Experiment: D-Trehalose 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0518 and Echvi_0519 are separated by 3 nucleotides Echvi_0519 and Echvi_0520 are separated by 0 nucleotides
Echvi_0518: Echvi_0518 - Uncharacterized protein conserved in bacteria, at 581,141 to 583,495
_0518
Echvi_0519: Echvi_0519 - Beta-xylosidase, at 583,499 to 584,986
_0519
Echvi_0520: Echvi_0520 - Beta-xylosidase, at 584,987 to 585,970
_0520
Position (kb) 583
584
585 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 582.561 kb on - strand, within Echvi_0518 at 582.642 kb on - strand, within Echvi_0518 at 582.718 kb on + strand, within Echvi_0518 at 582.788 kb on - strand, within Echvi_0518 at 582.788 kb on - strand, within Echvi_0518 at 582.878 kb on - strand, within Echvi_0518 at 582.897 kb on + strand, within Echvi_0518 at 582.923 kb on + strand, within Echvi_0518 at 582.923 kb on + strand, within Echvi_0518 at 582.924 kb on - strand, within Echvi_0518 at 582.924 kb on - strand, within Echvi_0518 at 582.957 kb on + strand, within Echvi_0518 at 582.957 kb on + strand, within Echvi_0518 at 582.958 kb on - strand, within Echvi_0518 at 582.994 kb on + strand, within Echvi_0518 at 582.995 kb on - strand, within Echvi_0518 at 582.995 kb on - strand, within Echvi_0518 at 582.995 kb on - strand, within Echvi_0518 at 583.098 kb on + strand, within Echvi_0518 at 583.099 kb on - strand, within Echvi_0518 at 583.144 kb on + strand, within Echvi_0518 at 583.145 kb on - strand, within Echvi_0518 at 583.145 kb on - strand, within Echvi_0518 at 583.145 kb on - strand, within Echvi_0518 at 583.145 kb on - strand, within Echvi_0518 at 583.146 kb on + strand, within Echvi_0518 at 583.146 kb on + strand, within Echvi_0518 at 583.146 kb on + strand, within Echvi_0518 at 583.147 kb on - strand, within Echvi_0518 at 583.147 kb on - strand, within Echvi_0518 at 583.188 kb on + strand, within Echvi_0518 at 583.188 kb on + strand, within Echvi_0518 at 583.189 kb on - strand, within Echvi_0518 at 583.212 kb on + strand, within Echvi_0518 at 583.212 kb on + strand, within Echvi_0518 at 583.213 kb on - strand, within Echvi_0518 at 583.281 kb on - strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.299 kb on + strand at 583.300 kb on - strand at 583.300 kb on - strand at 583.300 kb on - strand at 583.300 kb on - strand at 583.300 kb on - strand at 583.300 kb on - strand at 583.337 kb on - strand at 583.338 kb on + strand at 583.339 kb on - strand at 583.388 kb on + strand at 583.412 kb on + strand at 583.501 kb on - strand at 583.618 kb on + strand at 583.618 kb on + strand at 583.618 kb on + strand at 583.622 kb on + strand at 583.622 kb on + strand at 583.640 kb on + strand at 583.640 kb on + strand at 583.640 kb on + strand at 583.640 kb on + strand at 583.640 kb on + strand at 583.641 kb on - strand at 583.641 kb on - strand at 583.727 kb on + strand, within Echvi_0519 at 583.738 kb on + strand, within Echvi_0519 at 583.738 kb on + strand, within Echvi_0519 at 583.790 kb on + strand, within Echvi_0519 at 583.791 kb on - strand, within Echvi_0519 at 583.791 kb on - strand, within Echvi_0519 at 583.791 kb on - strand, within Echvi_0519 at 583.920 kb on + strand, within Echvi_0519 at 