kb on + strand, within GFF4704 at 15.575 kb on - strand, within GFF4704 at 15.575 kb on - strand, within GFF4704 at 15.596 kb on - strand, within GFF4704 at 15.609 kb on + strand, within GFF4704 at 15.643 kb on - strand, within GFF4704 at 15.643 kb on - strand, within GFF4704 at 15.643 kb on - strand, within GFF4704
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6H2_phage 0.5 MOI remove 12,196 + +0.1 12,199 + -0.3 12,220 + +0.3 12,468 - GFF4702 0.27 -0.1 12,468 - GFF4702 0.27 +0.1 13,005 - GFF4702 0.84 -1.7 13,064 + +0.1 13,142 + +0.0 13,228 + +0.0 13,419 - GFF4703 0.18 +0.0 13,473 + GFF4703 0.22 -0.4 13,474 - GFF4703 0.22 -0.1 13,775 - GFF4703 0.41 -1.2 13,846 + GFF4703 0.46 +0.3 13,847 - GFF4703 0.46 -0.5 13,886 + GFF4703 0.49 -1.2 13,886 + GFF4703 0.49 +0.2 13,886 + GFF4703 0.49 -0.1 14,191 + GFF4703 0.69 -1.4 14,192 - GFF4703 0.69 -0.8 14,461 + GFF4703 0.87 -0.7 14,693 + -0.2 14,954 - +0.1 15,070 + GFF4704 0.15 +0.1 15,071 - GFF4704 0.15 +0.3 15,148 - GFF4704 0.21 +0.3 15,151 + GFF4704 0.21 -1.2 15,177 + GFF4704 0.23 +0.9 15,313 + GFF4704 0.32 -0.7 15,313 + GFF4704 0.32 -0.6 15,314 - GFF4704 0.32 +0.3 15,314 - GFF4704 0.32 +0.4 15,365 - GFF4704 0.36 +0.1 15,433 + GFF4704 0.40 +0.3 15,433 + GFF4704 0.40 +0.1 15,574 + GFF4704 0.50 -0.5 15,574 + GFF4704 0.50 +0.2 15,574 + GFF4704 0.50 +0.0 15,574 + GFF4704 0.50 +0.7 15,575 - GFF4704 0.50 -0.1 15,575 - GFF4704 0.50 -0.6 15,596 - GFF4704 0.52 -0.2 15,609 + GFF4704 0.53 -1.2 15,643 - GFF4704 0.55 -0.5 15,643 - GFF4704 0.55 +0.2 15,643 - GFF4704 0.55 +0.2
Or see this region's nucleotide sequence