Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1561

Experiment: LB_plus_SM_buffer with 6H2_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1559 and GFF1560 overlap by 4 nucleotidesGFF1560 and GFF1561 are separated by 14 nucleotidesGFF1561 and GFF1562 are separated by 10 nucleotides GFF1559 - hypothetical protein, at 22,656 to 22,775 GFF1559 GFF1560 - Tricarboxylate transport protein TctC, at 22,772 to 23,749 GFF1560 GFF1561 - Tricarboxylate transport protein TctB, at 23,764 to 24,195 GFF1561 GFF1562 - Tricarboxylate transport membrane protein TctA, at 24,206 to 25,720 GFF1562 Position (kb) 23 24 25Strain fitness (log2 ratio) -2 -1 0 1at 22.823 kb on - strandat 22.967 kb on + strand, within GFF1560at 22.967 kb on + strand, within GFF1560at 22.968 kb on - strand, within GFF1560at 22.968 kb on - strand, within GFF1560at 22.969 kb on + strand, within GFF1560at 22.970 kb on - strand, within GFF1560at 23.248 kb on + strand, within GFF1560at 23.543 kb on + strand, within GFF1560at 23.544 kb on - strand, within GFF1560at 23.574 kb on - strand, within GFF1560at 23.688 kb on - strandat 23.705 kb on - strandat 23.851 kb on + strand, within GFF1561at 23.852 kb on - strand, within GFF1561at 23.978 kb on + strand, within GFF1561at 24.007 kb on + strand, within GFF1561at 24.007 kb on + strand, within GFF1561at 24.139 kb on + strand, within GFF1561at 24.171 kb on - strandat 24.171 kb on - strandat 24.394 kb on - strand, within GFF1562at 24.413 kb on + strand, within GFF1562at 24.413 kb on + strand, within GFF1562at 24.414 kb on - strand, within GFF1562at 24.414 kb on - strand, within GFF1562at 24.429 kb on - strand, within GFF1562at 24.782 kb on + strand, within GFF1562at 24.867 kb on + strand, within GFF1562at 25.042 kb on + strand, within GFF1562at 25.046 kb on + strand, within GFF1562at 25.046 kb on + strand, within GFF1562at 25.047 kb on - strand, within GFF1562at 25.048 kb on + strand, within GFF1562at 25.049 kb on - strand, within GFF1562

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6H2_phage 0.5 MOI
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22,823 - -0.8
22,967 + GFF1560 0.20 +0.6
22,967 + GFF1560 0.20 +0.1
22,968 - GFF1560 0.20 -0.3
22,968 - GFF1560 0.20 -0.1
22,969 + GFF1560 0.20 -0.2
22,970 - GFF1560 0.20 -0.4
23,248 + GFF1560 0.49 -0.0
23,543 + GFF1560 0.79 +1.4
23,544 - GFF1560 0.79 +0.6
23,574 - GFF1560 0.82 +0.6
23,688 - +0.6
23,705 - +0.5
23,851 + GFF1561 0.20 -0.2
23,852 - GFF1561 0.20 +0.0
23,978 + GFF1561 0.50 -0.1
24,007 + GFF1561 0.56 -0.2
24,007 + GFF1561 0.56 -0.9
24,139 + GFF1561 0.87 -0.4
24,171 - +0.3
24,171 - -2.2
24,394 - GFF1562 0.12 +0.2
24,413 + GFF1562 0.14 +0.1
24,413 + GFF1562 0.14 +0.2
24,414 - GFF1562 0.14 -0.0
24,414 - GFF1562 0.14 +0.0
24,429 - GFF1562 0.15 +1.3
24,782 + GFF1562 0.38 +0.3
24,867 + GFF1562 0.44 -0.1
25,042 + GFF1562 0.55 +0.1
25,046 + GFF1562 0.55 -0.5
25,046 + GFF1562 0.55 -0.2
25,047 - GFF1562 0.56 +0.0
25,048 + GFF1562 0.56 +0.2
25,049 - GFF1562 0.56 +0.1

Or see this region's nucleotide sequence