583.991 kb on - strand, within Echvi_0519 at 584.138 kb on - strand, within Echvi_0519 at 584.140 kb on - strand, within Echvi_0519 at 584.160 kb on + strand, within Echvi_0519 at 584.160 kb on + strand, within Echvi_0519 at 584.178 kb on + strand, within Echvi_0519 at 584.178 kb on + strand, within Echvi_0519 at 584.178 kb on + strand, within Echvi_0519 at 584.178 kb on + strand, within Echvi_0519 at 584.178 kb on + strand, within Echvi_0519 at 584.179 kb on - strand, within Echvi_0519 at 584.179 kb on - strand, within Echvi_0519 at 584.325 kb on + strand, within Echvi_0519 at 584.326 kb on - strand, within Echvi_0519 at 584.326 kb on - strand, within Echvi_0519 at 584.326 kb on - strand, within Echvi_0519 at 584.326 kb on - strand at 584.326 kb on - strand, within Echvi_0519 at 584.327 kb on + strand, within Echvi_0519 at 584.327 kb on + strand, within Echvi_0519 at 584.327 kb on + strand, within Echvi_0519 at 584.327 kb on + strand, within Echvi_0519 at 584.327 kb on + strand, within Echvi_0519 at 584.328 kb on - strand, within Echvi_0519 at 584.329 kb on + strand, within Echvi_0519 at 584.329 kb on + strand, within Echvi_0519 at 584.329 kb on + strand, within Echvi_0519 at 584.330 kb on - strand, within Echvi_0519 at 584.337 kb on + strand, within Echvi_0519 at 584.349 kb on + strand, within Echvi_0519 at 584.352 kb on + strand, within Echvi_0519 at 584.352 kb on + strand, within Echvi_0519 at 584.352 kb on + strand, within Echvi_0519 at 584.353 kb on - strand, within Echvi_0519 at 584.353 kb on - strand, within Echvi_0519 at 584.353 kb on - strand, within Echvi_0519 at 584.378 kb on + strand, within Echvi_0519 at 584.422 kb on + strand, within Echvi_0519 at 584.422 kb on + strand, within Echvi_0519 at 584.483 kb on + strand, within Echvi_0519 at 584.484 kb on - strand, within Echvi_0519 at 584.526 kb on + strand, within Echvi_0519 at 584.526 kb on + strand, within Echvi_0519 at 584.526 kb on + strand, within Echvi_0519 at 584.526 kb on + strand, within Echvi_0519 at 584.526 kb on + strand, within Echvi_0519 at 584.527 kb on - strand, within Echvi_0519 at 584.527 kb on - strand, within Echvi_0519 at 584.527 kb on - strand, within Echvi_0519 at 584.529 kb on + strand, within Echvi_0519 at 584.529 kb on + strand, within Echvi_0519 at 584.529 kb on + strand, within Echvi_0519 at 584.530 kb on - strand, within Echvi_0519 at 584.530 kb on - strand, within Echvi_0519 at 584.536 kb on + strand, within Echvi_0519 at 584.537 kb on - strand, within Echvi_0519 at 584.537 kb on - strand, within Echvi_0519 at 584.562 kb on + strand, within Echvi_0519 at 584.608 kb on + strand, within Echvi_0519 at 584.609 kb on - strand, within Echvi_0519 at 584.640 kb on + strand, within Echvi_0519 at 584.640 kb on + strand, within Echvi_0519 at 584.704 kb on + strand, within Echvi_0519 at 584.704 kb on + strand, within Echvi_0519 at 584.721 kb on + strand, within Echvi_0519 at 584.722 kb on - strand, within Echvi_0519 at 584.722 kb on - strand, within Echvi_0519 at 584.737 kb on + strand, within Echvi_0519 at 584.739 kb on + strand, within Echvi_0519 at 584.740 kb on - strand, within Echvi_0519 at 584.745 kb on + strand, within Echvi_0519 at 584.746 kb on - strand, within