Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4091

Experiment: LB_plus_SM_buffer with 6H2_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4090 and GFF4091 are separated by 110 nucleotidesGFF4091 and GFF4092 are separated by 21 nucleotidesGFF4092 and GFF4093 are separated by 405 nucleotides GFF4090 - Periplasmic fimbrial chaperone protein, at 48,155 to 48,952 GFF4090 GFF4091 - FIG034929: Fimbriae usher protein SafC, at 49,063 to 51,486 GFF4091 GFF4092 - Putative fimbrial structural subunit, at 51,508 to 51,978 GFF4092 GFF4093 - Polysaccharide deacetylase, at 52,384 to 53,205 GFF4093 Position (kb) 49 50 51 52Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 48.152 kb on - strandat 48.268 kb on + strand, within GFF4090at 48.280 kb on - strand, within GFF4090at 48.313 kb on + strand, within GFF4090at 48.574 kb on + strand, within GFF4090at 48.665 kb on - strand, within GFF4090at 48.817 kb on + strand, within GFF4090at 48.817 kb on + strand, within GFF4090at 48.830 kb on + strand, within GFF4090at 48.830 kb on + strand, within GFF4090at 48.830 kb on + strand, within GFF4090at 48.831 kb on - strand, within GFF4090at 48.863 kb on - strand, within GFF4090at 48.902 kb on - strandat 48.947 kb on - strandat 49.092 kb on + strandat 49.092 kb on + strandat 49.092 kb on + strandat 49.093 kb on - strandat 49.116 kb on - strandat 49.132 kb on + strandat 49.159 kb on - strandat 49.280 kb on - strandat 49.477 kb on + strand, within GFF4091at 49.515 kb on + strand, within GFF4091at 49.515 kb on + strand, within GFF4091at 49.566 kb on + strand, within GFF4091at 49.568 kb on + strand, within GFF4091at 49.642 kb on + strand, within GFF4091at 49.643 kb on - strand, within GFF4091at 49.643 kb on - strand, within GFF4091at 49.644 kb on + strand, within GFF4091at 49.645 kb on - strand, within GFF4091at 49.645 kb on - strand, within GFF4091at 49.645 kb on - strand, within GFF4091at 49.648 kb on + strand, within GFF4091at 49.666 kb on + strand, within GFF4091at 49.666 kb on + strand, within GFF4091at 49.666 kb on + strand, within GFF4091at 49.719 kb on - strand, within GFF4091at 49.719 kb on - strand, within GFF4091at 49.923 kb on + strand, within GFF4091at 49.923 kb on + strand, within GFF4091at 49.965 kb on + strand, within GFF4091at 50.097 kb on + strand, within GFF4091at 50.098 kb on - strand, within GFF4091at 50.107 kb on + strand, within GFF4091at 50.107 kb on + strand, within GFF4091at 50.107 kb on + strand, within GFF4091at 50.107 kb on + strand, within GFF4091at 50.108 kb on - strand, within GFF4091at 50.144 kb on + strand, within GFF4091at 50.362 kb on - strand, within GFF4091at 50.448 kb on + strand, within GFF4091at 50.448 kb on + strand, within GFF4091at 50.654 kb on + strand, within GFF4091at 50.655 kb on - strand, within GFF4091at 50.655 kb on - strand, within GFF4091at 50.700 kb on + strand, within GFF4091at 50.705 kb on + strand, within GFF4091at 50.706 kb on - strand, within GFF4091at 50.712 kb on + strand, within GFF4091at 50.712 kb on + strand, within GFF4091at 50.713 kb on - strand, within GFF4091at 50.815 kb on + strand, within GFF4091at 50.844 kb on + strand, within GFF4091at 50.891 kb on + strand, within GFF4091at 50.902 kb on + strand, within GFF4091at 50.904 kb on + strand, within GFF4091at 50.904 kb on + strand, within GFF4091at 