Experiment: D-Trehalose 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0460 and Echvi_0461 are separated by 14 nucleotides Echvi_0461 and Echvi_0462 are separated by 582 nucleotides Echvi_0462 and Echvi_0463 are separated by 224 nucleotides
Echvi_0460: Echvi_0460 - hypothetical protein, at 503,945 to 504,829
_0460
Echvi_0461: Echvi_0461 - Site-specific recombinase XerD, at 504,844 to 505,023
_0461
Echvi_0462: Echvi_0462 - hypothetical protein, at 505,606 to 505,863
_0462
Echvi_0463: Echvi_0463 - Zinc metalloprotease (elastase), at 506,088 to 508,676
_0463
Position (kb) 505
506 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 505.012 kb on + strand at 505.012 kb on + strand at 505.034 kb on + strand at 505.034 kb on + strand at 505.035 kb on - strand at 505.039 kb on + strand at 505.040 kb on - strand at 505.040 kb on - strand at 505.203 kb on + strand at 505.246 kb on - strand at 505.255 kb on + strand at 505.256 kb on - strand at 505.285 kb on + strand at 505.285 kb on + strand at 505.285 kb on + strand at 505.285 kb on + strand at 505.286 kb on - strand at 505.286 kb on - strand at 505.300 kb on + strand at 505.306 kb on - strand at 505.306 kb on - strand at 505.306 kb on - strand at 505.307 kb on + strand at 505.308 kb on - strand at 505.308 kb on - strand at 505.310 kb on + strand at 505.311 kb on - strand at 505.318 kb on + strand at 505.318 kb on + strand at 505.318 kb on + strand at 505.318 kb on + strand at 505.318 kb on + strand at 505.318 kb on + strand at 505.319 kb on - strand at 505.319 kb on - strand at 505.319 kb on - strand at 505.319 kb on - strand at 505.319 kb on - strand at 505.358 kb on - strand at 505.358 kb on - strand at 505.360 kb on + strand at 505.361 kb on - strand at 505.362 kb on + strand at 505.385 kb on - strand at 505.433 kb on + strand at 505.434 kb on - strand at 505.434 kb on - strand at 505.443 kb on + strand at 505.444 kb on - strand at 505.446 kb on - strand at 505.449 kb on + strand at 505.450 kb on - strand at 505.452 kb on + strand at 505.494 kb on - strand at 505.495 kb on + strand at 505.495 kb on + strand at 505.496 kb on - strand at 505.508 kb on + strand at 505.509 kb on - strand at 505.517 kb on + strand at 505.559 kb on + strand at 505.559 kb on + strand at 505.559 kb on + strand at 505.560 kb on - strand at 505.583 kb on - strand at 505.583 kb on - strand at 505.674 kb on + strand, within Echvi_0462 at 505.674 kb on + strand, within Echvi_0462 at 505.674 kb on + strand, within Echvi_0462 at 505.674 kb on + strand, within Echvi_0462 at 505.674 kb on + strand, within Echvi_0462 at 505.674 kb on + strand, within Echvi_0462 at 505.674 kb on + strand, within Echvi_0462 at 505.674 kb on + strand, within Echvi_0462 at 505.674 kb on + strand, within Echvi_0462 at 505.674 kb on + strand, within Echvi_0462 at 505.675 kb on - strand, within Echvi_0462 at 505.675 kb on - strand, within Echvi_0462 at 505.677 kb on - strand, within Echvi_0462 at 505.681 kb on + strand, within Echvi_0462 at 