Echvi_0519 at 584.765 kb on + strand, within Echvi_0519 at 584.768 kb on + strand, within Echvi_0519 at 584.788 kb on + strand, within Echvi_0519 at 584.788 kb on + strand, within Echvi_0519 at 584.789 kb on - strand, within Echvi_0519 at 584.790 kb on + strand, within Echvi_0519 at 584.790 kb on + strand, within Echvi_0519 at 584.791 kb on - strand, within Echvi_0519 at 584.791 kb on - strand, within Echvi_0519 at 584.828 kb on - strand, within Echvi_0519 at 584.835 kb on + strand, within Echvi_0519 at 584.835 kb on + strand, within Echvi_0519 at 584.836 kb on - strand, within Echvi_0519 at 584.836 kb on - strand, within Echvi_0519 at 584.836 kb on - strand, within Echvi_0519 at 584.839 kb on + strand at 584.840 kb on - strand at 584.893 kb on + strand at 584.893 kb on + strand at 584.948 kb on + strand at 584.948 kb on + strand at 584.949 kb on - strand at 584.988 kb on + strand at 584.988 kb on + strand at 584.996 kb on + strand at 584.996 kb on + strand at 584.996 kb on + strand at 584.996 kb on + strand at 584.997 kb on - strand at 585.022 kb on + strand at 585.043 kb on + strand at 585.043 kb on + strand at 585.044 kb on - strand at 585.078 kb on + strand at 585.078 kb on + strand at 585.117 kb on + strand, within Echvi_0520 at 585.127 kb on + strand, within Echvi_0520 at 585.127 kb on + strand, within Echvi_0520 at 585.172 kb on + strand, within Echvi_0520 at 585.173 kb on - strand, within Echvi_0520 at 585.186 kb on + strand, within Echvi_0520 at 585.186 kb on + strand, within Echvi_0520 at 585.187 kb on - strand, within Echvi_0520 at 585.187 kb on - strand, within Echvi_0520 at 585.190 kb on + strand, within Echvi_0520 at 585.190 kb on + strand, within Echvi_0520 at 585.190 kb on + strand, within Echvi_0520 at 585.190 kb on + strand, within Echvi_0520 at 585.191 kb on - strand, within Echvi_0520 at 585.209 kb on + strand, within Echvi_0520 at 585.233 kb on - strand, within Echvi_0520 at 585.253 kb on + strand, within Echvi_0520 at 585.254 kb on - strand, within Echvi_0520 at 585.256 kb on - strand, within Echvi_0520 at 585.306 kb on + strand, within Echvi_0520 at 585.306 kb on + strand, within Echvi_0520 at 585.306 kb on + strand, within Echvi_0520 at 585.306 kb on + strand, within Echvi_0520 at 585.307 kb on - strand, within Echvi_0520 at 585.403 kb on + strand, within Echvi_0520 at 585.403 kb on + strand, within Echvi_0520 at 585.404 kb on - strand, within Echvi_0520 at 585.405 kb on + strand, within Echvi_0520 at 585.439 kb on + strand, within Echvi_0520 at 585.524 kb on - strand, within Echvi_0520 at 585.610 kb on + strand, within Echvi_0520 at 585.678 kb on + strand, within Echvi_0520 at 585.679 kb on - strand, within Echvi_0520 at 585.679 kb on - strand, within Echvi_0520 at 585.679 kb on - strand, within Echvi_0520 at 585.687 kb on + strand, within Echvi_0520 at 585.691 kb on - strand, within Echvi_0520 at 585.858 kb on + strand, within Echvi_0520 at 585.858 kb on + strand, within Echvi_0520 at 585.861 kb on + strand, within Echvi_0520 at 585.861 kb on + strand, within Echvi_0520 at 585.861 kb on + strand, within Echvi_0520 at 585.862 kb on - strand, within Echvi_0520 at 585.862 kb on - strand, within Echvi_0520 at 585.952 