Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2254

Experiment: LB_plus_SM_buffer with 6H2_phage 0.5 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2253 and GFF2254 are separated by 320 nucleotidesGFF2254 and GFF2255 are separated by 267 nucleotides GFF2253 - Formate dehydrogenase O alpha subunit (EC 1.2.1.2) @ selenocysteine-containing, at 43,682 to 46,732 GFF2253 GFF2254 - Formate dehydrogenase chain D (EC 1.2.1.2), at 47,053 to 47,763 GFF2254 GFF2255 - Putative lipoprotein, at 48,031 to 49,062 GFF2255 Position (kb) 47 48Strain fitness (log2 ratio) -2 -1 0 1 2at 46.223 kb on - strand, within GFF2253at 46.331 kb on - strand, within GFF2253at 46.376 kb on - strand, within GFF2253at 46.429 kb on + strandat 46.511 kb on - strandat 46.620 kb on + strandat 46.877 kb on - strandat 46.885 kb on - strandat 46.911 kb on - strandat 46.911 kb on - strandat 46.911 kb on - strandat 46.911 kb on - strandat 46.912 kb on + strandat 46.913 kb on - strandat 46.935 kb on + strandat 46.935 kb on + strandat 46.936 kb on - strandat 46.937 kb on + strandat 46.956 kb on - strandat 47.065 kb on + strandat 47.066 kb on - strandat 47.066 kb on - strandat 47.066 kb on - strandat 47.294 kb on + strand, within GFF2254at 47.294 kb on + strand, within GFF2254at 47.295 kb on - strand, within GFF2254at 47.325 kb on + strand, within GFF2254at 47.433 kb on + strand, within GFF2254at 47.514 kb on + strand, within GFF2254at 47.591 kb on - strand, within GFF2254at 47.709 kb on + strandat 47.731 kb on + strandat 47.809 kb on + strandat 47.837 kb on + strandat 47.837 kb on + strandat 47.837 kb on + strandat 47.837 kb on + strandat 47.837 kb on + strandat 48.003 kb on + strandat 48.003 kb on + strandat 48.003 kb on + strandat 48.003 kb on + strandat 48.004 kb on - strandat 48.033 kb on - strandat 48.060 kb on + strandat 48.060 kb on + strandat 48.061 kb on - strandat 48.061 kb on - strandat 48.062 kb on + strandat 48.063 kb on - strandat 48.083 kb on + strandat 48.105 kb on - strandat 48.105 kb on - strandat 48.115 kb on + strandat 48.116 kb on - strandat 48.116 kb on - strandat 48.116 kb on - strandat 48.116 kb on - strandat 48.164 kb on + strand, within GFF2255at 48.164 kb on + strand, within GFF2255at 48.263 kb on - strand, within GFF2255at 48.263 kb on - strand, within GFF2255at 48.298 kb on - strand, within GFF2255at 48.358 kb on + strand, within GFF2255at 48.405 kb on - strand, within GFF2255at 48.407 kb on + strand, within GFF2255at 48.495 kb on - strand, within GFF2255at 48.586 kb on - strand, within GFF2255at 48.586 kb on - strand, within GFF2255at 48.613 kb on - strand, within GFF2255at 48.648 kb on + strand, within GFF2255at 48.691 kb on + strand, within GFF2255

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6H2_phage 0.5 MOI
remove
46,223 - GFF2253 0.83 +0.7
46,331 - GFF2253 0.87 -0.1
46,376 - GFF2253 0.88 +0.8
46,429 + +0.1
46,511 - +0.6
46,620 + +1.2
46,877 - -0.3
46,885 - +0.6
46,911 - +0.3
46,911 - -0.3
46,911 - +0.4
46,911 - +0.4
46,912 + +0.2
46,913 - +0.0
46,935 + +0.6
46,935 + +0.2
46,936 - +0.4
46,937 + +0.1
46,956 - -0.1
47,065 + +0.5
47,066 - +0.4
47,066 - +0.5
47,066 - +0.2
47,294 + GFF2254 0.34 +0.3
47,294 + GFF2254 0.34 +1.1
47,295 - GFF2254 0.34 +0.2
47,325 + GFF2254 0.38 +0.5
47,433 + GFF2254 0.53 +0.4
47,514 + GFF2254 0.65 +2.0
47,591 - GFF2254 0.76 +0.2
47,709 + -0.6
47,731 + -0.0
47,809 + +0.1
47,837 + -0.3
47,837 + +0.3
47,837 + -0.0
47,837 + +0.3
47,837 + +0.8
48,003 + -0.2
48,003 + +0.1
48,003 + -0.2
48,003 + -1.0
48,004 - -1.0
48,033 - -0.1
48,060 + -0.6
48,060 + +0.4
48,061 - -1.1
48,061 - +0.1
48,062 + +0.5
48,063 - -0.0
48,083 + -0.0
48,105 - +1.8
48,105 - -0.7
48,115 + +0.2
48,116 - -0.6
48,116 - -0.0
48,116 - -0.0
48,116 - -1.0
48,164 + GFF2255 0.13 +0.2
48,164 + GFF2255 0.13 -0.4
48,263 - GFF2255 0.22 -0.3
48,263 - GFF2255 0.22 -1.9
48,298 - GFF2255 0.26 +0.3
48,358 + GFF2255 0.32 -0.1
48,405 - GFF2255 0.36 +0.3
48,407 + GFF2255 0.36 -0.8
48,495 - GFF2255 0.45 -0.4
48,586 - GFF2255 0.54 +0.2
48,586 - GFF2255 0.54 -0.2
48,613 - GFF2255 0.56 +0.2
48,648 + GFF2255 0.60 +1.1
48,691 + GFF2255 0.64 -0.9

Or see this region's nucleotide sequence