Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1182

Experiment: LB_plus_SM_buffer with 6H2_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1181 and GFF1182 overlap by 4 nucleotidesGFF1182 and GFF1183 are separated by 21 nucleotidesGFF1183 and GFF1184 are separated by 35 nucleotides GFF1181 - IncF plasmid conjugative transfer pilus assembly protein TraH, at 24,752 to 26,134 GFF1181 GFF1182 - IncF plasmid conjugative transfer protein TraG, at 26,131 to 28,953 GFF1182 GFF1183 - IncF plasmid conjugative transfer surface exclusion protein TraS, at 28,975 to 29,463 GFF1183 GFF1184 - IncF plasmid conjugative transfer surface exclusion protein TraT, at 29,499 to 30,230 GFF1184 Position (kb) 26 27 28 29Strain fitness (log2 ratio) -2 -1 0 1 2at 25.189 kb on + strand, within GFF1181at 25.195 kb on + strand, within GFF1181at 25.195 kb on + strand, within GFF1181at 25.339 kb on + strand, within GFF1181at 25.339 kb on + strand, within GFF1181at 25.339 kb on + strand, within GFF1181at 25.339 kb on + strand, within GFF1181at 25.340 kb on - strand, within GFF1181at 25.565 kb on - strand, within GFF1181at 25.600 kb on - strand, within GFF1181at 25.600 kb on - strand, within GFF1181at 25.601 kb on + strand, within GFF1181at 25.601 kb on + strand, within GFF1181at 25.602 kb on - strand, within GFF1181at 25.602 kb on - strand, within GFF1181at 25.621 kb on + strand, within GFF1181at 25.747 kb on + strand, within GFF1181at 25.762 kb on + strand, within GFF1181at 25.763 kb on - strand, within GFF1181at 25.839 kb on - strand, within GFF1181at 25.853 kb on + strand, within GFF1181at 25.853 kb on + strand, within GFF1181at 25.854 kb on - strand, within GFF1181at 25.880 kb on + strand, within GFF1181at 25.881 kb on - strand, within GFF1181at 25.881 kb on - strand, within GFF1181at 25.931 kb on + strand, within GFF1181at 25.931 kb on + strand, within GFF1181at 25.932 kb on - strand, within GFF1181at 25.932 kb on - strand, within GFF1181at 25.954 kb on + strand, within GFF1181at 25.954 kb on + strand, within GFF1181at 25.955 kb on - strand, within GFF1181at 26.058 kb on - strandat 26.058 kb on - strandat 26.143 kb on + strandat 26.144 kb on - strandat 26.144 kb on - strandat 26.173 kb on - strandat 26.173 kb on - strandat 26.268 kb on + strandat 26.269 kb on - strandat 26.286 kb on + strandat 26.287 kb on - strandat 26.287 kb on - strandat 26.331 kb on - strandat 26.360 kb on + strandat 26.360 kb on + strandat 26.361 kb on - strandat 26.367 kb on - strandat 26.367 kb on - strandat 26.406 kb on + strandat 26.476 kb on + strand, within GFF1182at 26.477 kb on - strand, within GFF1182at 26.477 kb on - strand, within GFF1182at 26.477 kb on - strand, within GFF1182at 26.512 kb on + strand, within GFF1182at 26.513 kb on - strand, within GFF1182at 26.526 kb on + strand, within GFF1182at 26.527 kb on - strand, within GFF1182at 26.609 kb on - strand, within GFF1182at 26.634 kb on + strand, within GFF1182at 26.635 kb on - strand, within GFF1182at 26.635 kb on - strand, within GFF1182at 26.635 kb on - strand, within GFF1182at 26.654 kb on - strand, within GFF1182at 26.692 kb on - strand, within GFF1182at 26.731 kb on + strand, within GFF1182at 26.731 kb on + strand, within GFF1182at 26.803 kb on - strand, within GFF1182at 26.830 kb on + strand, within GFF1182at 26.831 kb on - strand, within GFF1182at 26.909 kb on - strand, within GFF1182at 26.950 kb on - strand, within GFF1182at 26.950 kb on - strand, within GFF1182at 26.991 kb on + strand, within GFF1182at 27.120 kb on + strand, within GFF1182at 27.120 kb on + strand, within GFF1182at 27.208 kb on + strand, within GFF1182at 27.209 kb on - strand, within GFF1182at 27.212 kb on + strand, within GFF1182at 27.212 kb on + strand, within GFF1182at 27.212 kb on + strand, within GFF1182at 27.213 kb on - strand, within GFF1182at 27.213 kb on - strand, within GFF1182at 27.213 kb on - strand, within GFF1182at 27.213 kb on - strand, within GFF1182at 27.250 kb on + strand, within GFF1182at 27.251 kb on - strand, within GFF1182at 27.329 kb on + strand, within GFF1182at 27.407 kb on + strand, within GFF1182at 27.407 kb on + strand, within GFF1182at 27.509 kb on - strand, within GFF1182at 27.558 kb on + strand, within GFF1182at 27.567 kb on + strand, within GFF1182at 27.568 kb on - strand, within GFF1182at 27.568 kb on - strand, within GFF1182at 27.639 kb on + strand, within GFF1182at 27.639 kb on + strand, within GFF1182at 27.639 kb on + strand, within GFF1182at 27.640 kb on - strand, within GFF1182at 27.640 kb on - strand, within GFF1182at 27.780 kb on + strand, within GFF1182at 27.798 kb on + strand, within GFF1182at 27.933 kb on + strand, within GFF1182at 27.933 kb on + strand, within GFF1182at 27.933 kb on + strand, within GFF1182at 27.934 kb on - strand, within GFF1182at 27.934 kb on - strand, within GFF1182at 27.937 kb on - strand, within GFF1182at 27.937 kb on - strand, within GFF1182at 27.937 kb on - strand, within GFF1182at 28.000 kb on + strand, within GFF1182at 28.001 kb on - strand, within GFF1182at 28.001 kb on - strand, within GFF1182at 28.028 kb on + strand, within GFF1182at 28.205 kb on - strand, within GFF1182at 28.205 kb on - strand, within GFF1182at 28.252 kb on - strand, within GFF1182at 28.309 kb on + strand, within GFF1182at 28.309 kb on + strand, within GFF1182at 28.310 kb on - strand, within GFF1182at 28.318 kb on + strand, within GFF1182at 28.348 kb on + strand, within GFF1182at 28.535 kb on + strand, within GFF1182at 28.590 kb on + strand, within GFF1182at 28.591 kb on - strand, within GFF1182at 28.617 kb on + strand, within GFF1182at 28.683 kb on + strandat 28.684 kb on - strandat 28.684 kb on - strandat 28.687 kb on - strandat 28.764 kb on + strandat 28.820 kb on - strandat 28.852 kb on + strandat 29.273 kb on + strand, within GFF1183at 29.279 kb on + strand, within GFF1183at 29.315 kb on - strand, within GFF1183at 29.371 kb on + strand, within GFF1183at 29.372 kb on - strand, within GFF1183at 29.372 kb on - strand, within GFF1183at 29.395 kb on - strand, within GFF1183at 29.493 kb on - strandat 29.658 kb on + strand, within GFF1184at 29.658 kb on + strand, within GFF1184at 29.676 kb on - strand, within GFF1184at 29.739 kb on + strand, within GFF1184at 29.742 kb on - strand, within GFF1184at 29.769 kb on + strand, within GFF1184at 29.769 kb on + strand, within GFF1184at 29.769 kb on + strand, within GFF1184at 29.773 kb on - strand, within GFF1184at 29.895 kb on + strand, within GFF1184at 29.895 kb on + strand, within GFF1184at 29.896 kb on - strand, within GFF1184

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6H2_phage 0.5 MOI
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25,189 + GFF1181 0.32 +0.4
25,195 + GFF1181 0.32 +0.1
25,195 + GFF1181 0.32 -1.2
25,339 + GFF1181 0.42 -0.0
25,339 + GFF1181 0.42 -1.6
25,339 + GFF1181 0.42 -0.9
25,339 + GFF1181 0.42 -0.2
25,340 - GFF1181 0.43 +0.2
25,565 - GFF1181 0.59 +0.2
25,600 - GFF1181 0.61 +0.1
25,600 - GFF1181 0.61 -0.2
25,601 + GFF1181 0.61 -0.2
25,601 + GFF1181 0.61 +0.0
25,602 - GFF1181 0.61 +0.2
