Experiment: D-Trehalose 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4546 and Echvi_4547 are separated by 198 nucleotides Echvi_4547 and Echvi_4548 are separated by 435 nucleotides
Echvi_4546: Echvi_4546 - hypothetical protein, at 5,441,911 to 5,442,816
_4546
Echvi_4547: Echvi_4547 - hypothetical protein, at 5,443,015 to 5,443,878
_4547
Echvi_4548: Echvi_4548 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 5,444,314 to 5,445,015
_4548
Position (kb)
5443
5444 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 5442.153 kb on - strand, within Echvi_4546 at 5442.153 kb on - strand, within Echvi_4546 at 5442.167 kb on + strand, within Echvi_4546 at 5442.265 kb on + strand, within Echvi_4546 at 5442.320 kb on + strand, within Echvi_4546 at 5442.394 kb on - strand, within Echvi_4546 at 5442.396 kb on + strand, within Echvi_4546 at 5442.424 kb on + strand, within Echvi_4546 at 5442.502 kb on - strand, within Echvi_4546 at 5442.686 kb on + strand, within Echvi_4546 at 5442.687 kb on - strand, within Echvi_4546 at 5442.699 kb on + strand, within Echvi_4546 at 5442.700 kb on - strand, within Echvi_4546 at 5442.711 kb on + strand, within Echvi_4546 at 5442.711 kb on + strand, within Echvi_4546 at 5442.732 kb on + strand at 5442.836 kb on - strand at 5442.839 kb on + strand at 5442.839 kb on + strand at 5442.849 kb on + strand at 5442.881 kb on + strand at 5443.072 kb on - strand at 5443.100 kb on + strand at 5443.100 kb on + strand at 5443.100 kb on + strand at 5443.202 kb on + strand, within Echvi_4547 at 5443.202 kb on + strand, within Echvi_4547 at 5443.202 kb on + strand, within Echvi_4547 at 5443.214 kb on + strand, within Echvi_4547 at 5443.215 kb on - strand, within Echvi_4547 at 5443.215 kb on - strand, within Echvi_4547 at 5443.242 kb on - strand, within Echvi_4547 at 5443.378 kb on + strand, within Echvi_4547 at 5443.378 kb on + strand, within Echvi_4547 at 5443.397 kb on + strand, within Echvi_4547 at 5443.449 kb on - strand, within Echvi_4547 at 5443.449 kb on - strand, within Echvi_4547 at 5443.449 kb on - strand, within Echvi_4547 at 5443.486 kb on - strand, within Echvi_4547 at 5443.506 kb on + strand, within Echvi_4547 at 5443.506 kb on + strand, within Echvi_4547 at 5443.507 kb on - strand, within Echvi_4547 at 5443.507 kb on - strand, within Echvi_4547 at 5443.662 kb on - strand, within Echvi_4547 at 5443.704 kb on - strand, within Echvi_4547 at 5443.731 kb on - strand, within Echvi_4547 at 5443.771 kb on - strand, within Echvi_4547 at 5443.860 kb on + strand at 5443.864 kb on - strand at 5443.957 kb on + strand at 5443.981 kb on + strand at 5443.983 kb on + strand at 5444.021 kb on + strand at 5444.284 kb on + strand at 5444.352 kb on + strand at 5444.486 kb on + strand, within Echvi_4548 at 5444.507 kb on - strand, within Echvi_4548 at 5444.507 kb on - strand, within Echvi_4548 at 5444.533 kb on - strand, within