Experiment: D-Trehalose 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0196 and Echvi_0197 are separated by 13 nucleotides Echvi_0197 and Echvi_0198 are separated by 56 nucleotides
Echvi_0196: Echvi_0196 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 212,305 to 213,462
_0196
Echvi_0197: Echvi_0197 - hypothetical protein, at 213,476 to 213,595
_0197
Echvi_0198: Echvi_0198 - Coenzyme F390 synthetase, at 213,652 to 214,656
_0198
Position (kb) 213
214 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 212.507 kb on - strand, within Echvi_0196 at 212.630 kb on + strand, within Echvi_0196 at 212.740 kb on - strand, within Echvi_0196 at 212.800 kb on - strand, within Echvi_0196 at 212.877 kb on + strand, within Echvi_0196 at 212.878 kb on - strand, within Echvi_0196 at 213.056 kb on + strand, within Echvi_0196 at 213.299 kb on - strand, within Echvi_0196 at 213.299 kb on - strand, within Echvi_0196 at 213.406 kb on - strand at 213.485 kb on + strand at 213.485 kb on + strand at 213.513 kb on + strand, within Echvi_0197 at 213.574 kb on + strand, within Echvi_0197 at 213.577 kb on + strand, within Echvi_0197 at 213.599 kb on - strand at 213.630 kb on + strand at 213.630 kb on + strand at 213.630 kb on + strand at 213.631 kb on - strand at 213.633 kb on + strand at 213.634 kb on - strand at 213.645 kb on + strand at 213.654 kb on - strand at 213.756 kb on + strand, within Echvi_0198 at 213.790 kb on + strand, within Echvi_0198 at 213.795 kb on + strand, within Echvi_0198 at 213.795 kb on + strand, within Echvi_0198 at 213.798 kb on + strand, within Echvi_0198 at 213.879 kb on - strand, within Echvi_0198 at 213.900 kb on - strand, within Echvi_0198 at 214.039 kb on + strand, within Echvi_0198 at 214.175 kb on + strand, within Echvi_0198 at 214.221 kb on + strand, within Echvi_0198 at 214.268 kb on + strand, within Echvi_0198 at 214.313 kb on + strand, within Echvi_0198 at 214.313 kb on + strand, within Echvi_0198 at 214.349 kb on + strand, within Echvi_0198 at 214.405 kb on - strand, within Echvi_0198 at 214.462 kb on - strand, within Echvi_0198 at 214.495 kb on + strand, within Echvi_0198 at 214.547 kb on + strand, within Echvi_0198 at 214.548 kb on - strand, within Echvi_0198 at 214.548 kb on - strand, within Echvi_0198 at 214.554 kb on + strand, within Echvi_0198
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose 20mM (C) remove 212,507 - Echvi_0196 0.17 +1.7 212,630 + Echvi_0196 0.28 -0.2 212,740 - Echvi_0196 0.38 -0.1 212,800 - Echvi_0196 0.43 +0.3 212,877 + Echvi_0196 0.49 -0.5 212,878 - Echvi_0196 0.49 -1.0 213,056 + Echvi_0196 0.65 -0.8 213,299 - Echvi_0196 0.86 +0.4 213,299 - Echvi_0196 0.86 -0.3 213,406 - -0.9 213,485 + +1.4 213,485 + -0.9 213,513 + Echvi_0197 0.31 +0.9 213,574 + Echvi_0197 0.82 -0.0 213,577 + Echvi_0197 0.84 +1.1 213,599 - +1.2 213,630 + +3.2 213,630 + -3.2 213,630 + -0.3 213,631 - +0.1 213,633 + +0.8 213,634 - +1.7 213,645 + +1.2 213,654 - +0.3 213,756 + Echvi_0198 0.10 -0.5 213,790 + Echvi_0198 0.14 -0.4 213,795 + Echvi_0198 0.14 +1.4 213,795 + Echvi_0198 0.14 +2.4 213,798 + Echvi_0198 0.15 +3.0 213,879 - Echvi_0198 0.23 +2.6 213,900 - Echvi_0198 0.25 -0.8 214,039 + Echvi_0198 0.39 +0.5 214,175 + Echvi_0198 0.52 -0.1 214,221 + Echvi_0198 0.57 -0.1 214,268 + Echvi_0198 0.61 -0.9 214,313 + Echvi_0198 0.66 +0.3 214,313 + Echvi_0198 0.66 +0.1 214,349 + Echvi_0198 0.69 +0.4 214,405 - Echvi_0198 0.75 -0.5 214,462 - Echvi_0198 0.81 -0.3 214,495 + Echvi_0198 0.84 -0.9 214,547 + Echvi_0198 0.89 -0.9 214,548 - Echvi_0198 0.89 -0.0 214,548 - Echvi_0198 0.89 +1.0 214,554 + Echvi_0198 0.90 +0.6
Or see this region's nucleotide sequence