Experiment: D-Trehalose 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0353 and Echvi_0354 are separated by 411 nucleotides Echvi_0354 and Echvi_0355 are separated by 4 nucleotides Echvi_0355 and Echvi_0356 are separated by 102 nucleotides
Echvi_0353: Echvi_0353 - hypothetical protein, at 379,783 to 380,916
_0353
Echvi_0354: Echvi_0354 - Predicted transcriptional regulators, at 381,328 to 381,657
_0354
Echvi_0355: Echvi_0355 - Putative stress-responsive transcriptional regulator, at 381,662 to 383,569
_0355
Echvi_0356: Echvi_0356 - Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain, at 383,672 to 385,072
_0356
Position (kb) 381
382
383
384 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 380.684 kb on + strand, within Echvi_0353 at 380.688 kb on + strand, within Echvi_0353 at 380.688 kb on + strand, within Echvi_0353 at 380.688 kb on + strand, within Echvi_0353 at 380.688 kb on + strand, within Echvi_0353 at 380.688 kb on + strand, within Echvi_0353 at 380.688 kb on + strand, within Echvi_0353 at 380.689 kb on - strand, within Echvi_0353 at 380.689 kb on - strand, within Echvi_0353 at 380.689 kb on - strand, within Echvi_0353 at 380.752 kb on + strand, within Echvi_0353 at 380.802 kb on + strand, within Echvi_0353 at 380.803 kb on - strand at 380.816 kb on + strand at 380.842 kb on + strand at 380.842 kb on + strand at 380.843 kb on - strand at 380.843 kb on - strand at 380.848 kb on + strand at 380.849 kb on - strand at 380.849 kb on - strand at 380.879 kb on - strand at 380.889 kb on + strand at 380.969 kb on + strand at 381.047 kb on - strand at 381.048 kb on + strand at 381.048 kb on + strand at 381.048 kb on + strand at 381.048 kb on + strand at 381.048 kb on + strand at 381.049 kb on - strand at 381.049 kb on - strand at 381.049 kb on - strand at 381.049 kb on - strand at 381.049 kb on - strand at 381.136 kb on - strand at 381.136 kb on - strand at 381.190 kb on - strand at 381.236 kb on + strand at 381.237 kb on - strand at 381.237 kb on - strand at 381.237 kb on - strand at 381.284 kb on - strand at 381.284 kb on - strand at 381.284 kb on - strand at 381.284 kb on - strand at 381.307 kb on + strand at 381.308 kb on - strand at 381.312 kb on + strand at 381.312 kb on + strand at 381.350 kb on + strand at 381.350 kb on + strand at 381.351 kb on - strand at 381.410 kb on + strand, within Echvi_0354 at 381.410 kb on + strand, within Echvi_0354 at 381.410 kb on + strand, within Echvi_0354 at 381.410 kb on + strand, within Echvi_0354 at 381.410 kb on + strand, within Echvi_0354 at 381.410 kb on + strand, within Echvi_0354 at 381.411 kb on - strand, within Echvi_0354 at 381.411 kb on - strand, within Echvi_0354 at 381.411 kb on - strand, within Echvi_0354 at 381.411 kb on - strand, within Echvi_0354 at 381.411 kb on - strand, within Echvi_0354 at 381.411 kb on - strand, within Echvi_0354 at 381.412 kb on + strand