Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0350

Experiment: D-Trehalose 20mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0350 and Echvi_0351 are separated by 93 nucleotides Echvi_0350: Echvi_0350 - AhpC/TSA family., at 372,365 to 373,705 _0350 Echvi_0351: Echvi_0351 - Predicted transcription factor, homolog of eukaryotic MBF1, at 373,799 to 374,644 _0351 Position (kb) 372 373 374Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 371.375 kb on - strandat 371.394 kb on + strandat 371.394 kb on + strandat 371.425 kb on + strandat 371.426 kb on - strandat 371.438 kb on + strandat 371.512 kb on - strandat 371.512 kb on - strandat 371.512 kb on - strandat 371.568 kb on + strandat 371.568 kb on + strandat 371.568 kb on + strandat 371.568 kb on + strandat 371.787 kb on + strandat 371.787 kb on + strandat 371.788 kb on - strandat 371.788 kb on - strandat 371.792 kb on + strandat 371.793 kb on - strandat 371.981 kb on + strandat 371.981 kb on + strandat 371.982 kb on - strandat 371.984 kb on - strandat 371.984 kb on - strandat 372.036 kb on + strandat 372.036 kb on + strandat 372.036 kb on + strandat 372.036 kb on + strandat 372.037 kb on - strandat 372.038 kb on + strandat 372.038 kb on + strandat 372.038 kb on + strandat 372.038 kb on + strandat 372.039 kb on - strandat 372.039 kb on - strandat 372.039 kb on - strandat 372.039 kb on - strandat 372.043 kb on + strandat 372.044 kb on - strandat 372.050 kb on + strandat 372.050 kb on + strandat 372.051 kb on - strandat 372.111 kb on + strandat 372.159 kb on - strandat 372.225 kb on + strandat 372.226 kb on - strandat 372.234 kb on + strandat 372.235 kb on - strandat 372.254 kb on - strandat 372.374 kb on + strandat 372.374 kb on + strandat 372.374 kb on + strandat 372.375 kb on - strandat 372.375 kb on - strandat 372.390 kb on + strandat 372.391 kb on - strandat 372.391 kb on - strandat 372.391 kb on - strandat 372.404 kb on + strandat 372.404 kb on + strandat 372.521 kb on - strand, within Echvi_0350at 372.522 kb on + strand, within Echvi_0350at 372.522 kb on + strand, within Echvi_0350at 372.523 kb on - strand, within Echvi_0350at 372.562 kb on + strand, within Echvi_0350at 372.563 kb on - strand, within Echvi_0350at 372.633 kb on - strand, within Echvi_0350at 372.633 kb on - strand, within Echvi_0350at 372.725 kb on - strand, within Echvi_0350at 372.729 kb on + strand, within Echvi_0350at 372.730 kb on - strand, within Echvi_0350at 372.781 kb on + strand, within Echvi_0350at 372.782 kb on - strand, within Echvi_0350at 372.782 kb on - strand, within Echvi_0350at 372.782 kb on - strand, within Echvi_0350at 372.783 kb on + strand, within Echvi_0350at 372.783 kb on + strand, within Echvi_0350at 372.783 kb on + strand, within Echvi_0350at 372.784 kb on - strand, within Echvi_0350at 372.784 kb on - strand, within Echvi_0350at 372.784 kb on - strand, within Echvi_0350at 372.784 kb on - strand, within Echvi_0350at 372.831 kb on + strand, within Echvi_0350at 372.834 kb on + strand, within Echvi_0350at 372.943 kb on - strand, within Echvi_0350at 372.968 kb on + strand, within Echvi_0350at 372.969 kb