505.681 kb on + strand, within Echvi_0462 at 505.681 kb on + strand, within Echvi_0462 at 505.681 kb on + strand, within Echvi_0462 at 505.681 kb on + strand, within Echvi_0462 at 505.681 kb on + strand, within Echvi_0462 at 505.681 kb on + strand, within Echvi_0462 at 505.681 kb on + strand, within Echvi_0462 at 505.681 kb on + strand, within Echvi_0462 at 505.682 kb on - strand, within Echvi_0462 at 505.682 kb on - strand, within Echvi_0462 at 505.682 kb on - strand, within Echvi_0462 at 505.684 kb on - strand, within Echvi_0462 at 505.720 kb on + strand, within Echvi_0462 at 505.720 kb on + strand, within Echvi_0462 at 505.721 kb on - strand, within Echvi_0462 at 505.732 kb on + strand, within Echvi_0462 at 505.741 kb on - strand, within Echvi_0462 at 505.780 kb on + strand, within Echvi_0462 at 505.782 kb on + strand, within Echvi_0462 at 505.783 kb on - strand, within Echvi_0462 at 505.794 kb on + strand, within Echvi_0462 at 505.794 kb on + strand, within Echvi_0462 at 505.794 kb on + strand, within Echvi_0462 at 505.803 kb on + strand, within Echvi_0462 at 505.804 kb on - strand, within Echvi_0462 at 505.844 kb on + strand at 505.844 kb on + strand at 505.845 kb on - strand at 505.888 kb on - strand at 505.891 kb on + strand at 505.891 kb on + strand at 505.891 kb on + strand at 505.903 kb on - strand at 505.942 kb on + strand at 505.943 kb on - strand at 505.945 kb on - strand at 505.957 kb on + strand at 505.987 kb on + strand at 505.988 kb on - strand at 505.995 kb on - strand at 506.007 kb on - strand at 506.032 kb on + strand at 506.032 kb on + strand at 506.046 kb on - strand at 506.075 kb on + strand at 506.075 kb on + strand at 506.075 kb on + strand at 506.076 kb on - strand at 506.076 kb on - strand at 506.076 kb on - strand at 506.076 kb on - strand at 506.079 kb on + strand at 506.079 kb on + strand at 506.079 kb on + strand at 506.079 kb on + strand at 506.079 kb on + strand at 506.080 kb on - strand at 506.084 kb on + strand at 506.085 kb on - strand at 506.107 kb on + strand at 506.113 kb on + strand at 506.120 kb on - strand at 506.120 kb on - strand at 506.131 kb on + strand at 506.132 kb on - strand at 506.136 kb on - strand at 506.176 kb on + strand at 506.176 kb on + strand at 506.176 kb on + strand at 506.176 kb on + strand at 506.176 kb on + strand at 506.176 kb on + strand at 506.177 kb on - strand at 506.177 kb on - strand at 506.177 kb on - strand at 506.181 kb on + strand at 506.181 kb on + strand at 506.182 kb on - strand at 506.182 kb on - strand at 506.186 kb on + strand at 506.199 kb on - strand at 506.201 kb on - strand at 506.338 kb on + strand at 506.339 kb on - strand at 506.352 kb on + strand, within Echvi_0463 at 506.355 kb on + strand, within Echvi_0463 at 506.355 kb on + strand, within Echvi_0463 at 506.355 kb on + strand, within Echvi_0463 at 506.355 kb on + strand, within Echvi_0463 at 506.356 kb on - strand, within Echvi_0463 at 506.356 kb on - strand, within Echvi_0463 at 506.356 kb on - strand, within Echvi_0463 at 506.357 kb on + strand, within Echvi_0463 at 506.357 kb on + strand, within Echvi_0463 at 506.357 kb on + strand, within Echvi_0463 at 506.357 kb on + strand, within Echvi_0463 at 506.358 kb on - strand, within Echvi_0463 at 506.435 kb on + strand, within Echvi_0463 at 506.442 kb on - strand, within Echvi_0463 at 506.442 kb on - strand, within Echvi_0463 at 506.442 kb on - strand, within Echvi_0463 at 506.442 kb on - strand, within Echvi_0463 at 506.442 kb on - strand, within Echvi_0463 at 506.443 kb on + strand, within Echvi_0463 at 506.444 kb on - strand, within Echvi_0463 at 506.508 kb on - strand, within Echvi_0463 at 506.523 kb on + strand, within Echvi_0463 at 506.579 kb on + strand, within Echvi_0463 at 506.589 kb on + strand, within Echvi_0463 at 506.590 kb on - strand, within Echvi_0463 at 506.593 kb on - strand, within Echvi_0463 at 506.693 kb on + strand, within Echvi_0463 at 506.736 kb on - strand, within Echvi_0463 at 506.740 kb on + strand, within Echvi_0463 at 506.741 kb on - strand, within Echvi_0463 at 506.741 kb on - strand, within Echvi_0463 at 506.741 kb on - strand, within Echvi_0463 at 506.749 kb on - strand, within Echvi_0463 at 506.768 kb on - strand, within Echvi_0463 at 506.800 kb on + strand, within Echvi_0463 at 506.800 kb on + strand, within Echvi_0463 at 506.801 kb on - strand, within Echvi_0463 at 506.829 kb on + strand, within Echvi_0463 at 506.830 kb on - strand, within Echvi_0463 at 506.843 kb on - strand, within Echvi_0463
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose 20mM (C) remove 505,012 + +0.4 505,012 + +1.0 505,034 + +1.4 505,034 + -1.9 505,035 - -1.6 505,039 + -1.9 505,040 - +0.1 505,040 - -0.9 505,203 + +0.4 505,246 - +0.8 505,255 + +0.2 505,256 - -0.5 505,285 + +1.4 505,285 + +0.5 505,285 + +0.6 505,285 + -2.2 505,286 - +0.1 505,286 - +1.1 505,300 + +0.4 505,306 - -2.0 505,306 - +3.2 505,306 - +0.8 505,307 + +1.5 505,308 - +0.3 505,308 - +0.3 505,310 + -0.5 505,311 - -1.4 505,318 + -0.5 505,318 + -2.3 505,318 + +0.0 505,318 + -1.2 505,318 + -0.7 505,318 + -0.9 505,319 - -0.3 505,319 - -2.4 505,319 - +1.1 505,319 - -0.1 505,319 - +0.2 505,358 - +0.8 505,358 - -1.2 505,360 + +0.1 505,361 - -0.4 505,362 + +0.3 505,385 - -1.5 505,433 + +0.5 505,434 - +0.2 505,434 - -0.8 505,443 + -0.5 505,444 - +5.6 505,446 - +0.7 505,449 + +0.0 505,450 - -0.3 505,452 + -1.6 505,494 - -2.1 505,495 + -1.4 505,495 + -1.3 505,496 - +0.1 505,508 + +0.4 505,509 - +0.3 505,517 + +1.4 505,559 + +0.5 505,559 + -0.1 505,559 + +1.1 505,560 - -0.9 505,583 - +3.0 505,583 - +1.0 505,674 + Echvi_0462 0.26 +1.5 505,674 + Echvi_0462 0.26 -3.2 505,674 + Echvi_0462 0.26 -3.3 505,674 + Echvi_0462 0.26 -0.2 505,674 + Echvi_0462 0.26 -0.2 505,674 + Echvi_0462 0.26 +0.5 505,674 + Echvi_0462 0.26 -0.4 505,674 + Echvi_0462 0.26 +0.7 505,674 + Echvi_0462 0.26 -1.2 505,674 + Echvi_0462 0.26 -2.3 505,675 - Echvi_0462 0.27 -0.7 505,675 - Echvi_0462 0.27 +1.5 505,677 - Echvi_0462 0.28 -0.8 505,681 + Echvi_0462 0.29 +1.3 505,681 + Echvi_0462 0.29 -0.3 505,681 + Echvi_0462 0.29 -0.5 505,681 + Echvi_0462 0.29 -0.1 505,681 + Echvi_0462 0.29 +2.8 505,681 + Echvi_0462 0.29 -0.7 505,681 + Echvi_0462 0.29 -0.6 505,681 + Echvi_0462 0.29 -0.1 505,681 + Echvi_0462 0.29 +0.3 505,682 - Echvi_0462 0.29 +0.9 505,682 - Echvi_0462 0.29 -0.7 505,682 - Echvi_0462 0.29 -0.7 505,684 - Echvi_0462 0.30 -1.2 505,720 + Echvi_0462 0.44 -1.4 505,720 + Echvi_0462 0.44 -0.5 505,721 - Echvi_0462 0.45 +0.5 505,732 + Echvi_0462 0.49 -2.5 505,741 - Echvi_0462 0.52 +3.3 505,780 + Echvi_0462 0.67 +1.8 505,782 + Echvi_0462 0.68 -2.3 505,783 - Echvi_0462 0.69 -0.7 505,794 + Echvi_0462 0.73 +0.3 505,794 + Echvi_0462 0.73 +1.0 505,794 + Echvi_0462 0.73 +0.3 505,803 + Echvi_0462 0.76 -1.9 505,804 - Echvi_0462 0.77 +0.7 505,844 + +0.3 505,844 + +0.7 505,845 - +1.2 505,888 - -3.0 505,891 + +2.0 505,891 + +1.2 505,891 + +0.1 505,903 - +0.3 505,942 + -0.1 505,943 - +0.2 505,945 - +0.4 505,957 + -0.1 505,987 + -0.5 505,988 - +1.0 505,995 - +0.2 506,007 - -0.4 506,032 + -0.1 506,032 + +0.5 506,046 - -0.5 506,075 + -1.2 506,075 + -0.9 506,075 + -1.5 506,076 - +1.3 506,076 - -1.9 506,076 - -0.9 506,076 - +0.3 506,079 + +3.0 506,079 + +0.5 506,079 + -0.4 506,079 + +0.2 506,079 + +0.6 506,080 - +1.2 506,084 + +0.2 506,085 - -0.6 506,107 + +1.5 506,113 + +0.5 506,120 - +2.0 506,120 - +0.7 506,131 + -1.4 506,132 - -2.0 506,136 - +0.4 506,176 + +0.9 506,176 + -2.8 506,176 + -0.0 506,176 + -0.1 506,176 + +0.0 506,176 + +0.1 506,177 - -0.0 506,177 - +0.7 506,177 - -0.3 506,181 + -0.1 506,181 + -0.2 506,182 - +0.0 506,182 - -0.5 506,186 + +0.9 506,199 - -0.3 506,201 - -0.9 506,338 + -2.0 506,339 - +0.8 506,352 + Echvi_0463 0.10 +1.5 506,355 + Echvi_0463 0.10 +1.0 506,355 + Echvi_0463 0.10 -0.5 506,355 + Echvi_0463 0.10 -2.9 506,355 + Echvi_0463 0.10 -1.7 506,356 - Echvi_0463 0.10 +0.0 506,356 - Echvi_0463 0.10 -0.9 506,356 - Echvi_0463 0.10 +0.6 506,357 + Echvi_0463 0.10 +1.2 506,357 + Echvi_0463 0.10 -3.5 506,357 + Echvi_0463 0.10 +1.1 506,357 + Echvi_0463 0.10 -0.1 506,358 - Echvi_0463 0.10 +0.5 506,435 + Echvi_0463 0.13 -2.9 506,442 - Echvi_0463 0.14 -0.2 506,442 - Echvi_0463 0.14 -0.0 506,442 - Echvi_0463 0.14 +2.0 506,442 - Echvi_0463 0.14 +1.5 506,442 - Echvi_0463 0.14 -0.6 506,443 + Echvi_0463 0.14 -0.6 506,444 - Echvi_0463 0.14 +0.9 506,508 - Echvi_0463 0.16 +1.2 506,523 + Echvi_0463 0.17 -1.0 506,579 + Echvi_0463 0.19 +1.8 506,589 + Echvi_0463 0.19 -2.1 506,590 - Echvi_0463 0.19 +0.4 506,593 - Echvi_0463 0.20 -1.1 506,693 + Echvi_0463 0.23 +3.5 506,736 - Echvi_0463 0.25 +0.1 506,740 + Echvi_0463 0.25 -0.4 506,741 - Echvi_0463 0.25 -0.3 506,741 - Echvi_0463 0.25 -2.6 506,741 - Echvi_0463 0.25 -0.3 506,749 - Echvi_0463 0.26 -1.1 506,768 - Echvi_0463 0.26 +1.7 506,800 + Echvi_0463 0.28 -0.7 506,800 + Echvi_0463 0.28 -0.9 506,801 - Echvi_0463 0.28 +0.5 506,829 + Echvi_0463 0.29 +0.2 506,830 - Echvi_0463 0.29 +1.5 506,843 - Echvi_0463 0.29 +0.7
Or see this region's nucleotide sequence