Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3655

Experiment: LB_plus_SM_buffer with 6H2_phage 0.5 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3654 and GFF3655 are separated by 217 nucleotidesGFF3655 and GFF3656 are separated by 292 nucleotidesGFF3656 and GFF3657 are separated by 9 nucleotides GFF3654 - Hypothetical MFS-type transporter protein YcaD, at 1,208 to 2,356 GFF3654 GFF3655 - Probable transport protein, at 2,574 to 3,995 GFF3655 GFF3656 - Pyruvate formate-lyase activating enzyme (EC 1.97.1.4), at 4,288 to 4,935 GFF3656 GFF3657 - hypothetical protein, at 4,945 to 5,076 GFF3657 Position (kb) 2 3 4Strain fitness (log2 ratio) -1 0 1at 1.610 kb on + strand, within GFF3654at 1.611 kb on - strand, within GFF3654at 1.626 kb on - strand, within GFF3654at 1.626 kb on - strand, within GFF3654at 1.627 kb on + strand, within GFF3654at 1.627 kb on + strand, within GFF3654at 1.628 kb on - strand, within GFF3654at 1.732 kb on - strand, within GFF3654at 1.863 kb on + strand, within GFF3654at 1.864 kb on - strand, within GFF3654at 1.881 kb on + strand, within GFF3654at 1.883 kb on + strand, within GFF3654at 2.023 kb on - strand, within GFF3654at 2.191 kb on - strand, within GFF3654at 2.196 kb on - strand, within GFF3654at 2.297 kb on + strandat 2.395 kb on - strandat 2.421 kb on + strandat 2.543 kb on + strandat 2.667 kb on + strandat 2.667 kb on + strandat 2.668 kb on - strandat 2.722 kb on - strand, within GFF3655at 2.733 kb on + strand, within GFF3655at 2.792 kb on + strand, within GFF3655at 2.893 kb on + strand, within GFF3655at 2.949 kb on - strand, within GFF3655at 3.079 kb on + strand, within GFF3655at 3.113 kb on + strand, within GFF3655at 3.138 kb on - strand, within GFF3655at 3.181 kb on - strand, within GFF3655at 3.181 kb on - strand, within GFF3655at 3.182 kb on + strand, within GFF3655at 3.197 kb on + strand, within GFF3655at 3.197 kb on + strand, within GFF3655at 3.197 kb on + strand, within GFF3655at 3.197 kb on + strand, within GFF3655at 3.198 kb on - strand, within GFF3655at 3.241 kb on - strand, within GFF3655at 3.241 kb on - strand, within GFF3655at 3.399 kb on + strand, within GFF3655at 3.399 kb on + strand, within GFF3655at 3.427 kb on - strand, within GFF3655at 3.549 kb on + strand, within GFF3655at 3.565 kb on + strand, within GFF3655at 3.566 kb on - strand, within GFF3655at 3.692 kb on + strand, within GFF3655at 3.787 kb on - strand, within GFF3655at 3.829 kb on + strand, within GFF3655at 3.830 kb on - strand, within GFF3655at 3.830 kb on - strand, within GFF3655at 4.081 kb on - strandat 4.167 kb on + strandat 4.293 kb on - strandat 4.354 kb on - strand, within GFF3656at 4.405 kb on - strand, within GFF3656at 4.425 kb on - strand, within GFF3656at 4.452 kb on + strand, within GFF3656at 4.563 kb on - strand, within GFF3656at 4.842 kb on - strand, within GFF3656at 4.861 kb on + strand, within GFF3656at 4.862 kb on - strand, within GFF3656

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6H2_phage 0.5 MOI
remove
1,610 + GFF3654 0.35 +0.3
1,611 - GFF3654 0.35 +0.4
1,626 - GFF3654 0.36 -0.6
1,626 - GFF3654 0.36 -0.6
1,627 + GFF3654 0.36 +0.2
1,627 + GFF3654 0.36 +0.5
1,628 - GFF3654 0.37 +0.3
1,732 - GFF3654 0.46 -0.4
1,863 + GFF3654 0.57 -0.3
1,864 - GFF3654 0.57 -1.1
1,881 + GFF3654 0.59 +0.6
1,883 + GFF3654 0.59 +0.2
2,023 - GFF3654 0.71 -0.4
2,191 - GFF3654 0.86 +0.6
2,196 - GFF3654 0.86 +0.0
2,297 + +0.6
2,395 - +0.3
2,421 + -0.0
2,543 + +0.4
2,667 + +0.2
2,667 + -0.2
2,668 - -0.5
2,722 - GFF3655 0.10 -0.2
2,733 + GFF3655 0.11 -0.7
2,792 + GFF3655 0.15 -0.2
2,893 + GFF3655 0.22 +0.3
2,949 - GFF3655 0.26 -0.7
3,079 + GFF3655 0.36 -0.0
3,113 + GFF3655 0.38 -1.3
3,138 - GFF3655 0.40 -1.2
3,181 - GFF3655 0.43 -1.4
3,181 - GFF3655 0.43 -0.1
3,182 + GFF3655 0.43 -0.0
3,197 + GFF3655 0.44 -0.0
3,197 + GFF3655 0.44 -0.5
3,197 + GFF3655 0.44 +1.3
3,197 + GFF3655 0.44 +1.0
3,198 - GFF3655 0.44 +0.4
3,241 - GFF3655 0.47 -0.4
3,241 - GFF3655 0.47 -0.7
3,399 + GFF3655 0.58 -0.2
3,399 + GFF3655 0.58 -0.4
3,427 - GFF3655 0.60 -0.3
3,549 + GFF3655 0.69 -0.6
3,565 + GFF3655 0.70 -0.7
3,566 - GFF3655 0.70 +0.2
3,692 + GFF3655 0.79 +0.2
3,787 - GFF3655 0.85 -0.7
3,829 + GFF3655 0.88 -0.5
3,830 - GFF3655 0.88 -0.9
3,830 - GFF3655 0.88 -0.6
4,081 - -0.3
4,167 + +0.2
4,293 - +0.1
4,354 - GFF3656 0.10 +0.4
4,405 - GFF3656 0.18 +0.5
4,425 - GFF3656 0.21 +0.3
4,452 + GFF3656 0.25 -0.2
4,563 - GFF3656 0.42 -0.0
4,842 - GFF3656 0.85 -0.1
4,861 + GFF3656 0.88 +0.1
4,862 - GFF3656 0.89 -0.5

Or see this region's nucleotide sequence