Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3943

Experiment: KB with Nitrofurantoin 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nitrofurantoin 0.0625 mg/ml
4,689,594	-		Psyr_3942	0.58	+0.6
4,689,617	+		Psyr_3942	0.59	+0.4
4,689,617	+		Psyr_3942	0.59	-1.4
4,689,617	+		Psyr_3942	0.59	+0.1
4,689,617	+		Psyr_3942	0.59	-1.2
4,689,617	+		Psyr_3942	0.59	-0.7
4,689,617	+		Psyr_3942	0.59	+1.9
4,689,618	-		Psyr_3942	0.59	-2.1
4,689,618	-		Psyr_3942	0.59	+0.3
4,689,619	+		Psyr_3942	0.59	-0.4
4,689,620	-		Psyr_3942	0.59	-0.2
4,689,635	+		Psyr_3942	0.60	-0.7
4,689,635	+		Psyr_3942	0.60	-0.1
4,689,636	-		Psyr_3942	0.60	-0.5
4,689,636	-		Psyr_3942	0.60	+0.3
4,689,636	-		Psyr_3942	0.60	-0.2
4,689,636	-		Psyr_3942	0.60	+0.5
4,689,978	-		Psyr_3942	0.75	+0.7
4,689,988	-		Psyr_3942	0.75	-0.8
4,689,988	-		Psyr_3942	0.75	-0.2
4,690,055	+		Psyr_3942	0.78	+1.0
4,690,056	-		Psyr_3942	0.78	+1.1
4,690,189	+		Psyr_3942	0.83	-0.3
4,690,189	+		Psyr_3942	0.83	-0.2
4,690,460	+				+0.2
4,690,460	+				-0.9
4,690,460	+				+0.1
4,690,498	+				-1.1
4,690,761	+		Psyr_3943	0.28	+0.1
4,690,762	-		Psyr_3943	0.28	-0.3
4,690,762	-		Psyr_3943	0.28	+0.1
4,690,839	+		Psyr_3943	0.39	+0.3
4,690,839	+		Psyr_3943	0.39	+0.3
4,690,839	+		Psyr_3943	0.39	-1.0
4,690,839	+		Psyr_3943	0.39	-0.2
4,690,839	+		Psyr_3943	0.39	+0.8
4,690,840	-		Psyr_3943	0.39	+2.3
4,690,840	-		Psyr_3943	0.39	-0.1
4,690,840	-		Psyr_3943	0.39	+3.0
4,690,840	-		Psyr_3943	0.39	+0.2
4,690,840	-		Psyr_3943	0.39	+2.5
4,690,846	-		Psyr_3943	0.40	-0.7
4,690,846	-		Psyr_3943	0.40	+0.7
4,690,972	-		Psyr_3943	0.59	+0.0
4,690,972	-		Psyr_3943	0.59	+0.3
4,691,036	+		Psyr_3943	0.68	+1.7
4,691,036	+		Psyr_3943	0.68	+0.7
4,691,036	+		Psyr_3943	0.68	-0.7
4,691,036	+		Psyr_3943	0.68	-0.6
4,691,036	+		Psyr_3943	0.68	+0.1
4,691,037	-		Psyr_3943	0.69	+1.0
4,691,037	-		Psyr_3943	0.69	+1.2
4,691,037	-		Psyr_3943	0.69	+1.3
4,691,037	-		Psyr_3943	0.69	+1.5
4,691,037	-		Psyr_3943	0.69	+0.1
4,691,037	-		Psyr_3943	0.69	-0.5
4,691,089	+		Psyr_3943	0.76	-0.6
4,691,171	-		Psyr_3943	0.88	+0.4
4,691,205	-				+1.5
4,691,223	-				+0.9
4,691,233	+				+1.7
4,691,237	+				-1.1
4,691,237	+				+1.1
4,691,237	+				+1.3
4,691,237	+				-2.1
4,691,238	-				-0.7
4,691,238	-				+0.8
4,691,238	-				+0.3
4,691,238	-				+0.4
4,691,278	+				+0.4
4,691,278	+				-0.5
4,691,279	-				-0.3
4,691,287	+				-0.3
4,691,287	+				+1.4
4,691,287	+				+1.7
4,691,287	+				+1.1
4,691,287	+				+0.2
4,691,288	-				+1.7
4,691,288	-				+0.3
4,691,288	-				+0.7
4,691,323	+				-0.5
4,691,323	+				+0.3
4,691,324	-				+0.7
4,691,367	+				-0.2
4,691,367	+				-0.9
4,691,396	+				+0.2
4,691,396	+				+0.5
4,691,396	+				-0.5
4,691,396	+				-0.6
4,691,397	-				+0.4
4,691,397	-				+1.0
4,691,397	-				+0.0
4,691,397	-				-0.0
4,691,397	-				+0.5
4,691,397	-				-0.0
4,691,397	-				+0.6
4,691,547	+				-0.4
4,691,547	+				-0.3
4,691,547	+				-0.4
4,691,548	-				-0.7
4,691,548	-				-0.6
4,691,548	-				+0.2
4,691,548	-				-1.1
4,691,734	-		Psyr_3944	0.13	+0.2
4,691,851	-		Psyr_3944	0.18	-0.1
4,691,858	-		Psyr_3944	0.18	+0.7
4,691,858	-		Psyr_3944	0.18	+0.5
4,691,868	+		Psyr_3944	0.18	-0.7
4,691,964	+		Psyr_3944	0.22	+0.1
4,691,965	-		Psyr_3944	0.22	-1.3
4,691,965	-		Psyr_3944	0.22	-1.8
4,691,985	+		Psyr_3944	0.23	+1.8
4,691,986	-		Psyr_3944	0.23	+1.9
4,691,986	-		Psyr_3944	0.23	+0.5
4,692,068	-		Psyr_3944	0.27	+0.2
4,692,076	+		Psyr_3944	0.27	-0.0
4,692,076	+		Psyr_3944	0.27	-1.1
4,692,077	-		Psyr_3944	0.27	-0.5