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose 20mM (C) remove 582,561 - Echvi_0518 0.60 +0.5 582,642 - Echvi_0518 0.64 -2.4 582,718 + Echvi_0518 0.67 -0.1 582,788 - Echvi_0518 0.70 -0.3 582,788 - Echvi_0518 0.70 -0.3 582,878 - Echvi_0518 0.74 -1.1 582,897 + Echvi_0518 0.75 -0.2 582,923 + Echvi_0518 0.76 +0.5 582,923 + Echvi_0518 0.76 -2.1 582,924 - Echvi_0518 0.76 -1.7 582,924 - Echvi_0518 0.76 +1.5 582,957 + Echvi_0518 0.77 -0.5 582,957 + Echvi_0518 0.77 -1.2 582,958 - Echvi_0518 0.77 -0.5 582,994 + Echvi_0518 0.79 +0.1 582,995 - Echvi_0518 0.79 +1.4 582,995 - Echvi_0518 0.79 -1.3 582,995 - Echvi_0518 0.79 +0.1 583,098 + Echvi_0518 0.83 +0.3 583,099 - Echvi_0518 0.83 +1.1 583,144 + Echvi_0518 0.85 -2.1 583,145 - Echvi_0518 0.85 -0.7 583,145 - Echvi_0518 0.85 +0.9 583,145 - Echvi_0518 0.85 -0.1 583,145 - Echvi_0518 0.85 -0.3 583,146 + Echvi_0518 0.85 +0.5 583,146 + Echvi_0518 0.85 -0.2 583,146 + Echvi_0518 0.85 -0.3 583,147 - Echvi_0518 0.85 -2.6 583,147 - Echvi_0518 0.85 -0.1 583,188 + Echvi_0518 0.87 -1.0 583,188 + Echvi_0518 0.87 +1.5 583,189 - Echvi_0518 0.87 -2.6 583,212 + Echvi_0518 0.88 -0.5 583,212 + Echvi_0518 0.88 +2.9 583,213 - Echvi_0518 0.88 +1.9 583,281 - +0.9 583,299 + -2.4 583,299 + +0.2 583,299 + +1.7 583,299 + -0.8 583,299 + -0.7 583,299 + -3.2 583,299 + -0.1 583,299 + +0.0 583,299 + +0.2 583,299 + -0.2 583,299 + -0.1 583,299 + -0.7 583,299 + -1.1 583,299 + -0.5 583,300 - +0.9 583,300 - +0.4 583,300 - +0.3 583,300 - +0.8 583,300 - -1.8 583,300 - +0.5 583,337 - -1.5 583,338 + -0.2 583,339 - -0.1 583,388 + -0.4 583,412 + +2.5 583,501 - +0.7 583,618 + +0.5 583,618 + +1.0 583,618 + -1.1 583,622 + -0.8 583,622 + -0.0 583,640 + -2.0 583,640 + +1.1 583,640 + +1.8 583,640 + +0.6 583,640 + +1.1 583,641 - -1.5 583,641 - +0.5 583,727 + Echvi_0519 0.15 -0.9 583,738 + Echvi_0519 0.16 -0.1 583,738 + Echvi_0519 0.16 +1.6 583,790 + Echvi_0519 0.20 +0.7 583,791 - Echvi_0519 0.20 +0.2 583,791 - Echvi_0519 0.20 +0.1 583,791 - Echvi_0519 0.20 -0.9 583,920 + Echvi_0519 0.28 +1.0 583,991 - Echvi_0519 0.33 +0.5 584,138 - Echvi_0519 0.43 -0.1 584,140 - Echvi_0519 0.43 -2.1 584,160 + Echvi_0519 0.44 -0.4 584,160 + Echvi_0519 0.44 +1.2 584,178 + Echvi_0519 0.46 +1.1 584,178 + Echvi_0519 0.46 -2.4 584,178 + Echvi_0519 0.46 +0.0 584,178 + Echvi_0519 0.46 -1.6 584,178 + Echvi_0519 0.46 +2.3 584,179 - Echvi_0519 0.46 +1.5 584,179 - Echvi_0519 0.46 -2.1 584,325 + Echvi_0519 0.56 -0.9 584,326 - Echvi_0519 0.56 -1.7 584,326 - Echvi_0519 0.56 -1.3 584,326 - Echvi_0519 0.56 -0.9 584,326 - +3.6 584,326 - Echvi_0519 0.56 -1.5 584,327 + Echvi_0519 0.56 -0.1 584,327 + Echvi_0519 0.56 -0.4 584,327 + Echvi_0519 0.56 -2.2 584,327 + Echvi_0519 0.56 -0.7 584,327 + Echvi_0519 0.56 +1.5 584,328 - Echvi_0519 0.56 -1.1 584,329 + Echvi_0519 0.56 -3.0 584,329 + Echvi_0519 0.56 -0.4 584,329 + Echvi_0519 0.56 +0.7 584,330 - Echvi_0519 0.56 -0.1 584,337 + Echvi_0519 0.56 -0.7 584,349 + Echvi_0519 0.57 -0.5 584,352 + Echvi_0519 0.57 -0.5 584,352 + Echvi_0519 0.57 -0.1 584,352 + Echvi_0519 0.57 +3.0 584,353 - Echvi_0519 0.57 -0.1 584,353 - Echvi_0519 0.57 +1.5 584,353 - Echvi_0519 0.57 +1.2 584,378 + Echvi_0519 0.59 +0.0 584,422 + Echvi_0519 0.62 -1.6 584,422 + Echvi_0519 0.62 -2.1 