25,602 - GFF1181 0.61 -0.8
25,621 + GFF1181 0.63 +0.0
25,747 + GFF1181 0.72 -1.6
25,762 + GFF1181 0.73 +0.3
25,763 - GFF1181 0.73 +2.0
25,839 - GFF1181 0.79 +0.0
25,853 + GFF1181 0.80 +0.0
25,853 + GFF1181 0.80 +0.5
25,854 - GFF1181 0.80 -0.6
25,880 + GFF1181 0.82 -0.1
25,881 - GFF1181 0.82 +0.8
25,881 - GFF1181 0.82 +0.7
25,931 + GFF1181 0.85 +0.0
25,931 + GFF1181 0.85 -0.3
25,932 - GFF1181 0.85 +0.4
25,932 - GFF1181 0.85 -0.2
25,954 + GFF1181 0.87 -0.1
25,954 + GFF1181 0.87 +0.5
25,955 - GFF1181 0.87 -0.0
26,058 - +0.5
26,058 - -0.7
26,143 + +0.1
26,144 - +0.8
26,144 - +0.4
26,173 - -0.5
26,173 - -0.7
26,268 + +0.2
26,269 - -0.7
26,286 + +0.2
26,287 - +0.2
26,287 - -0.1
26,331 - -1.4
26,360 + +0.2
26,360 + +0.2
26,361 - +0.4
26,367 - -0.5
26,367 - +0.1
26,406 + -0.2
26,476 + GFF1182 0.12 +0.1
26,477 - GFF1182 0.12 +1.0
26,477 - GFF1182 0.12 -0.3
26,477 - GFF1182 0.12 +0.7
26,512 + GFF1182 0.13 +0.0
26,513 - GFF1182 0.14 -0.3
26,526 + GFF1182 0.14 -1.0
26,527 - GFF1182 0.14 +0.2
26,609 - GFF1182 0.17 +0.2
26,634 + GFF1182 0.18 -0.3
26,635 - GFF1182 0.18 -0.3
26,635 - GFF1182 0.18 -0.4
26,635 - GFF1182 0.18 -0.9
26,654 - GFF1182 0.19 +0.4
26,692 - GFF1182 0.20 -0.1
26,731 + GFF1182 0.21 -0.8
26,731 + GFF1182 0.21 -0.1
26,803 - GFF1182 0.24 -2.1
26,830 + GFF1182 0.25 +0.1
26,831 - GFF1182 0.25 -0.1
26,909 - GFF1182 0.28 -0.6
26,950 - GFF1182 0.29 +0.2
26,950 - GFF1182 0.29 +0.2
26,991 + GFF1182 0.30 +0.1
27,120 + GFF1182 0.35 +0.2
27,120 + GFF1182 0.35 -0.2
27,208 + GFF1182 0.38 +0.4
27,209 - GFF1182 0.38 -0.0
27,212 + GFF1182 0.38 +0.3
27,212 + GFF1182 0.38 -0.3
27,212 + GFF1182 0.38 +0.4
27,213 - GFF1182 0.38 -0.7
27,213 - GFF1182 0.38 -0.1
27,213 - GFF1182 0.38 +0.4
27,213 - GFF1182 0.38 -0.5
27,250 + GFF1182 0.40 -0.0
27,251 - GFF1182 0.40 +1.2
27,329 + GFF1182 0.42 -0.1
27,407 + GFF1182 0.45 -0.5
27,407 + GFF1182 0.45 -1.5
27,509 - GFF1182 0.49 -0.1
27,558 + GFF1182 0.51 -0.1
27,567 + GFF1182 0.51 -0.2
27,568 - GFF1182 0.51 -0.7
27,568 - GFF1182 0.51 -1.1
27,639 + GFF1182 0.53 -1.3
27,639 + GFF1182 0.53 +0.5
27,639 + GFF1182 0.53 -0.1
27,640 - GFF1182 0.53 +0.4
27,640 - GFF1182 0.53 +0.3
27,780 + GFF1182 0.58 -0.4
27,798 + GFF1182 0.59 +0.2
27,933 + GFF1182 0.64 -0.0
27,933 + GFF1182 0.64 +2.1
27,933 + GFF1182 0.64 -0.3
27,934 - GFF1182 0.64 +0.0
27,934 - GFF1182 0.64 -0.4
27,937 - GFF1182 0.64 -0.2
27,937 - GFF1182 0.64 -0.6
27,937 - GFF1182 0.64 -0.1
28,000 + GFF1182 0.66 +0.3
28,001 - GFF1182 0.66 -0.5
28,001 - GFF1182 0.66 -0.5
28,028 + GFF1182 0.67 -0.1
28,205 - GFF1182 0.73 +0.4
28,205 - GFF1182 0.73 -0.1
28,252 - GFF1182 0.75 -0.1
28,309 + GFF1182 0.77 +0.5
28,309 + GFF1182 0.77 +0.3
28,310 - GFF1182 0.77 -0.1
28,318 + GFF1182 0.77 -0.2
28,348 + GFF1182 0.79 -0.2
28,535 + GFF1182 0.85 -0.3
28,590 + GFF1182 0.87 +0.2
28,591 - GFF1182 0.87 -0.1
28,617 + GFF1182 0.88 -0.1
28,683 + -0.2
28,684 - +1.4
28,684 - -0.4
28,687 - -0.4
28,764 + -0.7
28,820 - +0.1
28,852 + +0.5
29,273 + GFF1183 0.61 +0.8
29,279 + GFF1183 0.62 -0.4
29,315 - GFF1183 0.70 -0.1
29,371 + GFF1183 0.81 +0.6
29,372 - GFF1183 0.81 -0.3
29,372 - GFF1183 0.81 +0.2
29,395 - GFF1183 0.86 -0.4
29,493 - +0.5
29,658 + GFF1184 0.22 +0.2
29,658 + GFF1184 0.22 +0.8
29,676 - GFF1184 0.24 -0.2
29,739 + GFF1184 0.33 -1.5
29,742 - GFF1184 0.33 +0.4
29,769 + GFF1184 0.37 -0.6
29,769 + GFF1184 0.37 +0.2
29,769 + GFF1184 0.37 -0.2
29,773 - GFF1184 0.37 -0.5
29,895 + GFF1184 0.54 +1.1
29,895 + GFF1184 0.54 +0.3
29,896 - GFF1184 0.54 -0.4

Or see this region's nucleotide sequence