Experiment: D-Trehalose 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0480 and Echvi_0481 are separated by 183 nucleotides Echvi_0481 and Echvi_0482 are separated by 221 nucleotides Echvi_0482 and Echvi_0483 are separated by 76 nucleotides
Echvi_0480: Echvi_0480 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 528,328 to 529,257
_0480
Echvi_0481: Echvi_0481 - NAD-dependent aldehyde dehydrogenases, at 529,441 to 530,970
_0481
Echvi_0482: Echvi_0482 - Uncharacterized protein conserved in bacteria, at 531,192 to 531,626
_0482
Echvi_0483: Echvi_0483 - hypothetical protein, at 531,703 to 532,836
_0483
Position (kb) 529
530
531 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 528.511 kb on - strand, within Echvi_0480 at 528.598 kb on + strand, within Echvi_0480 at 528.599 kb on - strand, within Echvi_0480 at 528.599 kb on - strand, within Echvi_0480 at 528.604 kb on + strand, within Echvi_0480 at 528.604 kb on + strand, within Echvi_0480 at 528.632 kb on + strand, within Echvi_0480 at 528.637 kb on + strand, within Echvi_0480 at 528.822 kb on + strand, within Echvi_0480 at 528.822 kb on + strand, within Echvi_0480 at 528.888 kb on - strand, within Echvi_0480 at 528.888 kb on - strand, within Echvi_0480 at 528.988 kb on - strand, within Echvi_0480 at 528.989 kb on + strand, within Echvi_0480 at 528.989 kb on + strand, within Echvi_0480 at 528.990 kb on - strand, within Echvi_0480 at 528.990 kb on - strand, within Echvi_0480 at 528.990 kb on - strand, within Echvi_0480 at 529.134 kb on - strand, within Echvi_0480 at 529.138 kb on - strand, within Echvi_0480 at 529.138 kb on - strand, within Echvi_0480 at 529.226 kb on + strand at 529.227 kb on - strand at 529.239 kb on + strand at 529.240 kb on - strand at 529.240 kb on - strand at 529.262 kb on - strand at 529.274 kb on - strand at 529.286 kb on + strand at 529.287 kb on - strand at 529.287 kb on - strand at 529.338 kb on + strand at 529.354 kb on + strand at 529.399 kb on - strand at 529.399 kb on - strand at 529.438 kb on - strand at 529.438 kb on - strand at 529.446 kb on + strand at 529.447 kb on - strand at 529.447 kb on - strand at 529.451 kb on + strand at 529.505 kb on - strand at 529.505 kb on - strand at 529.696 kb on - strand, within Echvi_0481 at 529.720 kb on - strand, within Echvi_0481 at 529.739 kb on - strand, within Echvi_0481 at 529.739 kb on - strand, within Echvi_0481 at 529.742 kb on + strand, within Echvi_0481 at 529.743 kb on - strand, within Echvi_0481 at 529.751 kb on + strand, within Echvi_0481 at 529.751 kb on + strand, within Echvi_0481 at 529.764 kb on + strand, within Echvi_0481 at 529.778 kb on + strand, within Echvi_0481 at 529.885 kb on - strand, within Echvi_0481 at 529.885 kb on - strand, within Echvi_0481 at 530.001 kb on + strand, within Echvi_0481 at 530.001 kb on + strand, within Echvi_0481 at 530.201 kb on - strand, within Echvi_0481 at 530.389 kb on + strand, within Echvi_0481 at 530.390 kb on - strand, within Echvi_0481 at 530.411 kb on + strand, within Echvi_0481 at 530.512 kb on + strand, within Echvi_0481 at 530.512 kb on + strand, within Echvi_0481 at 530.512 kb on + strand, within Echvi_0481 at 530.513 kb on - strand, within Echvi_0481 at 530.600 kb on - strand, within Echvi_0481 at 530.610 kb on + strand, within Echvi_0481 at 530.611 kb on - strand, within Echvi_0481 at 530.611 kb on - strand, within Echvi_0481 at 530.611 kb on - strand, within Echvi_0481 at 530.732 kb on - strand, within Echvi_0481 at 530.732 kb on - strand, within Echvi_0481 at 530.732 kb on - strand, within Echvi_0481 at 530.739 kb on - strand, within Echvi_0481 at 530.739 kb on - strand, within Echvi_0481 at 530.751 kb on - strand, within Echvi_0481 at 530.817 kb on - strand, within Echvi_0481 at 530.958 kb on - strand at 530.984 kb on + strand at 530.994 kb on + strand at 531.003 kb on + strand at 531.007 kb on + strand at 531.007 kb on + strand at 531.007 kb on + strand at 531.010 kb on - strand at 531.010 kb on - strand at 531.010 kb on - strand at 531.101 kb on - strand at 