Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2614

Experiment: LB_plus_SM_buffer with 6H2_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2613 and GFF2614 are separated by 48 nucleotidesGFF2614 and GFF2615 are separated by 292 nucleotides GFF2613 - Putative esterase, at 137,320 to 138,828 GFF2613 GFF2614 - FIG074102: hypothetical protein, at 138,877 to 140,220 GFF2614 GFF2615 - LysR family transcriptional regulator YdcI, at 140,513 to 141,436 GFF2615 Position (kb) 138 139 140 141Strain fitness (log2 ratio) -1 0 1at 138.160 kb on - strand, within GFF2613at 138.256 kb on + strand, within GFF2613at 138.351 kb on + strand, within GFF2613at 138.351 kb on + strand, within GFF2613at 138.351 kb on + strand, within GFF2613at 138.567 kb on - strand, within GFF2613at 138.624 kb on + strand, within GFF2613at 138.739 kb on + strandat 138.740 kb on - strandat 138.923 kb on + strandat 138.923 kb on + strandat 139.067 kb on + strand, within GFF2614at 139.068 kb on - strand, within GFF2614at 139.307 kb on - strand, within GFF2614at 139.592 kb on - strand, within GFF2614at 139.592 kb on - strand, within GFF2614at 139.638 kb on + strand, within GFF2614at 139.858 kb on - strand, within GFF2614at 139.931 kb on + strand, within GFF2614at 139.939 kb on + strand, within GFF2614at 139.980 kb on + strand, within GFF2614at 140.245 kb on - strandat 140.245 kb on - strandat 140.346 kb on - strandat 140.367 kb on + strandat 140.563 kb on + strandat 140.758 kb on - strand, within GFF2615at 140.951 kb on - strand, within GFF2615

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6H2_phage 0.5 MOI
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138,160 - GFF2613 0.56 -0.8
138,256 + GFF2613 0.62 -0.7
138,351 + GFF2613 0.68 +1.0
138,351 + GFF2613 0.68 +0.5
138,351 + GFF2613 0.68 +1.1
138,567 - GFF2613 0.83 +0.4
138,624 + GFF2613 0.86 +0.6
138,739 + -0.5
138,740 - +0.5
138,923 + -0.0
138,923 + +0.0
139,067 + GFF2614 0.14 +0.9
139,068 - GFF2614 0.14 +0.2
139,307 - GFF2614 0.32 +0.4
139,592 - GFF2614 0.53 +0.7
139,592 - GFF2614 0.53 -0.2
139,638 + GFF2614 0.57 +0.0
139,858 - GFF2614 0.73 +0.7
139,931 + GFF2614 0.78 +0.1
139,939 + GFF2614 0.79 +0.3
139,980 + GFF2614 0.82 -0.3
140,245 - -0.1
140,245 - +0.6
140,346 - -0.5
140,367 + -0.1
140,563 + +0.1
140,758 - GFF2615 0.27 +0.2
140,951 - GFF2615 0.47 -0.7

Or see this region's nucleotide sequence