Experiment: LB_plus_SM_buffer with 6H2_phage 0.5 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4373 and GFF4374 are separated by 11 nucleotides GFF4374 and GFF4375 are separated by 55 nucleotides GFF4375 and GFF4376 are separated by 116 nucleotides GFF4376 and GFF4377 are separated by 178 nucleotides GFF4377 and GFF4378 are separated by 27 nucleotides
GFF4373 - LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-independent, at 156,566 to 156,826
GFF4373
GFF4374 - LSU ribosomal protein L36p, at 156,838 to 156,972
GFF4374
GFF4375 - Putative inner membrane protein, at 157,028 to 157,498
GFF4375
GFF4376 - Maltose O-acetyltransferase (EC 2.3.1.79), at 157,615 to 158,166
GFF4376
GFF4377 - Haemolysin expression modulating protein, at 158,345 to 158,563
GFF4377
GFF4378 - FIG00948312: hypothetical protein, at 158,591 to 158,965
GFF4378
Position (kb) 157
158
159 Strain fitness (log2 ratio) -1
0
1 at 156.629 kb on + strand, within GFF4373 at 156.629 kb on + strand, within GFF4373 at 156.629 kb on + strand, within GFF4373 at 156.630 kb on - strand, within GFF4373 at 156.734 kb on + strand, within GFF4373 at 156.908 kb on + strand, within GFF4374 at 157.069 kb on - strand at 157.069 kb on - strand at 157.204 kb on - strand, within GFF4375 at 157.238 kb on - strand, within GFF4375 at 157.240 kb on - strand, within GFF4375 at 157.280 kb on - strand, within GFF4375 at 157.371 kb on + strand, within GFF4375 at 157.372 kb on - strand, within GFF4375 at 157.372 kb on - strand, within GFF4375 at 157.734 kb on + strand, within GFF4376 at 157.789 kb on + strand, within GFF4376 at 157.842 kb on - strand, within GFF4376 at 157.842 kb on - strand, within GFF4376 at 157.845 kb on + strand, within GFF4376 at 157.845 kb on + strand, within GFF4376 at 157.845 kb on + strand, within GFF4376 at 157.845 kb on + strand, within GFF4376 at 157.845 kb on + strand, within GFF4376 at 157.846 kb on - strand, within GFF4376 at 157.846 kb on - strand, within GFF4376 at 157.846 kb on - strand, within GFF4376 at 157.846 kb on - strand, within GFF4376 at 157.846 kb on - strand, within GFF4376 at 157.846 kb on - strand, within GFF4376 at 157.846 kb on - strand, within GFF4376 at 157.846 kb on - strand, within GFF4376 at 157.846 kb on - strand, within GFF4376 at 157.846 kb on - strand, within GFF4376 at 157.850 kb on - strand, within GFF4376 at 157.984 kb on - strand, within GFF4376 at 158.057 kb on + strand, within GFF4376 at 158.057 kb on + strand, within GFF4376 at 158.058 kb on - strand, within GFF4376 at 158.063 kb on + strand, within GFF4376 at 158.253 kb on - strand at 158.254 kb on + strand at 158.333 kb on - strand at 158.337 kb on + strand at 158.698 kb on - strand, within GFF4378 at 158.785 kb on + strand, within GFF4378 at 158.803 kb on + strand, within GFF4378 at 158.934 kb on - strand at 158.936 kb on - strand at 158.936 kb on - strand at 159.018 kb on - strand at 159.023 kb on + strand at 159.023 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6H2_phage 0.5 MOI remove 156,629 + GFF4373 0.24 +0.6 156,629 + GFF4373 0.24 +0.6 156,629 + GFF4373 0.24 -0.0 156,630 - GFF4373 0.25 +0.1 156,734 + GFF4373 0.64 -0.0 156,908 + GFF4374 0.52 -0.3 157,069 - -0.6 157,069 - +0.1 157,204 - GFF4375 0.37 +0.3 157,238 - GFF4375 0.45 +0.0 157,240 - GFF4375 0.45 +0.2 157,280 - GFF4375 0.54 -0.5 157,371 + GFF4375 0.73 -0.1 157,372 - GFF4375 0.73 +0.2 157,372 - GFF4375 0.73 -1.0 157,734 + GFF4376 0.22 +0.3 157,789 + GFF4376 0.32 -0.2 157,842 - GFF4376 0.41 +0.2 157,842 - GFF4376 0.41 +0.1 157,845 + GFF4376 0.42 -0.6 157,845 + GFF4376 0.42 -0.4 157,845 + GFF4376 0.42 -0.3 157,845 + GFF4376 0.42 -0.1 157,845 + GFF4376 0.42 -1.1 157,846 - GFF4376 0.42 -0.4 157,846 - GFF4376 0.42 -0.4 157,846 - GFF4376 0.42 -0.7 157,846 - GFF4376 0.42 +0.9 157,846 - GFF4376 0.42 -0.0 157,846 - GFF4376 0.42 +0.0 157,846 - GFF4376 0.42 -0.8 157,846 - GFF4376 0.42 -0.4 157,846 - GFF4376 0.42 +0.2 157,846 - GFF4376 0.42 +0.4 157,850 - GFF4376 0.43 +0.2 157,984 - GFF4376 0.67 -0.5 158,057 + GFF4376 0.80 -0.3 158,057 + GFF4376 0.80 -0.1 158,058 - GFF4376 0.80 +0.4 158,063 + GFF4376 0.81 -0.1 158,253 - +0.4 158,254 + -1.6 158,333 - -0.3 158,337 + -0.7 158,698 - GFF4378 0.29 +0.9 158,785 + GFF4378 0.52 +0.2 158,803 + GFF4378 0.57 -0.6 158,934 - -0.1 158,936 - +0.0 158,936 - +0.3 159,018 - +0.0 159,023 + +0.4 159,023 + -0.0
Or see this region's nucleotide sequence