Echvi_4548 at 5444.533 kb on - strand, within Echvi_4548 at 5444.557 kb on - strand, within Echvi_4548 at 5444.578 kb on - strand, within Echvi_4548 at 5444.686 kb on - strand, within Echvi_4548 at 5444.688 kb on + strand, within Echvi_4548 at 5444.688 kb on + strand, within Echvi_4548 at 5444.688 kb on + strand, within Echvi_4548 at 5444.689 kb on - strand, within Echvi_4548 at 5444.689 kb on - strand, within Echvi_4548 at 5444.689 kb on - strand, within Echvi_4548 at 5444.689 kb on - strand, within Echvi_4548 at 5444.689 kb on - strand, within Echvi_4548 at 5444.711 kb on - strand, within Echvi_4548 at 5444.716 kb on - strand, within Echvi_4548
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose 20mM (C) remove 5,442,153 - Echvi_4546 0.27 +0.3 5,442,153 - Echvi_4546 0.27 +0.5 5,442,167 + Echvi_4546 0.28 +0.4 5,442,265 + Echvi_4546 0.39 -1.3 5,442,320 + Echvi_4546 0.45 -1.6 5,442,394 - Echvi_4546 0.53 +0.8 5,442,396 + Echvi_4546 0.54 +0.6 5,442,424 + Echvi_4546 0.57 -0.8 5,442,502 - Echvi_4546 0.65 -2.5 5,442,686 + Echvi_4546 0.86 +1.1 5,442,687 - Echvi_4546 0.86 +3.6 5,442,699 + Echvi_4546 0.87 +1.3 5,442,700 - Echvi_4546 0.87 -0.3 5,442,711 + Echvi_4546 0.88 +2.6 5,442,711 + Echvi_4546 0.88 +1.4 5,442,732 + -0.5 5,442,836 - +0.3 5,442,839 + -1.5 5,442,839 + +0.4 5,442,849 + -2.3 5,442,881 + -0.9 5,443,072 - +1.6 5,443,100 + -0.2 5,443,100 + +0.2 5,443,100 + +1.7 5,443,202 + Echvi_4547 0.22 +0.6 5,443,202 + Echvi_4547 0.22 -0.8 5,443,202 + Echvi_4547 0.22 -0.5 5,443,214 + Echvi_4547 0.23 +1.9 5,443,215 - Echvi_4547 0.23 +3.3 5,443,215 - Echvi_4547 0.23 +0.9 5,443,242 - Echvi_4547 0.26 +2.7 5,443,378 + Echvi_4547 0.42 +0.6 5,443,378 + Echvi_4547 0.42 -0.2 5,443,397 + Echvi_4547 0.44 +0.5 5,443,449 - Echvi_4547 0.50 -0.7 5,443,449 - Echvi_4547 0.50 -0.7 5,443,449 - Echvi_4547 0.50 -0.4 5,443,486 - Echvi_4547 0.55 -1.0 5,443,506 + Echvi_4547 0.57 -0.2 5,443,506 + Echvi_4547 0.57 +1.9 5,443,507 - Echvi_4547 0.57 +1.3 5,443,507 - Echvi_4547 0.57 +0.3 5,443,662 - Echvi_4547 0.75 +0.7 5,443,704 - Echvi_4547 0.80 +0.8 5,443,731 - Echvi_4547 0.83 +1.6 5,443,771 - Echvi_4547 0.88 -0.1 5,443,860 + +1.6 5,443,864 - -2.7 5,443,957 + -2.8 5,443,981 + -0.1 5,443,983 + +0.4 5,444,021 + -0.7 5,444,284 + +0.4 5,444,352 + -0.4 5,444,486 + Echvi_4548 0.25 -0.7 5,444,507 - Echvi_4548 0.27 +1.3 5,444,507 - Echvi_4548 0.27 +0.7 5,444,533 - Echvi_4548 0.31 -0.5 5,444,533 - Echvi_4548 0.31 +3.3 5,444,557 - Echvi_4548 0.35 +0.3 5,444,578 - Echvi_4548 0.38 +1.1 5,444,686 - Echvi_4548 0.53 +0.1 5,444,688 + Echvi_4548 0.53 -1.0 5,444,688 + Echvi_4548 0.53 -0.2 5,444,688 + Echvi_4548 0.53 +1.1 5,444,689 - Echvi_4548 0.53 -0.1 5,444,689 - Echvi_4548 0.53 -1.1 5,444,689 - Echvi_4548 0.53 -0.6 5,444,689 - Echvi_4548 0.53 +1.6 5,444,689 - Echvi_4548 0.53 -0.2 5,444,711 - Echvi_4548 0.57 +1.7 5,444,716 - Echvi_4548 0.57 -0.7
Or see this region's nucleotide sequence