Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0302

Experiment: D-Trehalose 20mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0300 and Echvi_0301 are separated by 1 nucleotidesEchvi_0301 and Echvi_0302 are separated by 86 nucleotidesEchvi_0302 and Echvi_0303 are separated by 110 nucleotidesEchvi_0303 and Echvi_0304 are separated by 144 nucleotides Echvi_0300: Echvi_0300 - gliding motility-associated ABC transporter ATP-binding subunit GldA, at 311,084 to 312,001 _0300 Echvi_0301: Echvi_0301 - Short-chain dehydrogenases of various substrate specificities, at 312,003 to 312,776 _0301 Echvi_0302: Echvi_0302 - amidohydrolase, at 312,863 to 314,161 _0302 Echvi_0303: Echvi_0303 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 314,272 to 314,940 _0303 Echvi_0304: Echvi_0304 - purine nucleoside phosphorylase I, inosine and guanosine-specific, at 315,085 to 315,933 _0304 Position (kb) 312 313 314 315Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 311.881 kb on + strand, within Echvi_0300at 311.882 kb on - strand, within Echvi_0300at 311.882 kb on - strand, within Echvi_0300at 311.932 kb on + strandat 311.967 kb on + strandat 311.970 kb on + strandat 311.971 kb on - strandat 311.971 kb on - strandat 311.971 kb on - strandat 311.971 kb on - strandat 311.978 kb on + strandat 311.987 kb on + strandat 311.987 kb on + strandat 312.048 kb on + strandat 312.055 kb on + strandat 312.116 kb on + strand, within Echvi_0301at 312.117 kb on - strand, within Echvi_0301at 312.117 kb on - strand, within Echvi_0301at 312.194 kb on + strand, within Echvi_0301at 312.220 kb on + strand, within Echvi_0301at 312.221 kb on - strand, within Echvi_0301at 312.221 kb on - strand, within Echvi_0301at 312.243 kb on + strand, within Echvi_0301at 312.243 kb on + strand, within Echvi_0301at 312.244 kb on - strand, within Echvi_0301at 312.511 kb on + strand, within Echvi_0301at 312.511 kb on + strand, within Echvi_0301at 312.620 kb on + strand, within Echvi_0301at 312.651 kb on + strand, within Echvi_0301at 312.663 kb on + strand, within Echvi_0301at 312.664 kb on - strand, within Echvi_0301at 312.664 kb on - strand, within Echvi_0301at 312.675 kb on + strand, within Echvi_0301at 312.675 kb on + strand, within Echvi_0301at 312.675 kb on + strand, within Echvi_0301at 312.676 kb on - strand, within Echvi_0301at 312.676 kb on - strand, within Echvi_0301at 312.676 kb on - strand, within Echvi_0301at 312.676 kb on - strand, within Echvi_0301at 312.696 kb on + strand, within Echvi_0301at 312.696 kb on + strand, within Echvi_0301at 312.696 kb on + strand, within Echvi_0301at 312.697 kb on - strand, within Echvi_0301at 312.709 kb on - strandat 312.722 kb on + strandat 312.723 kb on - strandat 312.762 kb on + strandat 312.764 kb on + strandat 312.765 kb on - strandat 312.780 kb on - strandat 312.879 kb on + strandat 312.879 kb on + strandat 312.879 kb on + strandat 312.880 kb on - strandat 312.880 kb on - strandat 312.892 kb on + strandat 313.060 kb on - strand, within Echvi_0302at 313.119 kb on + strand, within Echvi_0302at 313.493 kb on - strand, within Echvi_0302at 313.493 kb on - strand, within Echvi_0302at 313.493 kb on - strand, within Echvi_0302at 313.493 kb on - strand, within Echvi_0302at 313.642 kb on + strand, within Echvi_0302at 313.704 kb on + strand, within Echvi_0302at 313.705 kb on - strand, within Echvi_0302at 313.757 kb on + strand, within Echvi_0302at 313.851 kb on + strand, within Echvi_0302at 313.851 kb on + strand, within Echvi_0302at 313.852 kb on - strand, within Echvi_0302at 313.891 kb on + strand, within Echvi_0302at 313.947 kb on - strand, within Echvi_0302at 313.982 kb on + strand, within Echvi_0302at 314.141 kb on + strandat 314.141 kb on + strandat 314.159 kb on + strandat 314.171 kb on + strandat 314.242 kb on + strandat 314.242 kb on + strandat 314.243 kb on - strandat 314.244 