on - strand, within Echvi_0350at 372.979 kb on + strand, within Echvi_0350at 372.980 kb on - strand, within Echvi_0350at 373.028 kb on + strand, within Echvi_0350at 373.029 kb on - strand, within Echvi_0350at 373.039 kb on + strand, within Echvi_0350at 373.040 kb on - strand, within Echvi_0350at 373.040 kb on - strand, within Echvi_0350at 373.040 kb on - strand, within Echvi_0350at 373.042 kb on - strand, within Echvi_0350at 373.042 kb on - strand, within Echvi_0350at 373.060 kb on + strand, within Echvi_0350at 373.060 kb on + strand, within Echvi_0350at 373.062 kb on + strand, within Echvi_0350at 373.063 kb on - strand, within Echvi_0350at 373.063 kb on - strand, within Echvi_0350at 373.063 kb on - strand, within Echvi_0350at 373.279 kb on + strand, within Echvi_0350at 373.279 kb on + strand, within Echvi_0350at 373.279 kb on + strand, within Echvi_0350at 373.279 kb on + strand, within Echvi_0350at 373.281 kb on + strand, within Echvi_0350at 373.281 kb on + strand, within Echvi_0350at 373.282 kb on - strand, within Echvi_0350at 373.375 kb on + strand, within Echvi_0350at 373.376 kb on - strand, within Echvi_0350at 373.376 kb on - strand, within Echvi_0350at 373.378 kb on - strand, within Echvi_0350at 373.398 kb on + strand, within Echvi_0350at 373.399 kb on - strand, within Echvi_0350at 373.399 kb on - strand, within Echvi_0350at 373.445 kb on - strand, within Echvi_0350at 373.479 kb on + strand, within Echvi_0350at 373.479 kb on + strandat 373.480 kb on - strand, within Echvi_0350at 373.490 kb on + strand, within Echvi_0350at 373.491 kb on - strand, within Echvi_0350at 373.542 kb on + strand, within Echvi_0350at 373.543 kb on - strand, within Echvi_0350at 373.611 kb on - strandat 373.727 kb on + strandat 373.736 kb on - strandat 373.736 kb on - strandat 373.738 kb on + strandat 373.745 kb on + strandat 373.745 kb on + strandat 373.797 kb on + strandat 373.797 kb on + strandat 373.798 kb on - strandat 373.801 kb on - strandat 373.965 kb on - strand, within Echvi_0351at 373.984 kb on - strand, within Echvi_0351at 374.066 kb on + strand, within Echvi_0351at 374.109 kb on + strand, within Echvi_0351at 374.110 kb on - strand, within Echvi_0351at 374.226 kb on + strand, within Echvi_0351at 374.227 kb on - strand, within Echvi_0351at 374.263 kb on - strand, within Echvi_0351at 374.342 kb on + strand, within Echvi_0351at 374.366 kb on + strand, within Echvi_0351at 374.367 kb on - strand, within Echvi_0351at 374.403 kb on - strand, within Echvi_0351at 374.534 kb on - strand, within Echvi_0351at 374.627 kb on + strandat 374.669 kb on - strandat 374.669 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose 20mM (C)
remove
371,375 - -0.6
371,394 + +1.7
371,394 + -1.0
371,425 + -0.9
371,426 - -0.4
371,438 + -0.6
371,512 - -2.1
371,512 - -0.2
371,512 - -0.9
371,568 + -0.7
371,568 + -0.3
371,568 + +0.7
371,568 + +1.1
371,787 + -0.0
371,787 + +1.1
371,788 - -0.1
371,788 - +0.6
371,792 + -1.2
371,793 - -1.0
371,981 + -0.4
371,981 + -0.8
371,982 - -0.7
371,984 - -0.3
371,984 - +1.6
372,036 + +0.2
372,036 + -1.3
372,036 + +1.2
372,036 + +1.4
372,037 - +0.6
372,038 + +0.2
