Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF134

Experiment: LB_plus_SM_buffer with 6H2_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF133 and GFF134 are separated by 30 nucleotidesGFF134 and GFF135 are separated by 225 nucleotidesGFF135 and GFF136 are separated by 41 nucleotides GFF133 - Type IV fimbrial assembly protein PilC, at 122,761 to 123,963 GFF133 GFF134 - GMP reductase (EC 1.7.1.7), at 123,994 to 125,037 GFF134 GFF135 - Dephospho-CoA kinase (EC 2.7.1.24), at 125,263 to 125,883 GFF135 GFF136 - FIG002842: hypothetical protein, at 125,925 to 126,626 GFF136 Position (kb) 123 124 125 126Strain fitness (log2 ratio) -1 0 1at 123.462 kb on - strand, within GFF133at 123.627 kb on + strand, within GFF133at 123.730 kb on - strand, within GFF133at 123.783 kb on + strand, within GFF133at 123.795 kb on + strand, within GFF133at 123.887 kb on + strandat 123.888 kb on - strandat 123.891 kb on + strandat 123.917 kb on - strandat 123.917 kb on - strandat 123.917 kb on - strandat 123.917 kb on - strandat 123.992 kb on + strandat 123.995 kb on + strandat 123.995 kb on + strandat 123.996 kb on - strandat 124.038 kb on + strandat 124.085 kb on + strandat 124.085 kb on + strandat 124.085 kb on + strandat 124.086 kb on - strandat 124.086 kb on - strandat 124.086 kb on - strandat 124.086 kb on - strandat 124.168 kb on - strand, within GFF134at 124.271 kb on - strand, within GFF134at 124.533 kb on + strand, within GFF134at 124.656 kb on + strand, within GFF134at 124.802 kb on + strand, within GFF134at 124.813 kb on + strand, within GFF134at 124.813 kb on + strand, within GFF134at 125.040 kb on - strandat 125.040 kb on - strandat 125.093 kb on + strandat 125.098 kb on + strandat 125.099 kb on - strandat 125.178 kb on + strandat 125.198 kb on - strandat 125.262 kb on + strandat 125.930 kb on + strandat 125.931 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6H2_phage 0.5 MOI
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123,462 - GFF133 0.58 -0.0
123,627 + GFF133 0.72 +0.0
123,730 - GFF133 0.81 -0.3
123,783 + GFF133 0.85 -1.5
123,795 + GFF133 0.86 +0.7
123,887 + +0.1
123,888 - +0.4
123,891 + +0.5
123,917 - +0.2
123,917 - -0.2
123,917 - -0.0
123,917 - +0.1
123,992 + +0.8
123,995 + -0.3
123,995 + -0.0
123,996 - +0.4
124,038 + +0.2
124,085 + +0.3
124,085 + -0.2
124,085 + +0.5
124,086 - -1.6
124,086 - -0.4
124,086 - +0.4
124,086 - -0.4
124,168 - GFF134 0.17 -0.3
124,271 - GFF134 0.27 -0.7
124,533 + GFF134 0.52 -0.1
124,656 + GFF134 0.63 -0.3
124,802 + GFF134 0.77 -0.5
124,813 + GFF134 0.78 -0.5
124,813 + GFF134 0.78 -0.2
125,040 - +0.2
125,040 - +0.2
125,093 + -0.4
125,098 + +0.1
125,099 - -0.9
125,178 + -0.5
125,198 - +0.2
125,262 + -0.6
125,930 + +0.4
125,931 - +0.0

Or see this region's nucleotide sequence