Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4547

Experiment: D-Trehalose 20mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4546 and Echvi_4547 are separated by 198 nucleotidesEchvi_4547 and Echvi_4548 are separated by 435 nucleotides Echvi_4546: Echvi_4546 - hypothetical protein, at 5,441,911 to 5,442,816 _4546 Echvi_4547: Echvi_4547 - hypothetical protein, at 5,443,015 to 5,443,878 _4547 Echvi_4548: Echvi_4548 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 5,444,314 to 5,445,015 _4548 Position (kb) 5443 5444Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5442.153 kb on - strand, within Echvi_4546at 5442.153 kb on - strand, within Echvi_4546at 5442.167 kb on + strand, within Echvi_4546at 5442.265 kb on + strand, within Echvi_4546at 5442.320 kb on + strand, within Echvi_4546at 5442.394 kb on - strand, within Echvi_4546at 5442.396 kb on + strand, within Echvi_4546at 5442.424 kb on + strand, within Echvi_4546at 5442.502 kb on - strand, within Echvi_4546at 5442.686 kb on + strand, within Echvi_4546at 5442.687 kb on - strand, within Echvi_4546at 5442.699 kb on + strand, within Echvi_4546at 5442.700 kb on - strand, within Echvi_4546at 5442.711 kb on + strand, within Echvi_4546at 5442.711 kb on + strand, within Echvi_4546at 5442.732 kb on + strandat 5442.836 kb on - strandat 5442.839 kb on + strandat 5442.839 kb on + strandat 5442.849 kb on + strandat 5442.881 kb on + strandat 5443.072 kb on - strandat 5443.100 kb on + strandat 5443.100 kb on + strandat 5443.100 kb on + strandat 5443.202 kb on + strand, within Echvi_4547at 5443.202 kb on + strand, within Echvi_4547at 5443.202 kb on + strand, within Echvi_4547at 5443.214 kb on + strand, within Echvi_4547at 5443.215 kb on - strand, within Echvi_4547at 5443.215 kb on - strand, within Echvi_4547at 5443.242 kb on - strand, within Echvi_4547at 5443.378 kb on + strand, within Echvi_4547at 5443.378 kb on + strand, within Echvi_4547at 5443.397 kb on + strand, within Echvi_4547at 5443.449 kb on - strand, within Echvi_4547at 5443.449 kb on - strand, within Echvi_4547at 5443.449 kb on - strand, within Echvi_4547at 5443.486 kb on - strand, within Echvi_4547at 5443.506 kb on + strand, within Echvi_4547at 5443.506 kb on + strand, within Echvi_4547at 5443.507 kb on - strand, within Echvi_4547at 5443.507 kb on - strand, within Echvi_4547at 5443.662 kb on - strand, within Echvi_4547at 5443.704 kb on - strand, within Echvi_4547at 5443.731 kb on - strand, within Echvi_4547at 5443.771 kb on - strand, within Echvi_4547at 5443.860 kb on + strandat 5443.864 kb on - strandat 5443.957 kb on + strandat 5443.981 kb on + strandat 5443.983 kb on + strandat 5444.021 kb on + strandat 5444.284 kb on + strandat 5444.352 kb on + strandat 5444.486 kb on + strand, within Echvi_4548at 5444.507 kb on - strand, within Echvi_4548at 5444.507 kb on - strand, within Echvi_4548at 5444.533 kb on - strand, within Echvi_4548at 5444.533 kb on - strand, within Echvi_4548at 5444.557 kb on - strand, within Echvi_4548at 5444.578 kb on - strand, within Echvi_4548at 5444.686 kb on - strand, within Echvi_4548at 5444.688 kb on + strand, within Echvi_4548at 5444.688 kb on + strand, within Echvi_4548at 5444.688 kb on + strand, within Echvi_4548at 5444.689 kb on - strand, within Echvi_4548at 5444.689 kb on - strand, within Echvi_4548at 5444.689 kb on - strand, within Echvi_4548at 5444.689 kb on - strand, within Echvi_4548at 5444.689 kb on - strand, within Echvi_4548at 5444.711 kb on - strand, within Echvi_4548at 5444.716 kb on - strand, within Echvi_4548