50.904 kb on + strand, within GFF4091at 50.908 kb on + strand, within GFF4091at 50.952 kb on + strand, within GFF4091at 50.952 kb on + strand, within GFF4091at 50.952 kb on + strand, within GFF4091at 50.952 kb on + strand, within GFF4091at 50.954 kb on + strand, within GFF4091at 50.954 kb on + strand, within GFF4091at 50.954 kb on + strand, within GFF4091at 50.955 kb on - strand, within GFF4091at 50.955 kb on - strand, within GFF4091at 51.120 kb on + strand, within GFF4091at 51.120 kb on + strand, within GFF4091at 51.545 kb on - strandat 51.547 kb on - strandat 51.557 kb on + strand, within GFF4092at 51.620 kb on + strand, within GFF4092at 51.621 kb on - strand, within GFF4092at 51.626 kb on + strand, within GFF4092at 51.972 kb on + strandat 51.973 kb on - strandat 51.995 kb on + strandat 52.413 kb on - strandat 52.455 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6H2_phage 0.5 MOI
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48,152 - -1.0
48,268 + GFF4090 0.14 -0.4
48,280 - GFF4090 0.16 -0.1
48,313 + GFF4090 0.20 +0.6
48,574 + GFF4090 0.53 +0.5
48,665 - GFF4090 0.64 +0.1
48,817 + GFF4090 0.83 +0.8
48,817 + GFF4090 0.83 +0.6
48,830 + GFF4090 0.85 -0.6
48,830 + GFF4090 0.85 +0.2
48,830 + GFF4090 0.85 -0.9
48,831 - GFF4090 0.85 -0.0
48,863 - GFF4090 0.89 -0.9
48,902 - -0.4
48,947 - -0.1
49,092 + +0.0
49,092 + +1.0
49,092 + +0.4
49,093 - +1.1
49,116 - -0.2
49,132 + -0.5
49,159 - -0.3
49,280 - -1.0
49,477 + GFF4091 0.17 -1.0
49,515 + GFF4091 0.19 -2.7
49,515 + GFF4091 0.19 -1.2
49,566 + GFF4091 0.21 +1.1
49,568 + GFF4091 0.21 +0.6
49,642 + GFF4091 0.24 -0.4
49,643 - GFF4091 0.24 -0.4
49,643 - GFF4091 0.24 +0.4
49,644 + GFF4091 0.24 -0.3
49,645 - GFF4091 0.24 +0.2
49,645 - GFF4091 0.24 -0.2
49,645 - GFF4091 0.24 -0.2
49,648 + GFF4091 0.24 +0.8
49,666 + GFF4091 0.25 +0.2
49,666 + GFF4091 0.25 +0.8
49,666 + GFF4091 0.25 +0.3
49,719 - GFF4091 0.27 +0.6
49,719 - GFF4091 0.27 -0.0
49,923 + GFF4091 0.35 +0.1
49,923 + GFF4091 0.35 +0.1
49,965 + GFF4091 0.37 +0.5
50,097 + GFF4091 0.43 +0.6
50,098 - GFF4091 0.43 +0.9
50,107 + GFF4091 0.43 -0.8
50,107 + GFF4091 0.43 +0.9
50,107 + GFF4091 0.43 +0.0
50,107 + GFF4091 0.43 +0.6
50,108 - GFF4091 0.43 -0.1
50,144 + GFF4091 0.45 -0.3
50,362 - GFF4091 0.54 -0.2
50,448 + GFF4091 0.57 +1.0
50,448 + GFF4091 0.57 +0.6
50,654 + GFF4091 0.66 -0.1
50,655 - GFF4091 0.66 -0.6
50,655 - GFF4091 0.66 -0.1
50,700 + GFF4091 0.68 +0.0
50,705 + GFF4091 0.68 +0.6
50,706 - GFF4091 0.68 +0.4
50,712 + GFF4091 0.68 +0.1
50,712 + GFF4091 0.68 +0.4
50,713 - GFF4091 0.68 +0.4
50,815 + GFF4091 0.72 -0.2
50,844 + GFF4091 0.73 +0.7
50,891 + GFF4091 0.75 +0.4
50,902 + GFF4091 0.76 +0.8
50,904 + GFF4091 0.76 -0.5
50,904 + GFF4091 0.76 -1.8
50,904 + GFF4091 0.76 +1.0
50,908 + GFF4091 0.76 +0.9
50,952 + GFF4091 0.78 +0.4
50,952 + GFF4091 0.78 +0.2
50,952 + GFF4091 0.78 -0.1
50,952 + GFF4091 0.78 -0.4
50,954 + GFF4091 0.78 -0.2
50,954 + GFF4091 0.78 +0.5
50,954 + GFF4091 0.78 +0.1
50,955 - GFF4091 0.78 -1.3
50,955 - GFF4091 0.78 +0.1
51,120 + GFF4091 0.85 +0.4
51,120 + GFF4091 0.85 +0.4
51,545 - -0.1
51,547 - -0.9
51,557 + GFF4092 0.10 -0.2
51,620 + GFF4092 0.24 -1.1
51,621 - GFF4092 0.24 +0.4
51,626 + GFF4092 0.25 -4.0
51,972 + -0.3
51,973 - +0.1
51,995 + +0.5
52,413 - -0.1
52,455 - +0.1

Or see this region's nucleotide sequence