372,038 + +1.1
372,038 + +0.1
372,038 + +0.4
372,039 - -1.5
372,039 - -2.3
372,039 - +0.6
372,039 - -1.8
372,043 + +0.4
372,044 - +0.1
372,050 + -2.4
372,050 + +1.2
372,051 - -0.2
372,111 + +2.0
372,159 - +3.8
372,225 + +0.4
372,226 - -1.4
372,234 + -1.2
372,235 - +0.6
372,254 - -0.4
372,374 + +0.2
372,374 + +0.1
372,374 + -0.9
372,375 - +0.8
372,375 - -1.7
372,390 + -1.6
372,391 - +1.8
372,391 - -2.0
372,391 - -0.2
372,404 + -1.5
372,404 + -0.2
372,521 - Echvi_0350 0.12 -0.4
372,522 + Echvi_0350 0.12 +1.4
372,522 + Echvi_0350 0.12 -0.2
372,523 - Echvi_0350 0.12 +1.3
372,562 + Echvi_0350 0.15 -0.2
372,563 - Echvi_0350 0.15 -0.6
372,633 - Echvi_0350 0.20 +0.8
372,633 - Echvi_0350 0.20 +0.5
372,725 - Echvi_0350 0.27 +0.6
372,729 + Echvi_0350 0.27 -1.0
372,730 - Echvi_0350 0.27 -0.1
372,781 + Echvi_0350 0.31 -0.2
372,782 - Echvi_0350 0.31 +0.3
372,782 - Echvi_0350 0.31 -1.2
372,782 - Echvi_0350 0.31 +0.3
372,783 + Echvi_0350 0.31 +0.4
372,783 + Echvi_0350 0.31 +0.4
372,783 + Echvi_0350 0.31 -0.7
372,784 - Echvi_0350 0.31 +0.7
372,784 - Echvi_0350 0.31 +0.6
372,784 - Echvi_0350 0.31 +1.2
372,784 - Echvi_0350 0.31 -0.4
372,831 + Echvi_0350 0.35 +0.3
372,834 + Echvi_0350 0.35 -0.2
372,943 - Echvi_0350 0.43 -0.9
372,968 + Echvi_0350 0.45 -0.7
372,969 - Echvi_0350 0.45 -0.2
372,979 + Echvi_0350 0.46 +1.1
372,980 - Echvi_0350 0.46 -0.3
373,028 + Echvi_0350 0.49 -0.6
373,029 - Echvi_0350 0.50 -0.2
373,039 + Echvi_0350 0.50 +0.4
373,040 - Echvi_0350 0.50 -0.0
373,040 - Echvi_0350 0.50 +0.5
373,040 - Echvi_0350 0.50 +0.1
373,042 - Echvi_0350 0.50 -1.8
373,042 - Echvi_0350 0.50 +1.4
373,060 + Echvi_0350 0.52 +1.1
373,060 + Echvi_0350 0.52 -0.7
373,062 + Echvi_0350 0.52 -1.7
373,063 - Echvi_0350 0.52 +0.5
373,063 - Echvi_0350 0.52 +1.4
373,063 - Echvi_0350 0.52 +0.0
373,279 + Echvi_0350 0.68 +2.4
373,279 + Echvi_0350 0.68 -1.1
373,279 + Echvi_0350 0.68 -0.4
373,279 + Echvi_0350 0.68 -0.6
373,281 + Echvi_0350 0.68 +0.6
373,281 + Echvi_0350 0.68 -0.6
373,282 - Echvi_0350 0.68 +1.4
373,375 + Echvi_0350 0.75 +1.6
373,376 - Echvi_0350 0.75 +0.3
373,376 - Echvi_0350 0.75 +0.6
373,378 - Echvi_0350 0.76 +1.4
373,398 + Echvi_0350 0.77 +0.3
373,399 - Echvi_0350 0.77 +0.5
373,399 - Echvi_0350 0.77 +0.0
373,445 - Echvi_0350 0.81 +1.1
373,479 + Echvi_0350 0.83 -0.9
373,479 + -0.6
373,480 - Echvi_0350 0.83 +0.9
373,490 + Echvi_0350 0.84 +0.4
373,491 - Echvi_0350 0.84 +0.0
373,542 + Echvi_0350 0.88 +2.0
373,543 - Echvi_0350 0.88 +0.8
373,611 - +1.6
373,727 + +0.1
373,736 - +1.3
373,736 - +0.2
373,738 + -0.7
373,745 + +2.2
373,745 + +1.2
373,797 + +1.9
373,797 + -2.0
373,798 - +0.6
373,801 - +0.4
373,965 - Echvi_0351 0.20 +0.8
373,984 - Echvi_0351 0.22 -1.1
374,066 + Echvi_0351 0.32 +0.8
374,109 + Echvi_0351 0.37 +0.7
374,110 - Echvi_0351 0.37 +0.2
374,226 + Echvi_0351 0.50 -0.2
374,227 - Echvi_0351 0.51 +2.0
374,263 - Echvi_0351 0.55 -1.0
374,342 + Echvi_0351 0.64 +0.4
374,366 + Echvi_0351 0.67 -1.6
374,367 - Echvi_0351 0.67 -0.7
374,403 - Echvi_0351 0.71 -0.7
374,534 - Echvi_0351 0.87 -0.1
374,627 + +1.5
374,669 - -1.0
374,669 - -1.6

Or see this region's nucleotide sequence