Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1388

Experiment: LB_plus_SM_buffer with 6H2_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1385 and GFF1386 overlap by 41 nucleotidesGFF1386 and GFF1387 are separated by 51 nucleotidesGFF1387 and GFF1388 overlap by 1 nucleotidesGFF1388 and GFF1389 overlap by 11 nucleotidesGFF1389 and GFF1390 overlap by 4 nucleotidesGFF1390 and GFF1391 are separated by 159 nucleotides GFF1385 - hypothetical protein, at 33,113 to 33,241 GFF1385 GFF1386 - FIG00639134: hypothetical protein, at 33,201 to 33,518 GFF1386 GFF1387 - Putative phage tail core protein, at 33,570 to 34,094 GFF1387 GFF1388 - Phage tail sheath monomer, at 34,094 to 35,521 GFF1388 GFF1389 - FIG074102: hypothetical protein, at 35,511 to 35,708 GFF1389 GFF1390 - Phage protein, at 35,705 to 36,160 GFF1390 GFF1391 - Putative inner membrane protein, at 36,320 to 36,634 GFF1391 Position (kb) 34 35 36Strain fitness (log2 ratio) -2 -1 0 1at 33.173 kb on - strand, within GFF1385at 33.314 kb on - strand, within GFF1386at 33.447 kb on + strand, within GFF1386at 33.448 kb on - strand, within GFF1386at 33.485 kb on + strand, within GFF1386at 33.522 kb on - strandat 33.582 kb on - strandat 33.813 kb on - strand, within GFF1387at 33.872 kb on + strand, within GFF1387at 33.984 kb on - strand, within GFF1387at 34.008 kb on - strand, within GFF1387at 34.353 kb on + strand, within GFF1388at 34.354 kb on - strand, within GFF1388at 34.354 kb on - strand, within GFF1388at 34.421 kb on - strand, within GFF1388at 34.421 kb on - strand, within GFF1388at 34.421 kb on - strand, within GFF1388at 34.426 kb on + strand, within GFF1388at 34.426 kb on + strand, within GFF1388at 34.426 kb on + strand, within GFF1388at 34.427 kb on - strand, within GFF1388at 34.427 kb on - strand, within GFF1388at 34.485 kb on + strand, within GFF1388at 34.485 kb on + strand, within GFF1388at 34.486 kb on - strand, within GFF1388at 34.486 kb on - strand, within GFF1388at 34.762 kb on + strand, within GFF1388at 34.762 kb on + strand, within GFF1388at 34.830 kb on + strand, within GFF1388at 34.831 kb on - strand, within GFF1388at 34.834 kb on + strand, within GFF1388at 34.835 kb on - strand, within GFF1388at 35.034 kb on + strand, within GFF1388at 35.049 kb on + strand, within GFF1388at 35.050 kb on - strand, within GFF1388at 35.119 kb on - strand, within GFF1388at 35.134 kb on + strand, within GFF1388at 35.137 kb on - strand, within GFF1388at 35.275 kb on + strand, within GFF1388at 35.495 kb on + strandat 35.496 kb on - strandat 35.496 kb on - strandat 35.513 kb on - strandat 35.646 kb on + strand, within GFF1389at 35.647 kb on - strand, within GFF1389at 35.833 kb on - strand, within GFF1390at 35.919 kb on - strand, within GFF1390at 35.930 kb on + strand, within GFF1390at 35.931 kb on - strand, within GFF1390at 36.095 kb on - strand, within GFF1390at 36.120 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6H2_phage 0.5 MOI
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33,173 - GFF1385 0.47 +0.1
33,314 - GFF1386 0.36 +0.2
33,447 + GFF1386 0.77 -0.0
33,448 - GFF1386 0.78 +0.1
33,485 + GFF1386 0.89 -0.3
33,522 - -1.6
33,582 - +0.4
33,813 - GFF1387 0.46 -0.8
33,872 + GFF1387 0.58 -0.3
33,984 - GFF1387 0.79 +0.3
34,008 - GFF1387 0.83 +0.9
34,353 + GFF1388 0.18 +0.5
34,354 - GFF1388 0.18 -0.1
34,354 - GFF1388 0.18 -1.8
34,421 - GFF1388 0.23 -2.2
34,421 - GFF1388 0.23 -0.4
34,421 - GFF1388 0.23 +0.1
34,426 + GFF1388 0.23 -0.6
34,426 + GFF1388 0.23 -0.1
34,426 + GFF1388 0.23 +0.2
34,427 - GFF1388 0.23 +0.3
34,427 - GFF1388 0.23 +0.0
34,485 + GFF1388 0.27 +0.8
34,485 + GFF1388 0.27 -0.1
34,486 - GFF1388 0.27 -0.5
34,486 - GFF1388 0.27 -0.9
34,762 + GFF1388 0.47 +0.1
34,762 + GFF1388 0.47 -0.6
34,830 + GFF1388 0.52 +0.3
34,831 - GFF1388 0.52 +0.2
34,834 + GFF1388 0.52 -0.8
34,835 - GFF1388 0.52 +0.4
35,034 + GFF1388 0.66 -0.6
35,049 + GFF1388 0.67 +0.1
35,050 - GFF1388 0.67 -0.0
35,119 - GFF1388 0.72 -0.6
35,134 + GFF1388 0.73 +0.3
35,137 - GFF1388 0.73 +0.1
35,275 + GFF1388 0.83 -0.1
35,495 + -0.3
35,496 - -0.2
35,496 - -0.3
35,513 - +0.4
35,646 + GFF1389 0.68 -0.4
35,647 - GFF1389 0.69 -0.6
35,833 - GFF1390 0.28 -0.0
35,919 - GFF1390 0.47 +0.5
35,930 + GFF1390 0.49 -1.3
35,931 - GFF1390 0.50 +0.0
36,095 - GFF1390 0.86 +0.3
36,120 - -0.7

Or see this region's nucleotide sequence