Experiment: D-Trehalose 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0179 and Echvi_0180 are separated by 50 nucleotides Echvi_0180 and Echvi_0181 are separated by 154 nucleotides Echvi_0181 and Echvi_0182 are separated by 49 nucleotides
Echvi_0179: Echvi_0179 - Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases, at 197,285 to 197,680
_0179
Echvi_0180: Echvi_0180 - transcription elongation factor GreA, at 197,731 to 198,204
_0180
Echvi_0181: Echvi_0181 - Phosphoglycerate dehydrogenase and related dehydrogenases, at 198,359 to 199,294
_0181
Echvi_0182: Echvi_0182 - Mg2+ transporter (mgtE), at 199,344 to 200,711
_0182
Position (kb) 198
199
200 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 197.426 kb on + strand, within Echvi_0179 at 197.449 kb on + strand, within Echvi_0179 at 197.450 kb on - strand, within Echvi_0179 at 197.539 kb on - strand, within Echvi_0179 at 197.539 kb on - strand, within Echvi_0179 at 197.543 kb on + strand, within Echvi_0179 at 197.544 kb on - strand, within Echvi_0179 at 197.554 kb on + strand, within Echvi_0179 at 197.554 kb on + strand, within Echvi_0179 at 197.555 kb on - strand, within Echvi_0179 at 197.558 kb on + strand, within Echvi_0179 at 197.633 kb on - strand, within Echvi_0179 at 197.633 kb on - strand, within Echvi_0179 at 197.711 kb on - strand at 197.732 kb on + strand at 197.739 kb on + strand at 197.739 kb on + strand at 197.739 kb on + strand at 197.782 kb on + strand, within Echvi_0180 at 197.890 kb on - strand, within Echvi_0180 at 197.914 kb on - strand at 198.060 kb on - strand, within Echvi_0180 at 198.183 kb on + strand at 198.185 kb on + strand at 198.188 kb on + strand at 198.188 kb on + strand at 198.189 kb on - strand at 198.280 kb on + strand at 198.280 kb on + strand at 198.280 kb on + strand at 198.280 kb on + strand at 198.290 kb on - strand at 198.308 kb on + strand at 198.308 kb on + strand at 198.308 kb on + strand at 198.308 kb on + strand at 198.309 kb on - strand at 198.309 kb on - strand at 198.309 kb on - strand at 198.309 kb on - strand at 198.309 kb on - strand at 198.310 kb on + strand at 198.310 kb on + strand at 198.310 kb on + strand at 198.311 kb on - strand at 198.330 kb on + strand at 199.065 kb on - strand, within Echvi_0181 at 199.256 kb on - strand at 199.288 kb on + strand at 199.289 kb on - strand at 199.332 kb on + strand at 199.332 kb on + strand at 199.333 kb on - strand at 199.333 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose 20mM (C) remove 197,426 + Echvi_0179 0.36 +2.0 197,449 + Echvi_0179 0.41 +1.4 197,450 - Echvi_0179 0.42 -0.6 197,539 - Echvi_0179 0.64 -3.5 197,539 - Echvi_0179 0.64 -0.1 197,543 + Echvi_0179 0.65 -0.7 197,544 - Echvi_0179 0.65 -2.7 197,554 + Echvi_0179 0.68 -0.8 197,554 + Echvi_0179 0.68 -0.6 197,555 - Echvi_0179 0.68 -0.0 197,558 + Echvi_0179 0.69 -1.8 197,633 - Echvi_0179 0.88 +0.5 197,633 - Echvi_0179 0.88 +0.6 197,711 - +0.6 197,732 + +0.5 197,739 + +1.4 197,739 + -2.6 197,739 + +1.2 197,782 + Echvi_0180 0.11 +0.3 197,890 - Echvi_0180 0.34 -3.2 197,914 - -1.8 198,060 - Echvi_0180 0.69 -1.9 198,183 + -0.4 198,185 + -2.5 198,188 + -0.7 198,188 + -0.5 198,189 - +4.0 198,280 + -0.4 198,280 + +0.5 198,280 + -2.4 198,280 + -0.6 198,290 - +0.7 198,308 + -3.1 198,308 + -1.0 198,308 + +0.4 198,308 + -0.6 198,309 - -1.0 198,309 - -0.6 198,309 - -1.0 198,309 - -0.9 198,309 - -0.6 198,310 + +0.6 198,310 + -0.6 198,310 + -0.4 198,311 - +2.1 198,330 + -0.8 199,065 - Echvi_0181 0.75 -2.8 199,256 - +1.4 199,288 + -0.6 199,289 - -3.1 199,332 + +0.7 199,332 + -0.8 199,333 - -0.1 199,333 - +0.8
Or see this region's nucleotide sequence