584,483 + Echvi_0519 0.66 -3.7 584,484 - Echvi_0519 0.66 -0.1 584,526 + Echvi_0519 0.69 -1.6 584,526 + Echvi_0519 0.69 +0.1 584,526 + Echvi_0519 0.69 +0.1 584,526 + Echvi_0519 0.69 -1.0 584,526 + Echvi_0519 0.69 +0.6 584,527 - Echvi_0519 0.69 +0.9 584,527 - Echvi_0519 0.69 -1.1 584,527 - Echvi_0519 0.69 +0.1 584,529 + Echvi_0519 0.69 +1.5 584,529 + Echvi_0519 0.69 +0.5 584,529 + Echvi_0519 0.69 +0.3 584,530 - Echvi_0519 0.69 +1.5 584,530 - Echvi_0519 0.69 +1.3 584,536 + Echvi_0519 0.70 +0.1 584,537 - Echvi_0519 0.70 +1.7 584,537 - Echvi_0519 0.70 -0.9 584,562 + Echvi_0519 0.71 -0.1 584,608 + Echvi_0519 0.75 -0.3 584,609 - Echvi_0519 0.75 +0.5 584,640 + Echvi_0519 0.77 -2.0 584,640 + Echvi_0519 0.77 -0.6 584,704 + Echvi_0519 0.81 -0.4 584,704 + Echvi_0519 0.81 +1.3 584,721 + Echvi_0519 0.82 -3.5 584,722 - Echvi_0519 0.82 -1.1 584,722 - Echvi_0519 0.82 -1.9 584,737 + Echvi_0519 0.83 -1.9 584,739 + Echvi_0519 0.83 +0.9 584,740 - Echvi_0519 0.83 +1.5 584,745 + Echvi_0519 0.84 +0.3 584,746 - Echvi_0519 0.84 +0.5 584,765 + Echvi_0519 0.85 +0.0 584,768 + Echvi_0519 0.85 -1.5 584,788 + Echvi_0519 0.87 +0.5 584,788 + Echvi_0519 0.87 -0.3 584,789 - Echvi_0519 0.87 -1.3 584,790 + Echvi_0519 0.87 +0.1 584,790 + Echvi_0519 0.87 -0.5 584,791 - Echvi_0519 0.87 -0.3 584,791 - Echvi_0519 0.87 -1.8 584,828 - Echvi_0519 0.89 +1.5 584,835 + Echvi_0519 0.90 -0.2 584,835 + Echvi_0519 0.90 -0.9 584,836 - Echvi_0519 0.90 -0.6 584,836 - Echvi_0519 0.90 -1.1 584,836 - Echvi_0519 0.90 -2.8 584,839 + +0.1 584,840 - +0.7 584,893 + +1.5 584,893 + -0.1 584,948 + -0.1 584,948 + +0.4 584,949 - -1.1 584,988 + +0.9 584,988 + -0.1 584,996 + -0.6 584,996 + -2.9 584,996 + -1.1 584,996 + -1.1 584,997 - +2.5 585,022 + -2.6 585,043 + -1.1 585,043 + -1.5 585,044 - -1.0 585,078 + -1.2 585,078 + -0.3 585,117 + Echvi_0520 0.13 -0.5 585,127 + Echvi_0520 0.14 +0.5 585,127 + Echvi_0520 0.14 -1.7 585,172 + Echvi_0520 0.19 -0.5 585,173 - Echvi_0520 0.19 +2.5 585,186 + Echvi_0520 0.20 -2.2 585,186 + Echvi_0520 0.20 -1.1 585,187 - Echvi_0520 0.20 +2.3 585,187 - Echvi_0520 0.20 -0.4 585,190 + Echvi_0520 0.21 +1.6 585,190 + Echvi_0520 0.21 +0.5 585,190 + Echvi_0520 0.21 -0.3 585,190 + Echvi_0520 0.21 +0.3 585,191 - Echvi_0520 0.21 -0.4 585,209 + Echvi_0520 0.23 +2.3 585,233 - Echvi_0520 0.25 -1.1 585,253 + Echvi_0520 0.27 +0.9 585,254 - Echvi_0520 0.27 -0.5 585,256 - Echvi_0520 0.27 -0.7 585,306 + Echvi_0520 0.32 -0.7 585,306 + Echvi_0520 0.32 +0.2 585,306 + Echvi_0520 0.32 +1.5 585,306 + Echvi_0520 0.32 -0.3 585,307 - Echvi_0520 0.33 +2.3 585,403 + Echvi_0520 0.42 +0.8 585,403 + Echvi_0520 0.42 -0.8 585,404 - Echvi_0520 0.42 +0.7 585,405 + Echvi_0520 0.42 +1.1 585,439 + Echvi_0520 0.46 +1.5 585,524 - Echvi_0520 0.55 -0.3 585,610 + Echvi_0520 0.63 +0.3 585,678 + Echvi_0520 0.70 +1.5 585,679 - Echvi_0520 0.70 -0.3 585,679 - Echvi_0520 0.70 +1.1 585,679 - Echvi_0520 0.70 -0.4 585,687 + Echvi_0520 0.71 -0.7 585,691 - Echvi_0520 0.72 +0.1 585,858 + Echvi_0520 0.89 -0.9 585,858 + Echvi_0520 0.89 -0.4 585,861 + Echvi_0520 0.89 -0.1 585,861 + Echvi_0520 0.89 -0.8 585,861 + Echvi_0520 0.89 -0.0 585,862 - Echvi_0520 0.89 -0.9 585,862 - Echvi_0520 0.89 -0.1 585,952 + -0.3
Or see this region's nucleotide sequence