Experiment: LB_plus_SM_buffer with 6H2_phage 0.5 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2439 and GFF2440 are separated by 181 nucleotides GFF2440 and GFF2441 are separated by 3 nucleotides GFF2441 and GFF2442 are separated by 10 nucleotides
GFF2439 - Uncharacterized protein yfhR, at 53,868 to 54,746
GFF2439
GFF2440 - Anaerobic sulfite reductase subunit A, at 54,928 to 55,971
GFF2440
GFF2441 - Anaerobic sulfite reductase subunit B, at 55,975 to 56,793
GFF2441
GFF2442 - Anaerobic sulfite reductase subunit C (EC 1.8.1.-), at 56,804 to 57,817
GFF2442
Position (kb) 54
55
56 Strain fitness (log2 ratio) -2
-1
0
1 at 53.934 kb on - strand at 53.992 kb on - strand, within GFF2439 at 54.138 kb on - strand, within GFF2439 at 54.138 kb on - strand, within GFF2439 at 54.279 kb on + strand, within GFF2439 at 54.279 kb on + strand, within GFF2439 at 54.280 kb on - strand, within GFF2439 at 54.760 kb on - strand at 54.762 kb on - strand at 55.150 kb on + strand, within GFF2440 at 55.227 kb on + strand, within GFF2440 at 55.250 kb on - strand, within GFF2440 at 55.252 kb on - strand, within GFF2440 at 55.252 kb on - strand, within GFF2440 at 55.663 kb on + strand, within GFF2440 at 55.663 kb on + strand, within GFF2440 at 55.664 kb on - strand, within GFF2440 at 55.664 kb on - strand, within GFF2440 at 55.685 kb on - strand, within GFF2440 at 55.819 kb on - strand, within GFF2440 at 55.831 kb on + strand, within GFF2440 at 55.832 kb on - strand, within GFF2440 at 56.184 kb on - strand, within GFF2441 at 56.229 kb on + strand, within GFF2441 at 56.312 kb on + strand, within GFF2441 at 56.475 kb on + strand, within GFF2441 at 56.476 kb on - strand, within GFF2441 at 56.476 kb on - strand, within GFF2441 at 56.577 kb on + strand, within GFF2441 at 56.578 kb on - strand, within GFF2441 at 56.620 kb on - strand, within GFF2441 at 56.735 kb on - strand at 56.735 kb on - strand at 56.760 kb on + strand at 56.816 kb on - strand at 56.906 kb on - strand, within GFF2442
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6H2_phage 0.5 MOI remove 53,934 - -0.2 53,992 - GFF2439 0.14 +0.1 54,138 - GFF2439 0.31 +0.2 54,138 - GFF2439 0.31 +0.4 54,279 + GFF2439 0.47 +0.1 54,279 + GFF2439 0.47 -0.3 54,280 - GFF2439 0.47 +1.0 54,760 - +0.7 54,762 - +0.1 55,150 + GFF2440 0.21 -0.3 55,227 + GFF2440 0.29 -0.3 55,250 - GFF2440 0.31 -0.9 55,252 - GFF2440 0.31 +0.2 55,252 - GFF2440 0.31 +0.3 55,663 + GFF2440 0.70 +1.0 55,663 + GFF2440 0.70 +0.8 55,664 - GFF2440 0.70 +0.2 55,664 - GFF2440 0.70 +0.6 55,685 - GFF2440 0.73 +0.2 55,819 - GFF2440 0.85 +0.0 55,831 + GFF2440 0.86 +0.1 55,832 - GFF2440 0.87 +0.8 56,184 - GFF2441 0.26 +0.0 56,229 + GFF2441 0.31 -1.1 56,312 + GFF2441 0.41 +0.7 56,475 + GFF2441 0.61 -0.6 56,476 - GFF2441 0.61 -2.2 56,476 - GFF2441 0.61 +0.3 56,577 + GFF2441 0.74 +0.0 56,578 - GFF2441 0.74 -0.1 56,620 - GFF2441 0.79 -1.3 56,735 - +0.2 56,735 - +0.2 56,760 + +0.2 56,816 - -0.1 56,906 - GFF2442 0.10 +0.3
Or see this region's nucleotide sequence