Experiment: KB with Nitrofurantoin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4940 and Psyr_4941 overlap by 4 nucleotides Psyr_4941 and Psyr_4942 are separated by 97 nucleotides Psyr_4942 and Psyr_4943 are separated by 44 nucleotides Psyr_4943 and Psyr_4944 are separated by 149 nucleotides
Psyr_4940: Psyr_4940 - 3'(2'),5'-bisphosphate nucleotidase, at 5,856,355 to 5,857,197
_4940
Psyr_4941: Psyr_4941 - NUDIX hydrolase, at 5,857,194 to 5,857,760
_4941
Psyr_4942: Psyr_4942 - HAD-superfamily hydrolase, subfamily IA, variant 3, at 5,857,858 to 5,858,520
_4942
Psyr_4943: Psyr_4943 - Peptidoglycan-binding LysM:Transport-associated, at 5,858,565 to 5,859,005
_4943
Psyr_4944: Psyr_4944 - transcriptional regulator, LysR family, at 5,859,155 to 5,860,036
_4944
Position (kb) 5857
5858
5859 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5857.240 kb on + strand at 5857.240 kb on + strand at 5857.241 kb on - strand at 5857.405 kb on + strand, within Psyr_4941 at 5857.405 kb on + strand, within Psyr_4941 at 5857.406 kb on - strand, within Psyr_4941 at 5857.565 kb on - strand, within Psyr_4941 at 5857.565 kb on - strand, within Psyr_4941 at 5857.565 kb on - strand, within Psyr_4941 at 5857.655 kb on - strand, within Psyr_4941 at 5857.655 kb on - strand, within Psyr_4941 at 5857.655 kb on - strand, within Psyr_4941 at 5857.715 kb on + strand at 5857.740 kb on + strand at 5857.740 kb on + strand at 5857.740 kb on + strand at 5857.740 kb on + strand at 5857.741 kb on - strand at 5857.741 kb on - strand at 5857.741 kb on - strand at 5857.741 kb on - strand at 5857.741 kb on - strand at 5857.741 kb on - strand at 5857.741 kb on - strand at 5857.746 kb on - strand at 5857.773 kb on + strand at 5857.773 kb on + strand at 5857.773 kb on + strand at 5857.773 kb on + strand at 5857.773 kb on + strand at 5857.774 kb on - strand at 5857.774 kb on - strand at 5857.774 kb on - strand at 5857.774 kb on - strand at 5857.774 kb on - strand at 5857.786 kb on + strand at 5857.786 kb on + strand at 5857.786 kb on + strand at 5857.786 kb on + strand at 5857.786 kb on + strand at 5857.786 kb on + strand at 5857.787 kb on - strand at 5857.787 kb on - strand at 5857.787 kb on - strand at 5857.787 kb on - strand at 5857.789 kb on + strand at 5857.789 kb on + strand at 5857.789 kb on + strand at 5857.789 kb on + strand at 5857.789 kb on + strand at 5857.789 kb on + strand at 5857.789 kb on + strand at 5857.789 kb on + strand at 5857.792 kb on - strand at 5857.792 kb on - strand at 5857.930 kb on + strand, within Psyr_4942 at 5857.930 kb on + strand, within Psyr_4942 at 5858.057 kb on - strand, within Psyr_4942 at 5858.085 kb on + strand, within Psyr_4942 at 5858.086 kb on - strand, within Psyr_4942 at 5858.287 kb on + strand, within Psyr_4942 at 5858.518 kb on + strand at 5858.518 kb on + strand at 5858.518 kb on + strand at 5858.518 kb on + strand at 5858.518 kb on + strand at 5858.519 kb on - strand at 5858.519 kb on - strand at 5858.519 kb on - strand at 5858.519 kb on - strand at 5858.519 kb on - strand at 5858.576 kb on + strand at 5858.669 kb on - strand, within Psyr_4943 at 5858.684 kb on + strand, within Psyr_4943 at 5858.685 kb on - strand, within Psyr_4943 at 5858.720 kb on - strand, within Psyr_4943 at 5858.909 kb on + strand, within Psyr_4943 at 5858.909 kb on + strand, within Psyr_4943 at 5858.909 