531.148 kb on + strand at 531.153 kb on + strand at 531.207 kb on - strand at 531.216 kb on - strand at 531.216 kb on - strand at 531.268 kb on + strand, within Echvi_0482 at 531.442 kb on - strand, within Echvi_0482 at 531.442 kb on - strand, within Echvi_0482 at 531.622 kb on + strand at 531.622 kb on + strand at 531.622 kb on + strand at 531.623 kb on - strand at 531.623 kb on - strand at 531.625 kb on - strand at 531.625 kb on - strand at 531.625 kb on - strand at 531.626 kb on + strand at 531.627 kb on + strand at 531.627 kb on + strand at 531.627 kb on + strand at 531.627 kb on + strand at 531.627 kb on + strand at 531.628 kb on - strand at 531.628 kb on - strand at 531.628 kb on - strand at 531.631 kb on + strand at 531.631 kb on + strand at 531.632 kb on - strand at 531.632 kb on - strand at 531.637 kb on - strand at 531.647 kb on + strand at 531.694 kb on + strand at 531.695 kb on - strand at 531.695 kb on - strand at 531.831 kb on + strand, within Echvi_0483 at 531.832 kb on - strand, within Echvi_0483 at 531.916 kb on - strand, within Echvi_0483
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose 20mM (C) remove 528,511 - Echvi_0480 0.20 -1.5 528,598 + Echvi_0480 0.29 -0.5 528,599 - Echvi_0480 0.29 -0.1 528,599 - Echvi_0480 0.29 -2.5 528,604 + Echvi_0480 0.30 +0.0 528,604 + Echvi_0480 0.30 +0.0 528,632 + Echvi_0480 0.33 +0.1 528,637 + Echvi_0480 0.33 +0.3 528,822 + Echvi_0480 0.53 -0.1 528,822 + Echvi_0480 0.53 -3.4 528,888 - Echvi_0480 0.60 -1.1 528,888 - Echvi_0480 0.60 -2.0 528,988 - Echvi_0480 0.71 +1.0 528,989 + Echvi_0480 0.71 +0.4 528,989 + Echvi_0480 0.71 -0.3 528,990 - Echvi_0480 0.71 +0.7 528,990 - Echvi_0480 0.71 -1.3 528,990 - Echvi_0480 0.71 +0.3 529,134 - Echvi_0480 0.87 +0.4 529,138 - Echvi_0480 0.87 +0.3 529,138 - Echvi_0480 0.87 +0.6 529,226 + -0.1 529,227 - -1.3 529,239 + -1.2 529,240 - -1.5 529,240 - +0.7 529,262 - +0.9 529,274 - +3.8 529,286 + -0.2 529,287 - +0.6 529,287 - -0.5 529,338 + -0.3 529,354 + -1.3 529,399 - -0.9 529,399 - -0.9 529,438 - +0.1 529,438 - +0.9 529,446 + -1.6 529,447 - -0.4 529,447 - +1.5 529,451 + +0.5 529,505 - -0.2 529,505 - +0.9 529,696 - Echvi_0481 0.17 -2.6 529,720 - Echvi_0481 0.18 -0.3 529,739 - Echvi_0481 0.19 +3.3 529,739 - Echvi_0481 0.19 +1.9 529,742 + Echvi_0481 0.20 +0.8 529,743 - Echvi_0481 0.20 +3.1 529,751 + Echvi_0481 0.20 +3.5 529,751 + Echvi_0481 0.20 +1.3 529,764 + Echvi_0481 0.21 +0.2 529,778 + Echvi_0481 0.22 +0.5 529,885 - Echvi_0481 0.29 -0.9 529,885 - Echvi_0481 0.29 +1.0 530,001 + Echvi_0481 0.37 +0.9 530,001 + Echvi_0481 0.37 +0.8 530,201 - Echvi_0481 0.50 -0.4 530,389 + Echvi_0481 0.62 +1.9 530,390 - Echvi_0481 0.62 +0.3 530,411 + Echvi_0481 0.63 +0.7 530,512 + Echvi_0481 0.70 +0.8 530,512 + Echvi_0481 0.70 -1.5 530,512 + Echvi_0481 0.70 -0.4 530,513 - Echvi_0481 0.70 -1.0 530,600 - Echvi_0481 0.76 +1.0 530,610 + Echvi_0481 0.76 +2.5 530,611 - Echvi_0481 0.76 +1.4 530,611 - Echvi_0481 0.76 -0.1 530,611 - Echvi_0481 0.76 -0.1 530,732 - Echvi_0481 0.84 +1.0 530,732 - Echvi_0481 0.84 -1.8 530,732 - Echvi_0481 0.84 +1.0 530,739 - Echvi_0481 0.85 -0.3 530,739 - Echvi_0481 0.85 -0.7 530,751 - Echvi_0481 0.86 -0.2 530,817 - Echvi_0481 0.90 +3.0 530,958 - -3.0 530,984 + +0.4 530,994 + +1.6 531,003 + -0.8 531,007 + +3.2 531,007 + +0.8 531,007 + -0.1 531,010 - +0.3 531,010 - -0.2 531,010 - +0.7 531,101 - +0.2 531,148 + +0.4 531,153 + +1.1 531,207 - +0.3 531,216 - -1.6 531,216 - -2.3 531,268 + Echvi_0482 0.17 +0.3 531,442 - Echvi_0482 0.57 -1.0 531,442 - Echvi_0482 0.57 -0.5 531,622 + -0.4 531,622 + +0.6 531,622 + +0.5 531,623 - -1.0 531,623 - -0.5 531,625 - +1.5 531,625 - -1.2 531,625 - +2.1 531,626 + +0.5 531,627 + +2.5 531,627 + -2.8 531,627 + +0.8 531,627 + +1.7 531,627 + -0.3 531,628 - +1.2 531,628 - -0.3 531,628 - -2.2 531,631 + -1.7 531,631 + -0.2 531,632 - +0.6 531,632 - -0.9 531,637 - +1.1 531,647 + -0.4 531,694 + +0.2 531,695 - +0.5 531,695 - +2.1 531,831 + Echvi_0483 0.11 +0.7 531,832 - Echvi_0483 0.11 -0.3 531,916 - Echvi_0483 0.19 +0.3
Or see this region's nucleotide sequence