Experiment: LB_plus_SM_buffer with 6H2_phage 0.5 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3287 and GFF3288 are separated by 50 nucleotides GFF3288 and GFF3289 overlap by 1 nucleotides GFF3289 and GFF3290 are separated by 234 nucleotides GFF3290 and GFF3291 are separated by 48 nucleotides
GFF3287 - FIG01045683: hypothetical protein, at 60,354 to 60,509
GFF3287
GFF3288 - Chaperone-modulator protein CbpM, at 60,560 to 60,865
GFF3288
GFF3289 - DnaJ-class molecular chaperone CbpA, at 60,865 to 61,785
GFF3289
GFF3290 - Suppression of copper sensitivity: putative copper binding protein ScsA, at 62,020 to 62,382
GFF3290
GFF3291 - Membrane protein, suppressor for copper-sensitivity ScsB, at 62,431 to 64,317
GFF3291
Position (kb) 60
61
62 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 59.877 kb on + strand at 59.886 kb on - strand at 60.449 kb on + strand, within GFF3287 at 60.450 kb on - strand, within GFF3287 at 60.470 kb on + strand, within GFF3287 at 60.470 kb on + strand, within GFF3287 at 60.471 kb on - strand, within GFF3287 at 60.507 kb on + strand at 60.759 kb on + strand, within GFF3288 at 60.795 kb on - strand, within GFF3288 at 60.866 kb on + strand at 60.866 kb on + strand at 60.984 kb on - strand, within GFF3289 at 60.984 kb on - strand, within GFF3289 at 61.221 kb on + strand, within GFF3289 at 61.348 kb on - strand, within GFF3289 at 61.364 kb on + strand, within GFF3289 at 61.365 kb on - strand, within GFF3289 at 61.368 kb on + strand, within GFF3289 at 61.375 kb on - strand, within GFF3289 at 61.520 kb on + strand, within GFF3289 at 61.521 kb on - strand, within GFF3289 at 61.554 kb on + strand, within GFF3289 at 61.691 kb on + strand, within GFF3289 at 61.691 kb on + strand, within GFF3289 at 61.758 kb on + strand at 61.759 kb on - strand at 61.785 kb on + strand at 61.807 kb on + strand at 61.808 kb on - strand at 61.811 kb on + strand at 61.811 kb on + strand at 61.812 kb on - strand at 61.812 kb on - strand at 61.884 kb on + strand at 61.886 kb on + strand at 61.892 kb on + strand at 61.906 kb on + strand at 61.993 kb on + strand at 62.691 kb on - strand, within GFF3291
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6H2_phage 0.5 MOI remove 59,877 + +0.0 59,886 - +1.2 60,449 + GFF3287 0.61 +0.1 60,450 - GFF3287 0.62 -2.8 60,470 + GFF3287 0.74 -1.5 60,470 + GFF3287 0.74 +0.3 60,471 - GFF3287 0.75 -1.6 60,507 + +1.2 60,759 + GFF3288 0.65 -0.0 60,795 - GFF3288 0.77 -0.9 60,866 + -0.3 60,866 + -0.0 60,984 - GFF3289 0.13 +0.2 60,984 - GFF3289 0.13 -0.6 61,221 + GFF3289 0.39 -1.3 61,348 - GFF3289 0.52 +0.3 61,364 + GFF3289 0.54 +0.5 61,365 - GFF3289 0.54 +0.7 61,368 + GFF3289 0.55 +0.3 61,375 - GFF3289 0.55 +0.7 61,520 + GFF3289 0.71 +0.3 61,521 - GFF3289 0.71 +0.4 61,554 + GFF3289 0.75 +1.3 61,691 + GFF3289 0.90 +0.5 61,691 + GFF3289 0.90 -0.1 61,758 + +0.1 61,759 - +0.1 61,785 + -0.7 61,807 + +0.1 61,808 - +0.2 61,811 + +0.8 61,811 + -1.3 61,812 - +0.9 61,812 - +0.3 61,884 + +0.3 61,886 + +0.2 61,892 + -0.3 61,906 + -0.7 61,993 + +0.5 62,691 - GFF3291 0.14 -1.9
Or see this region's nucleotide sequence