Experiment: LB_plus_SM_buffer with 6H2_phage 0.5 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1794 and GFF1795 are separated by 174 nucleotides GFF1795 and GFF1796 are separated by 10 nucleotides
GFF1794 - Putative transport protein, at 13,951 to 14,985
GFF1794
GFF1795 - NAD(P) transhydrogenase subunit beta (EC 1.6.1.2), at 15,160 to 16,548
GFF1795
GFF1796 - NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2), at 16,559 to 18,088
GFF1796
Position (kb) 15
16
17 Strain fitness (log2 ratio) -2
-1
0
1
2 at 14.271 kb on + strand, within GFF1794 at 14.329 kb on + strand, within GFF1794 at 14.408 kb on + strand, within GFF1794 at 14.426 kb on + strand, within GFF1794 at 14.430 kb on + strand, within GFF1794 at 14.430 kb on + strand, within GFF1794 at 14.431 kb on - strand, within GFF1794 at 14.496 kb on + strand, within GFF1794 at 14.634 kb on - strand, within GFF1794 at 14.653 kb on + strand, within GFF1794 at 14.653 kb on + strand, within GFF1794 at 14.829 kb on - strand, within GFF1794 at 14.867 kb on + strand, within GFF1794 at 14.868 kb on - strand, within GFF1794 at 14.993 kb on + strand at 14.997 kb on + strand at 14.997 kb on + strand at 14.997 kb on + strand at 15.053 kb on + strand at 15.154 kb on - strand at 15.486 kb on + strand, within GFF1795 at 15.619 kb on - strand, within GFF1795 at 15.775 kb on - strand, within GFF1795 at 15.775 kb on - strand, within GFF1795 at 15.779 kb on + strand, within GFF1795 at 15.780 kb on - strand, within GFF1795 at 15.780 kb on - strand, within GFF1795 at 16.093 kb on - strand, within GFF1795 at 16.116 kb on + strand, within GFF1795 at 16.233 kb on - strand, within GFF1795 at 16.703 kb on - strand at 16.741 kb on + strand, within GFF1796 at 16.774 kb on - strand, within GFF1796 at 16.878 kb on - strand, within GFF1796 at 16.885 kb on - strand, within GFF1796 at 17.054 kb on - strand, within GFF1796 at 17.209 kb on - strand, within GFF1796 at 17.219 kb on - strand, within GFF1796 at 17.267 kb on - strand, within GFF1796 at 17.440 kb on + strand, within GFF1796
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6H2_phage 0.5 MOI remove 14,271 + GFF1794 0.31 -0.7 14,329 + GFF1794 0.37 +0.1 14,408 + GFF1794 0.44 +0.4 14,426 + GFF1794 0.46 +0.2 14,430 + GFF1794 0.46 +0.1 14,430 + GFF1794 0.46 +1.8 14,431 - GFF1794 0.46 -0.1 14,496 + GFF1794 0.53 -0.1 14,634 - GFF1794 0.66 -0.3 14,653 + GFF1794 0.68 +1.2 14,653 + GFF1794 0.68 -0.7 14,829 - GFF1794 0.85 -2.1 14,867 + GFF1794 0.89 +0.3 14,868 - GFF1794 0.89 -0.4 14,993 + +0.2 14,997 + -0.6 14,997 + +0.0 14,997 + -0.7 15,053 + -0.8 15,154 - +0.3 15,486 + GFF1795 0.23 +0.7 15,619 - GFF1795 0.33 +0.3 15,775 - GFF1795 0.44 +0.7 15,775 - GFF1795 0.44 +0.6 15,779 + GFF1795 0.45 +1.2 15,780 - GFF1795 0.45 +0.3 15,780 - GFF1795 0.45 -0.0 16,093 - GFF1795 0.67 +0.4 16,116 + GFF1795 0.69 -0.4 16,233 - GFF1795 0.77 -0.1 16,703 - -0.6 16,741 + GFF1796 0.12 -1.6 16,774 - GFF1796 0.14 +0.5 16,878 - GFF1796 0.21 +0.5 16,885 - GFF1796 0.21 -0.0 17,054 - GFF1796 0.32 +0.3 17,209 - GFF1796 0.42 +0.2 17,219 - GFF1796 0.43 -0.2 17,267 - GFF1796 0.46 +0.4 17,440 + GFF1796 0.58 +0.4
Or see this region's nucleotide sequence