Experiment: LB_plus_SM_buffer with 6H2_phage 0.5 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2573 and GFF2574 are separated by 283 nucleotides GFF2574 and GFF2575 are separated by 512 nucleotides
GFF2573 - N-hydroxyarylamine O-acetyltransferase (EC 2.3.1.118), at 93,993 to 94,838
GFF2573
GFF2574 - FIG074102: hypothetical protein, at 95,122 to 95,754
GFF2574
GFF2575 - L-asparagine permease, at 96,267 to 97,760
GFF2575
Position (kb) 95
96 Strain fitness (log2 ratio) -1
0
1 at 94.123 kb on - strand, within GFF2573 at 94.693 kb on - strand, within GFF2573 at 94.979 kb on + strand at 95.126 kb on + strand at 95.138 kb on + strand at 95.213 kb on + strand, within GFF2574 at 95.214 kb on - strand, within GFF2574 at 95.262 kb on - strand, within GFF2574 at 95.310 kb on - strand, within GFF2574 at 95.391 kb on + strand, within GFF2574 at 95.392 kb on - strand, within GFF2574 at 95.459 kb on - strand, within GFF2574 at 95.488 kb on + strand, within GFF2574 at 95.488 kb on + strand, within GFF2574 at 95.494 kb on - strand, within GFF2574 at 95.585 kb on + strand, within GFF2574 at 95.597 kb on - strand, within GFF2574 at 95.678 kb on + strand, within GFF2574 at 95.745 kb on + strand at 95.746 kb on - strand at 95.746 kb on - strand at 95.746 kb on - strand at 95.746 kb on - strand at 95.754 kb on + strand at 95.787 kb on + strand at 95.787 kb on + strand at 95.787 kb on + strand at 95.787 kb on + strand at 95.787 kb on + strand at 95.788 kb on - strand at 95.789 kb on + strand at 95.790 kb on - strand at 95.790 kb on - strand at 95.939 kb on - strand at 95.939 kb on - strand at 95.942 kb on + strand at 95.943 kb on - strand at 95.951 kb on - strand at 95.982 kb on - strand at 96.129 kb on - strand at 96.251 kb on + strand at 96.251 kb on + strand at 96.252 kb on - strand at 96.588 kb on + strand, within GFF2575 at 96.588 kb on + strand, within GFF2575 at 96.611 kb on + strand, within GFF2575 at 96.612 kb on - strand, within GFF2575 at 96.660 kb on + strand, within GFF2575 at 96.660 kb on + strand, within GFF2575 at 96.660 kb on + strand, within GFF2575 at 96.660 kb on + strand, within GFF2575 at 96.661 kb on - strand, within GFF2575 at 96.661 kb on - strand, within GFF2575
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6H2_phage 0.5 MOI remove 94,123 - GFF2573 0.15 -0.0 94,693 - GFF2573 0.83 -0.7 94,979 + +0.3 95,126 + +0.5 95,138 + +0.4 95,213 + GFF2574 0.14 -1.2 95,214 - GFF2574 0.15 +0.2 95,262 - GFF2574 0.22 -0.2 95,310 - GFF2574 0.30 -1.0 95,391 + GFF2574 0.42 -1.0 95,392 - GFF2574 0.43 +0.9 95,459 - GFF2574 0.53 -0.4 95,488 + GFF2574 0.58 -0.0 95,488 + GFF2574 0.58 -1.1 95,494 - GFF2574 0.59 -0.0 95,585 + GFF2574 0.73 -0.4 95,597 - GFF2574 0.75 +0.2 95,678 + GFF2574 0.88 -1.0 95,745 + -0.9 95,746 - -0.6 95,746 - -0.1 95,746 - +0.3 95,746 - -0.2 95,754 + -0.1 95,787 + -0.2 95,787 + -0.1 95,787 + -0.1 95,787 + +0.1 95,787 + +0.4 95,788 - -1.0 95,789 + -1.0 95,790 - -0.2 95,790 - +0.4 95,939 - +0.2 95,939 - -0.4 95,942 + -0.1 95,943 - -1.1 95,951 - -0.6 95,982 - +0.2 96,129 - +0.4 96,251 + +0.5 96,251 + +0.2 96,252 - -0.2 96,588 + GFF2575 0.21 -0.2 96,588 + GFF2575 0.21 -0.4 96,611 + GFF2575 0.23 -0.3 96,612 - GFF2575 0.23 -0.0 96,660 + GFF2575 0.26 -1.7 96,660 + GFF2575 0.26 -0.1 96,660 + GFF2575 0.26 +0.3 96,660 + GFF2575 0.26 -0.1 96,661 - GFF2575 0.26 +0.1 96,661 - GFF2575 0.26 -0.2
Or see this region's nucleotide sequence