kb on + strandat 314.245 kb on - strandat 314.245 kb on - strandat 314.245 kb on - strandat 314.248 kb on + strandat 314.273 kb on + strandat 314.287 kb on + strandat 314.287 kb on + strandat 314.364 kb on - strand, within Echvi_0303at 314.508 kb on + strand, within Echvi_0303at 314.508 kb on + strand, within Echvi_0303at 314.509 kb on - strand, within Echvi_0303at 314.509 kb on - strand, within Echvi_0303at 314.565 kb on + strand, within Echvi_0303at 314.566 kb on - strand, within Echvi_0303at 314.589 kb on + strand, within Echvi_0303at 314.743 kb on - strand, within Echvi_0303at 314.743 kb on - strand, within Echvi_0303at 314.781 kb on + strand, within Echvi_0303at 314.782 kb on - strand, within Echvi_0303at 314.847 kb on + strand, within Echvi_0303at 314.878 kb on - strandat 314.945 kb on + strandat 314.945 kb on + strandat 314.945 kb on + strandat 314.946 kb on - strandat 314.946 kb on - strandat 315.022 kb on + strandat 315.023 kb on - strandat 315.031 kb on - strandat 315.120 kb on + strandat 315.121 kb on - strandat 315.124 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose 20mM (C)
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311,881 + Echvi_0300 0.87 +0.5
311,882 - Echvi_0300 0.87 +1.3
311,882 - Echvi_0300 0.87 -0.3
311,932 + +0.7
311,967 + +0.1
311,970 + +0.1
311,971 - +0.4
311,971 - -0.3
311,971 - +0.8
311,971 - +0.6
311,978 + -0.4
311,987 + +0.9
311,987 + +0.5
312,048 + -0.4
312,055 + +0.6
312,116 + Echvi_0301 0.15 -2.8
312,117 - Echvi_0301 0.15 +0.3
312,117 - Echvi_0301 0.15 +0.4
312,194 + Echvi_0301 0.25 +0.2
312,220 + Echvi_0301 0.28 -0.8
312,221 - Echvi_0301 0.28 +1.4
312,221 - Echvi_0301 0.28 +0.9
312,243 + Echvi_0301 0.31 -0.7
312,243 + Echvi_0301 0.31 +0.0
312,244 - Echvi_0301 0.31 +0.4
312,511 + Echvi_0301 0.66 +0.0
312,511 + Echvi_0301 0.66 +1.2
312,620 + Echvi_0301 0.80 +0.1
312,651 + Echvi_0301 0.84 +0.1
312,663 + Echvi_0301 0.85 -1.1
312,664 - Echvi_0301 0.85 -1.4
312,664 - Echvi_0301 0.85 -0.9
312,675 + Echvi_0301 0.87 +0.7
312,675 + Echvi_0301 0.87 -0.4
312,675 + Echvi_0301 0.87 -1.0
312,676 - Echvi_0301 0.87 +1.6
312,676 - Echvi_0301 0.87 -0.1
312,676 - Echvi_0301 0.87 +0.4
312,676 - Echvi_0301 0.87 -1.0
312,696 + Echvi_0301 0.90 -0.8
312,696 + Echvi_0301 0.90 +0.4
312,696 + Echvi_0301 0.90 -1.2
312,697 - Echvi_0301 0.90 +0.9
312,709 - -0.5
312,722 + +1.4
312,723 - +1.0
312,762 + -1.6
312,764 + -0.1
312,765 - +0.4
312,780 - +1.2
312,879 + -0.5
312,879 + -1.6
312,879 + +0.1
312,880 - +0.9
312,880 - +0.1
312,892 + -2.5
313,060 - Echvi_0302 0.15 -0.0
313,119 + Echvi_0302 0.20 +1.4
313,493 - Echvi_0302 0.48 -0.9
313,493 - Echvi_0302 0.48 +0.7
313,493 - Echvi_0302 0.48 +0.7
313,493 - Echvi_0302 0.48 +0.7
313,642 + Echvi_0302 0.60 +1.8
313,704 + Echvi_0302 0.65 -0.2
313,705 - Echvi_0302 0.65 +0.9
313,757 + Echvi_0302 0.69 +0.1
313,851 + Echvi_0302 0.76 +1.3
313,851 + Echvi_0302 0.76 +0.6
313,852 - Echvi_0302 0.76 +0.6
313,891 + Echvi_0302 0.79 +1.7
313,947 - Echvi_0302 0.83 -0.6
313,982 + Echvi_0302 0.86 -0.3
314,141 + -2.7
314,141 + -0.2
314,159 + -1.8
314,171 + +0.6
314,242 + -0.7
314,242 + -1.7
314,243 - +0.4
314,244 + +0.2
314,245 - -2.5
314,245 - -2.4
314,245 - -1.3
314,248 + -0.8
314,273 + -0.2
314,287 + -3.2
314,287 + -1.1
314,364 - Echvi_0303 0.14 +0.0
314,508 + Echvi_0303 0.35 +0.4
314,508 + Echvi_0303 0.35 -2.4
314,509 - Echvi_0303 0.35 +0.6
314,509 - Echvi_0303 0.35 +3.1
314,565 + Echvi_0303 0.44 +0.5
314,566 - Echvi_0303 0.44 +1.8
314,589 + Echvi_0303 0.47 +0.1
314,743 - Echvi_0303 0.70 -0.4
314,743 - Echvi_0303 0.70 -0.6
314,781 + Echvi_0303 0.76 -0.9
314,782 - Echvi_0303 0.76 -0.0
314,847 + Echvi_0303 0.86 +0.1
314,878 - +0.6
314,945 + -1.2
314,945 + -0.4
314,945 + -0.5
314,946 - -0.9
314,946 - +1.0
315,022 + -0.0
315,023 - -0.3
315,031 - +1.3
315,120 + -1.6
315,121 - +2.2
315,124 - -0.3

Or see this region's nucleotide sequence