Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF295

Experiment: LB_plus_SM_buffer with 6H2_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF294 and GFF295 are separated by 225 nucleotides GFF294 - D-serine permease DsdX, at 8,643 to 9,980 GFF294 GFF295 - D-serine dehydratase transcriptional activator, at 10,206 to 11,129 GFF295 Position (kb) 10 11 12Strain fitness (log2 ratio) -1 0 1at 9.387 kb on + strand, within GFF294at 9.432 kb on + strand, within GFF294at 9.433 kb on - strand, within GFF294at 9.439 kb on + strand, within GFF294at 9.581 kb on + strand, within GFF294at 9.924 kb on + strandat 9.925 kb on - strandat 9.981 kb on - strandat 9.990 kb on - strandat 10.237 kb on + strandat 10.266 kb on + strandat 10.268 kb on + strandat 10.353 kb on - strand, within GFF295at 10.527 kb on + strand, within GFF295at 10.581 kb on - strand, within GFF295at 10.629 kb on - strand, within GFF295at 10.664 kb on + strand, within GFF295at 10.668 kb on + strand, within GFF295at 10.668 kb on + strand, within GFF295at 10.668 kb on + strand, within GFF295at 10.669 kb on - strand, within GFF295at 10.807 kb on + strand, within GFF295at 10.830 kb on - strand, within GFF295at 11.052 kb on + strandat 11.053 kb on - strandat 11.103 kb on - strandat 11.135 kb on + strandat 11.170 kb on + strandat 11.175 kb on + strandat 11.179 kb on + strandat 11.180 kb on - strandat 11.231 kb on + strandat 11.473 kb on + strandat 11.474 kb on - strandat 11.487 kb on + strandat 11.487 kb on + strandat 11.491 kb on - strandat 11.508 kb on - strandat 11.530 kb on - strandat 11.531 kb on + strandat 11.657 kb on + strandat 11.658 kb on - strandat 11.658 kb on - strandat 11.667 kb on - strandat 11.686 kb on + strandat 11.686 kb on + strandat 11.686 kb on + strandat 11.686 kb on + strandat 11.687 kb on - strandat 11.689 kb on - strandat 11.787 kb on - strandat 11.811 kb on + strandat 11.811 kb on + strandat 11.811 kb on + strandat 11.811 kb on + strandat 11.864 kb on + strandat 11.865 kb on - strandat 11.945 kb on + strandat 12.079 kb on + strandat 12.099 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6H2_phage 0.5 MOI
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9,387 + GFF294 0.56 -0.4
9,432 + GFF294 0.59 +1.0
9,433 - GFF294 0.59 -0.2
9,439 + GFF294 0.59 -0.2
9,581 + GFF294 0.70 +0.9
9,924 + -0.4
9,925 - -0.4
9,981 - +0.6
9,990 - +0.4
10,237 + -0.1
10,266 + +0.1
10,268 + -0.1
10,353 - GFF295 0.16 -0.8
10,527 + GFF295 0.35 -0.1
10,581 - GFF295 0.41 -0.1
10,629 - GFF295 0.46 +0.1
10,664 + GFF295 0.50 -0.9
10,668 + GFF295 0.50 -1.4
10,668 + GFF295 0.50 +0.0
10,668 + GFF295 0.50 -0.1
10,669 - GFF295 0.50 -0.8
10,807 + GFF295 0.65 +0.4
10,830 - GFF295 0.68 -0.4
11,052 + +0.0
11,053 - -0.5
11,103 - -0.2
11,135 + -0.1
11,170 + +0.2
11,175 + -0.5
11,179 + -0.8
11,180 - +0.0
11,231 + -0.0
11,473 + -0.3
11,474 - -0.1
11,487 + -0.4
11,487 + -0.4
11,491 - +0.5
11,508 - -0.1
11,530 - +0.3
11,531 + +0.0
11,657 + +0.0
11,658 - +0.8
11,658 - +0.5
11,667 - +0.2
11,686 + +0.7
11,686 + +0.0
11,686 + +0.4
11,686 + +0.4
11,687 - -0.2
11,689 - +0.1
11,787 - +0.4
11,811 + -0.2
11,811 + -0.5
11,811 + +0.0
11,811 + -0.1
11,864 + -0.1
11,865 - -0.1
11,945 + -0.1
12,079 + -0.7
12,099 + -0.3

Or see this region's nucleotide sequence