Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4581

Experiment: LB_plus_SM_buffer with 6H2_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4580 and GFF4581 are separated by 66 nucleotidesGFF4581 and GFF4659 are separated by 135 nucleotidesGFF4659 and GFF4660 are separated by 43 nucleotidesGFF4660 and GFF4661 are separated by 46 nucleotidesGFF4661 and GFF4662 are separated by 15 nucleotidesGFF4662 and GFF4663 are separated by 35 nucleotidesGFF4663 and GFF4664 are separated by 35 nucleotidesGFF4664 and GFF4665 are separated by 35 nucleotidesGFF4665 and GFF4666 are separated by 35 nucleotides GFF4580 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-), at 366,269 to 367,444 GFF4580 GFF4581 - Putative inner membrane protein, at 367,511 to 368,086 GFF4581 GFF4659 - tRNA-Gln-CTG, at 368,222 to 368,296 GFF4659 GFF4660 - tRNA-Gln-CTG, at 368,340 to 368,414 GFF4660 GFF4661 - tRNA-Met-CAT, at 368,461 to 368,537 GFF4661 GFF4662 - tRNA-Gln-TTG, at 368,553 to 368,627 GFF4662 GFF4663 - tRNA-Gln-TTG, at 368,663 to 368,737 GFF4663 GFF4664 - tRNA-Gln-TTG, at 368,773 to 368,847 GFF4664 GFF4665 - tRNA-Gln-TTG, at 368,883 to 368,957 GFF4665 GFF4666 - tRNA-Gln-TTG, at 368,993 to 369,067 GFF4666 Position (kb) 367 368 369Strain fitness (log2 ratio) -2 -1 0 1at 367.424 kb on - strandat 367.428 kb on - strandat 367.495 kb on + strandat 367.513 kb on - strandat 367.526 kb on + strandat 367.595 kb on + strand, within GFF4581at 367.595 kb on + strand, within GFF4581at 367.614 kb on - strand, within GFF4581at 367.621 kb on + strand, within GFF4581at 367.621 kb on + strand, within GFF4581at 367.622 kb on - strand, within GFF4581at 367.736 kb on - strand, within GFF4581at 367.785 kb on + strand, within GFF4581at 367.785 kb on + strand, within GFF4581at 367.869 kb on + strand, within GFF4581at 367.869 kb on + strand, within GFF4581at 367.870 kb on - strand, within GFF4581at 367.925 kb on + strand, within GFF4581at 367.926 kb on - strand, within GFF4581at 367.926 kb on - strand, within GFF4581at 367.927 kb on + strand, within GFF4581at 367.927 kb on + strand, within GFF4581at 368.045 kb on + strandat 368.064 kb on + strandat 368.132 kb on + strandat 368.174 kb on + strandat 368.460 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6H2_phage 0.5 MOI
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367,424 - -1.2
367,428 - -1.4
367,495 + -0.7
367,513 - -0.4
367,526 + +0.4
367,595 + GFF4581 0.15 -0.7
367,595 + GFF4581 0.15 +0.3
367,614 - GFF4581 0.18 -1.7
367,621 + GFF4581 0.19 -0.2
367,621 + GFF4581 0.19 +0.2
367,622 - GFF4581 0.19 -0.1
367,736 - GFF4581 0.39 -1.9
367,785 + GFF4581 0.48 +0.2
367,785 + GFF4581 0.48 -1.7
367,869 + GFF4581 0.62 +0.0
367,869 + GFF4581 0.62 -0.3
367,870 - GFF4581 0.62 -0.7
367,925 + GFF4581 0.72 +0.1
367,926 - GFF4581 0.72 -0.3
367,926 - GFF4581 0.72 -0.1
367,927 + GFF4581 0.72 -0.3
367,927 + GFF4581 0.72 +0.3
368,045 + -0.1
368,064 + -1.0
368,132 + -0.1
368,174 + -0.5
368,460 - +0.6

Or see this region's nucleotide sequence