kb on + strand, within Psyr_4943 at 5858.910 kb on - strand, within Psyr_4943 at 5858.910 kb on - strand, within Psyr_4943 at 5858.910 kb on - strand, within Psyr_4943 at 5858.910 kb on - strand, within Psyr_4943 at 5858.910 kb on - strand, within Psyr_4943 at 5858.996 kb on + strand at 5858.997 kb on - strand at 5859.024 kb on + strand at 5859.024 kb on + strand at 5859.024 kb on + strand at 5859.024 kb on + strand at 5859.025 kb on - strand at 5859.025 kb on - strand at 5859.025 kb on - strand at 5859.050 kb on + strand at 5859.090 kb on + strand at 5859.090 kb on + strand at 5859.090 kb on + strand at 5859.091 kb on - strand at 5859.091 kb on - strand at 5859.091 kb on - strand at 5859.119 kb on + strand at 5859.119 kb on + strand at 5859.119 kb on + strand at 5859.155 kb on - strand at 5859.232 kb on + strand at 5859.232 kb on + strand at 5859.233 kb on - strand at 5859.235 kb on + strand at 5859.345 kb on + strand, within Psyr_4944
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 0.0625 mg/ml remove 5,857,240 + +0.6 5,857,240 + -0.4 5,857,241 - +0.3 5,857,405 + Psyr_4941 0.37 -0.1 5,857,405 + Psyr_4941 0.37 +0.2 5,857,406 - Psyr_4941 0.37 -0.1 5,857,565 - Psyr_4941 0.65 -0.4 5,857,565 - Psyr_4941 0.65 +0.8 5,857,565 - Psyr_4941 0.65 -0.3 5,857,655 - Psyr_4941 0.81 +0.2 5,857,655 - Psyr_4941 0.81 +0.4 5,857,655 - Psyr_4941 0.81 +0.2 5,857,715 + -0.3 5,857,740 + -0.5 5,857,740 + +0.2 5,857,740 + -0.1 5,857,740 + +2.6 5,857,741 - -0.1 5,857,741 - -0.1 5,857,741 - -2.5 5,857,741 - +0.7 5,857,741 - -0.1 5,857,741 - +0.0 5,857,741 - +0.4 5,857,746 - +0.1 5,857,773 + +0.5 5,857,773 + -0.3 5,857,773 + +1.5 5,857,773 + +1.4 5,857,773 + +1.2 5,857,774 - +0.0 5,857,774 - +0.2 5,857,774 - +1.2 5,857,774 - +1.0 5,857,774 - -1.9 5,857,786 + -0.2 5,857,786 + +0.1 5,857,786 + +1.7 5,857,786 + +0.6 5,857,786 + +1.0 5,857,786 + +1.0 5,857,787 - -0.5 5,857,787 - -0.6 5,857,787 - -0.2 5,857,787 - -0.3 5,857,789 + +0.2 5,857,789 + -0.2 5,857,789 + -0.0 5,857,789 + -0.2 5,857,789 + -0.7 5,857,789 + +1.6 5,857,789 + +1.3 5,857,789 + +0.4 5,857,792 - -1.4 5,857,792 - +0.3 5,857,930 + Psyr_4942 0.11 +0.2 5,857,930 + Psyr_4942 0.11 +0.6 5,858,057 - Psyr_4942 0.30 +0.3 5,858,085 + Psyr_4942 0.34 -0.4 5,858,086 - Psyr_4942 0.34 +0.2 5,858,287 + Psyr_4942 0.65 -0.0 5,858,518 + +0.2 5,858,518 + +0.8 5,858,518 + +0.6 5,858,518 + +0.7 5,858,518 + +0.9 5,858,519 - -2.2 5,858,519 - +1.6 5,858,519 - -1.0 5,858,519 - +1.2 5,858,519 - +0.7 5,858,576 + -0.6 5,858,669 - Psyr_4943 0.24 +0.4 5,858,684 + Psyr_4943 0.27 -0.7 5,858,685 - Psyr_4943 0.27 -0.6 5,858,720 - Psyr_4943 0.35 +1.6 5,858,909 + Psyr_4943 0.78 -0.4 5,858,909 + Psyr_4943 0.78 +0.0 5,858,909 + Psyr_4943 0.78 +0.2 5,858,910 - Psyr_4943 0.78 -2.2 5,858,910 - Psyr_4943 0.78 +0.3 5,858,910 - Psyr_4943 0.78 +0.4 5,858,910 - Psyr_4943 0.78 +0.6 5,858,910 - Psyr_4943 0.78 -0.5 5,858,996 + +0.0 5,858,997 - +0.7 5,859,024 + +1.6 5,859,024 + -0.0 5,859,024 + -0.4 5,859,024 + +1.1 5,859,025 - +1.3 5,859,025 - -0.0 5,859,025 - -1.2 5,859,050 + +1.0 5,859,090 + -1.4 5,859,090 + -0.9 5,859,090 + +0.8 5,859,091 - +0.2 5,859,091 - +0.4 5,859,091 - +0.2 5,859,119 + -0.2 5,859,119 + -0.2 5,859,119 + +0.1 5,859,155 - +0.7 5,859,232 + +0.3 5,859,232 + +1.1 5,859,233 - -0.3 5,859,235 + +0.6 5,859,345 + Psyr_4944 0.22 -1.6
Or see this region's nucleotide sequence