at 381.413 kb on - strand, within Echvi_0354 at 381.413 kb on - strand, within Echvi_0354 at 381.453 kb on - strand, within Echvi_0354 at 381.462 kb on - strand, within Echvi_0354 at 381.462 kb on - strand, within Echvi_0354 at 381.475 kb on + strand, within Echvi_0354 at 381.476 kb on - strand, within Echvi_0354 at 381.517 kb on + strand, within Echvi_0354 at 381.517 kb on + strand, within Echvi_0354 at 381.518 kb on - strand, within Echvi_0354 at 381.518 kb on - strand, within Echvi_0354 at 381.559 kb on + strand, within Echvi_0354 at 381.631 kb on - strand at 381.631 kb on - strand at 381.631 kb on - strand at 381.675 kb on + strand at 381.675 kb on + strand at 381.675 kb on + strand at 381.676 kb on - strand at 381.676 kb on - strand at 381.681 kb on + strand at 381.681 kb on + strand at 381.681 kb on + strand at 381.682 kb on - strand at 381.682 kb on - strand at 381.682 kb on - strand at 381.682 kb on - strand at 381.686 kb on - strand at 381.706 kb on + strand at 381.751 kb on + strand at 381.794 kb on - strand at 381.990 kb on - strand, within Echvi_0355 at 381.991 kb on + strand, within Echvi_0355 at 381.992 kb on - strand, within Echvi_0355 at 381.992 kb on - strand, within Echvi_0355 at 381.995 kb on + strand, within Echvi_0355 at 381.995 kb on + strand, within Echvi_0355 at 382.077 kb on + strand, within Echvi_0355 at 382.077 kb on + strand, within Echvi_0355 at 382.078 kb on - strand, within Echvi_0355 at 382.098 kb on - strand, within Echvi_0355 at 382.238 kb on + strand, within Echvi_0355 at 382.239 kb on - strand, within Echvi_0355 at 382.239 kb on - strand, within Echvi_0355 at 382.239 kb on - strand, within Echvi_0355 at 382.240 kb on + strand, within Echvi_0355 at 382.240 kb on + strand, within Echvi_0355 at 382.241 kb on - strand, within Echvi_0355 at 382.241 kb on - strand, within Echvi_0355 at 382.241 kb on - strand, within Echvi_0355 at 382.402 kb on - strand, within Echvi_0355 at 382.519 kb on - strand, within Echvi_0355 at 382.540 kb on + strand, within Echvi_0355 at 382.752 kb on + strand, within Echvi_0355 at 382.761 kb on - strand, within Echvi_0355 at 382.795 kb on + strand, within Echvi_0355 at 382.795 kb on + strand, within Echvi_0355 at 382.796 kb on - strand, within Echvi_0355 at 382.796 kb on - strand, within Echvi_0355 at 382.796 kb on - strand, within Echvi_0355 at 382.796 kb on - strand, within Echvi_0355 at 382.869 kb on + strand, within Echvi_0355 at 382.870 kb on - strand, within Echvi_0355 at 382.966 kb on + strand, within Echvi_0355 at 383.134 kb on - strand, within Echvi_0355 at 383.244 kb on - strand, within Echvi_0355 at 383.351 kb on + strand, within Echvi_0355 at 383.446 kb on + strand at 383.450 kb on + strand at 383.450 kb on + strand at 383.451 kb on - strand at 383.451 kb on - strand at 383.451 kb on - strand at 383.451 kb on - strand at 383.543 kb on - strand at 383.649 kb on + strand at 383.663 kb on + strand at 383.755 kb on - strand at 383.882 kb on + strand, within Echvi_0356 at 384.002 kb on + strand, within Echvi_0356 at 384.051 kb on - strand, within Echvi_0356 at 384.076 kb on - strand, within Echvi_0356 at 384.146 kb on + strand, within Echvi_0356 at 384.146 kb on + strand, within Echvi_0356 at 384.146 kb on + strand, within Echvi_0356 at 384.146 kb on + strand, within Echvi_0356 at 384.147 kb on - strand, within Echvi_0356 at 384.147 kb on - strand, within Echvi_0356 at 384.147 kb on - strand, within Echvi_0356 at 384.148 kb on + strand, within Echvi_0356 at 384.148 kb on + strand, within Echvi_0356 at 384.148 kb on + strand, within Echvi_0356 at 384.149 kb on - strand, within Echvi_0356 at 384.149 kb on - strand, within Echvi_0356 at 384.149 kb on - strand, within Echvi_0356 at 384.149 kb on - strand, within Echvi_0356 at 384.149 kb on - strand, within Echvi_0356 at 384.161 kb on - strand, within Echvi_0356 at 384.247 kb on + strand, within Echvi_0356 at 384.380 kb on + strand, within Echvi_0356 at 384.444 kb on - strand, within Echvi_0356 at 384.444 kb on - strand, within Echvi_0356 at 384.444 kb on - strand, within Echvi_0356 at 384.446 kb on + strand, within Echvi_0356 at 384.447 kb on - strand, within Echvi_0356 at 384.447 kb on - strand, within Echvi_0356 at 384.495 kb on - strand, within Echvi_0356 at 384.495 kb on - strand, within Echvi_0356
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose 20mM (C) remove 380,684 + Echvi_0353 0.79 +0.3 380,688 + Echvi_0353 0.80 +1.7 380,688 + Echvi_0353 0.80 +1.2 380,688 + Echvi_0353 0.80 -1.8 380,688 + Echvi_0353 0.80 +3.2 380,688 + Echvi_0353 0.80 -0.2 380,688 + Echvi_0353 0.80 +1.0 380,689 - Echvi_0353 0.80 -0.3 380,689 - Echvi_0353 0.80 +3.8 380,689 - Echvi_0353 0.80 -0.2 380,752 + Echvi_0353 0.85 -0.2 380,802 + Echvi_0353 0.90 -0.1 380,803 - -0.8 380,816 + +1.1 380,842 + +1.2 380,842 + -0.6 380,843 - -2.4 380,843 - +1.8 380,848 + -0.2 380,849 - -0.1 380,849 - +1.2 380,879 - -0.6 380,889 + -1.0 380,969 + +0.7 381,047 - -1.0 381,048 + -0.6 381,048 + +0.2 381,048 + -0.4 381,048 + -1.6 381,048 + +0.4 381,049 - -0.4 381,049 - +0.6 381,049 - -2.1 381,049 - +0.2 381,049 - +1.3 381,136 - -1.0 381,136 - -1.5 381,190 - +0.1 381,236 + -2.2 381,237 - +0.5 381,237 - -1.0 381,237 - -0.7 381,284 - -2.5 381,284 - -0.4 381,284 - +1.8 381,284 - -0.3 381,307 + -2.3 381,308 - +0.8 381,312 + -0.2 381,312 + +0.1 381,350 + +0.2 381,350 + +1.7 381,351 - -1.8 381,410 + Echvi_0354 0.25 +1.4 381,410 + Echvi_0354 0.25 +0.2 381,410 + Echvi_0354 0.25 +0.7 381,410 + Echvi_0354 0.25 -0.9 381,410 + Echvi_0354 0.25 +1.4 381,410 + Echvi_0354 0.25 -1.6 381,411 - Echvi_0354 0.25 -0.9 381,411 - Echvi_0354 0.25 -0.8 381,411 - Echvi_0354 0.25 +2.4 381,411 - Echvi_0354 0.25 +2.3 381,411 - Echvi_0354 0.25 -1.7 381,411 - Echvi_0354 0.25 +0.6 381,412 + +3.4 381,413 - Echvi_0354 0.26 +2.4 381,413 - Echvi_0354 0.26 -1.6 381,453 - Echvi_0354 0.38 -0.4 381,462 - Echvi_0354 0.41 +1.4 381,462 - Echvi_0354 0.41 +0.7 381,475 + Echvi_0354 0.45 -0.7 381,476 - Echvi_0354 0.45 +0.6 381,517 + Echvi_0354 0.57 -0.4 381,517 + Echvi_0354 0.57 -0.2 381,518 - Echvi_0354 0.58 -1.9 381,518 - Echvi_0354 0.58 +0.2 381,559 + Echvi_0354 0.70 +0.4 381,631 - +2.4 381,631 - +0.8 381,631 - -0.6 381,675 + -2.2 381,675 + +1.4 381,675 + +0.2 381,676 - +0.1 381,676 - -0.6 381,681 + -0.1 381,681 + -0.6 381,681 + -2.2 381,682 - -0.6 381,682 - -1.9 381,682 - -3.0 381,682 - -0.6 381,686 - +3.0 381,706 + +1.2 381,751 + -0.6 381,794 - +0.8 381,990 - Echvi_0355 0.17 -1.5 381,991 + Echvi_0355 0.17 +1.6 381,992 - Echvi_0355 0.17 +0.5 381,992 - Echvi_0355 0.17 -0.2 381,995 + Echvi_0355 0.17 +0.6 381,995 + Echvi_0355 0.17 +2.6 382,077 + Echvi_0355 0.22 +0.4 382,077 + Echvi_0355 0.22 +1.4 382,078 - Echvi_0355 0.22 -2.0 382,098 - Echvi_0355 0.23 +0.4 382,238 + Echvi_0355 0.30 +0.0 382,239 - Echvi_0355 0.30 +0.4 382,239 - Echvi_0355 0.30 -0.9 382,239 - Echvi_0355 0.30 -1.2 382,240 + Echvi_0355 0.30 +0.1 382,240 + Echvi_0355 0.30 +1.3 382,241 - Echvi_0355 0.30 -1.6 382,241 - Echvi_0355 0.30 +1.4 382,241 - Echvi_0355 0.30 +0.2 382,402 - Echvi_0355 0.39 -0.1 382,519 - Echvi_0355 0.45 -0.0 382,540 + Echvi_0355 0.46 -0.7 382,752 + Echvi_0355 0.57 +0.8 382,761 - Echvi_0355 0.58 +0.5 382,795 + Echvi_0355 0.59 +2.4 382,795 + Echvi_0355 0.59 +0.1 382,796 - Echvi_0355 0.59 +0.6 382,796 - Echvi_0355 0.59 +1.0 382,796 - Echvi_0355 0.59 -0.3 382,796 - Echvi_0355 0.59 +1.5 382,869 + Echvi_0355 0.63 -0.2 382,870 - Echvi_0355 0.63 +1.0 382,966 + Echvi_0355 0.68 +2.0 383,134 - Echvi_0355 0.77 -2.1 383,244 - Echvi_0355 0.83 -0.9 383,351 + Echvi_0355 0.89 +1.8 383,446 + +0.3 383,450 + -1.7 383,450 + -0.0 383,451 - -0.9 383,451 - +1.0 383,451 - -2.6 383,451 - -0.7 383,543 - -0.9 383,649 + +0.7 383,663 + -1.7 383,755 - +1.4 383,882 + Echvi_0356 0.15 -0.9 384,002 + Echvi_0356 0.24 -0.3 384,051 - Echvi_0356 0.27 +0.1 384,076 - Echvi_0356 0.29 +0.4 384,146 + Echvi_0356 0.34 -0.6 384,146 + Echvi_0356 0.34 -1.2 384,146 + Echvi_0356 0.34 +0.4 384,146 + Echvi_0356 0.34 +0.9 384,147 - Echvi_0356 0.34 +1.6 384,147 - Echvi_0356 0.34 +0.1 384,147 - Echvi_0356 0.34 -0.6 384,148 + Echvi_0356 0.34 +0.4 384,148 + Echvi_0356 0.34 -2.2 384,148 + Echvi_0356 0.34 -0.8 384,149 - Echvi_0356 0.34 -0.6 384,149 - Echvi_0356 0.34 -0.5 384,149 - Echvi_0356 0.34 -0.4 384,149 - Echvi_0356 0.34 -1.9 384,149 - Echvi_0356 0.34 +3.2 384,161 - Echvi_0356 0.35 -0.9 384,247 + Echvi_0356 0.41 -0.3 384,380 + Echvi_0356 0.51 -0.6 384,444 - Echvi_0356 0.55 +1.6 384,444 - Echvi_0356 0.55 +2.3 384,444 - Echvi_0356 0.55 -0.3 384,446 + Echvi_0356 0.55 -0.6 384,447 - Echvi_0356 0.55 +0.6 384,447 - Echvi_0356 0.55 -1.2 384,495 - Echvi_0356 0.59 +0.8 384,495 - Echvi_0356 0.59 +0.1
Or see this region's nucleotide sequence