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose 20mM (C)
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5,442,153 - Echvi_4546 0.27 +0.3
5,442,153 - Echvi_4546 0.27 +0.5
5,442,167 + Echvi_4546 0.28 +0.4
5,442,265 + Echvi_4546 0.39 -1.3
5,442,320 + Echvi_4546 0.45 -1.6
5,442,394 - Echvi_4546 0.53 +0.8
5,442,396 + Echvi_4546 0.54 +0.6
5,442,424 + Echvi_4546 0.57 -0.8
5,442,502 - Echvi_4546 0.65 -2.5
5,442,686 + Echvi_4546 0.86 +1.1
5,442,687 - Echvi_4546 0.86 +3.6
5,442,699 + Echvi_4546 0.87 +1.3
5,442,700 - Echvi_4546 0.87 -0.3
5,442,711 + Echvi_4546 0.88 +2.6
5,442,711 + Echvi_4546 0.88 +1.4
5,442,732 + -0.5
5,442,836 - +0.3
5,442,839 + -1.5
5,442,839 + +0.4
5,442,849 + -2.3
5,442,881 + -0.9
5,443,072 - +1.6
5,443,100 + -0.2
5,443,100 + +0.2
5,443,100 + +1.7
5,443,202 + Echvi_4547 0.22 +0.6
5,443,202 + Echvi_4547 0.22 -0.8
5,443,202 + Echvi_4547 0.22 -0.5
5,443,214 + Echvi_4547 0.23 +1.9
5,443,215 - Echvi_4547 0.23 +3.3
5,443,215 - Echvi_4547 0.23 +0.9
5,443,242 - Echvi_4547 0.26 +2.7
5,443,378 + Echvi_4547 0.42 +0.6
5,443,378 + Echvi_4547 0.42 -0.2
5,443,397 + Echvi_4547 0.44 +0.5
5,443,449 - Echvi_4547 0.50 -0.7
5,443,449 - Echvi_4547 0.50 -0.7
5,443,449 - Echvi_4547 0.50 -0.4
5,443,486 - Echvi_4547 0.55 -1.0
5,443,506 + Echvi_4547 0.57 -0.2
5,443,506 + Echvi_4547 0.57 +1.9
5,443,507 - Echvi_4547 0.57 +1.3
5,443,507 - Echvi_4547 0.57 +0.3
5,443,662 - Echvi_4547 0.75 +0.7
5,443,704 - Echvi_4547 0.80 +0.8
5,443,731 - Echvi_4547 0.83 +1.6
5,443,771 - Echvi_4547 0.88 -0.1
5,443,860 + +1.6
5,443,864 - -2.7
5,443,957 + -2.8
5,443,981 + -0.1
5,443,983 + +0.4
5,444,021 + -0.7
5,444,284 + +0.4
5,444,352 + -0.4
5,444,486 + Echvi_4548 0.25 -0.7
5,444,507 - Echvi_4548 0.27 +1.3
5,444,507 - Echvi_4548 0.27 +0.7
5,444,533 - Echvi_4548 0.31 -0.5
5,444,533 - Echvi_4548 0.31 +3.3
5,444,557 - Echvi_4548 0.35 +0.3
5,444,578 - Echvi_4548 0.38 +1.1
5,444,686 - Echvi_4548 0.53 +0.1
5,444,688 + Echvi_4548 0.53 -1.0
5,444,688 + Echvi_4548 0.53 -0.2
5,444,688 + Echvi_4548 0.53 +1.1
5,444,689 - Echvi_4548 0.53 -0.1
5,444,689 - Echvi_4548 0.53 -1.1
5,444,689 - Echvi_4548 0.53 -0.6
5,444,689 - Echvi_4548 0.53 +1.6
5,444,689 - Echvi_4548 0.53 -0.2
5,444,711 - Echvi_4548 0.57 +1.7
5,444,716 - Echvi_4548 0.57 -0.7

Or see this region's nucleotide sequence