Experiment: KB with Nitrofurantoin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1755 and Psyr_1756 are separated by 1 nucleotides Psyr_1756 and Psyr_1757 are separated by 1 nucleotides
Psyr_1755: Psyr_1755 - ABC transporter, at 1,993,795 to 1,995,405
_1755
Psyr_1756: Psyr_1756 - Binding-protein-dependent transport systems inner membrane component, at 1,995,407 to 1,996,426
_1756
Psyr_1757: Psyr_1757 - Binding-protein-dependent transport systems inner membrane component, at 1,996,428 to 1,997,501
_1757
Position (kb) 1995
1996
1997 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1994.492 kb on - strand, within Psyr_1755 at 1994.722 kb on + strand, within Psyr_1755 at 1994.722 kb on + strand, within Psyr_1755 at 1994.734 kb on + strand, within Psyr_1755 at 1994.735 kb on - strand, within Psyr_1755 at 1994.735 kb on - strand, within Psyr_1755 at 1995.408 kb on + strand at 1995.408 kb on + strand at 1995.408 kb on + strand at 1995.408 kb on + strand at 1995.409 kb on - strand at 1995.409 kb on - strand at 1995.409 kb on - strand at 1995.409 kb on - strand at 1995.409 kb on - strand at 1995.409 kb on - strand at 1995.722 kb on + strand, within Psyr_1756 at 1995.723 kb on - strand, within Psyr_1756 at 1995.726 kb on + strand, within Psyr_1756 at 1995.727 kb on - strand, within Psyr_1756 at 1995.727 kb on - strand, within Psyr_1756 at 1995.727 kb on - strand, within Psyr_1756 at 1995.727 kb on - strand, within Psyr_1756 at 1995.830 kb on + strand, within Psyr_1756 at 1995.858 kb on + strand, within Psyr_1756 at 1995.858 kb on + strand, within Psyr_1756 at 1995.858 kb on + strand, within Psyr_1756 at 1995.858 kb on + strand, within Psyr_1756 at 1995.858 kb on + strand, within Psyr_1756 at 1995.859 kb on - strand, within Psyr_1756 at 1995.859 kb on - strand, within Psyr_1756 at 1995.859 kb on - strand, within Psyr_1756 at 1995.859 kb on - strand, within Psyr_1756 at 1995.859 kb on - strand, within Psyr_1756 at 1996.014 kb on + strand, within Psyr_1756 at 1996.014 kb on + strand, within Psyr_1756 at 1996.015 kb on - strand, within Psyr_1756 at 1996.122 kb on + strand, within Psyr_1756 at 1996.122 kb on + strand, within Psyr_1756 at 1996.185 kb on + strand, within Psyr_1756 at 1996.185 kb on + strand, within Psyr_1756 at 1996.197 kb on + strand, within Psyr_1756 at 1996.197 kb on + strand, within Psyr_1756 at 1996.197 kb on + strand, within Psyr_1756 at 1996.198 kb on - strand, within Psyr_1756 at 1996.264 kb on - strand, within Psyr_1756 at 1996.426 kb on + strand at 1996.427 kb on - strand at 1996.474 kb on + strand at 1996.474 kb on + strand at 1996.475 kb on - strand at 1996.475 kb on - strand at 1996.753 kb on + strand, within Psyr_1757 at 1996.754 kb on - strand, within Psyr_1757 at 1996.754 kb on - strand, within Psyr_1757 at 1996.867 kb on - strand, within Psyr_1757 at 1996.894 kb on + strand, within Psyr_1757 at 1996.895 kb on - strand, within Psyr_1757 at 1996.895 kb on - strand, within Psyr_1757 at 1996.895 kb on - strand, within Psyr_1757 at 1996.895 kb on - strand, within Psyr_1757 at 1996.936 kb on + strand, within Psyr_1757 at 1997.025 kb on + strand, within Psyr_1757 at 1997.025 kb on + strand, within Psyr_1757 at 1997.026 kb on - strand, within Psyr_1757 at 1997.086 kb on + strand, within Psyr_1757 at 1997.086 kb on + strand, within Psyr_1757 at 1997.086 kb on + strand, within Psyr_1757 at 1997.086 kb on + strand, within Psyr_1757 at 1997.086 kb on + strand, within Psyr_1757 at 1997.087 kb on - strand, within Psyr_1757 at 1997.087 kb on - strand, within Psyr_1757 at 1997.087 kb on - strand, within Psyr_1757 at 1997.200 kb on + strand, within Psyr_1757 at 1997.201 kb on - strand, within Psyr_1757 at 1997.201 kb on - strand, within Psyr_1757 at 1997.201 kb on - strand, within Psyr_1757 at 1997.251 kb on + strand, within Psyr_1757 at 1997.251 kb on + strand, within Psyr_1757 at 1997.251 kb on + strand, within Psyr_1757 at 1997.252 kb on - strand, within Psyr_1757 at 1997.252 kb on - strand, within Psyr_1757 at 1997.252 kb on - strand, within Psyr_1757 at 1997.305 kb on + strand, within Psyr_1757 at 1997.306 kb on - strand, within Psyr_1757
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 0.0625 mg/ml remove 1,994,492 - Psyr_1755 0.43 -1.3 1,994,722 + Psyr_1755 0.58 +0.1 1,994,722 + Psyr_1755 0.58 -0.7 1,994,734 + Psyr_1755 0.58 -1.8 1,994,735 - Psyr_1755 0.58 -0.4 1,994,735 - Psyr_1755 0.58 +0.4 1,995,408 + -1.0 1,995,408 + +0.7 1,995,408 + -0.4 1,995,408 + +0.1 1,995,409 - +0.3 1,995,409 - -0.1 1,995,409 - -0.4 1,995,409 - +1.1 1,995,409 - +0.5 1,995,409 - +0.1 1,995,722 + Psyr_1756 0.31 -1.1 1,995,723 - Psyr_1756 0.31 -1.7 1,995,726 + Psyr_1756 0.31 -1.9 1,995,727 - Psyr_1756 0.31 -1.3 1,995,727 - Psyr_1756 0.31 -2.2 1,995,727 - Psyr_1756 0.31 -0.9 1,995,727 - Psyr_1756 0.31 -0.3 1,995,830 + Psyr_1756 0.41 -0.9 1,995,858 + Psyr_1756 0.44 -1.4 1,995,858 + Psyr_1756 0.44 -1.0 1,995,858 + Psyr_1756 0.44 -0.1 1,995,858 + Psyr_1756 0.44 -0.3 1,995,858 + Psyr_1756 0.44 -0.4 1,995,859 - Psyr_1756 0.44 +0.6 1,995,859 - Psyr_1756 0.44 -1.9 1,995,859 - Psyr_1756 0.44 +1.8 1,995,859 - Psyr_1756 0.44 -1.0 1,995,859 - Psyr_1756 0.44 -0.1 1,996,014 + Psyr_1756 0.60 +0.6 1,996,014 + Psyr_1756 0.60 -0.3 1,996,015 - Psyr_1756 0.60 -2.0 1,996,122 + Psyr_1756 0.70 -1.1 1,996,122 + Psyr_1756 0.70 -0.7 1,996,185 + Psyr_1756 0.76 -0.3 1,996,185 + Psyr_1756 0.76 -0.0 1,996,197 + Psyr_1756 0.77 -1.2 1,996,197 + Psyr_1756 0.77 -3.1 1,996,197 + Psyr_1756 0.77 -0.7 1,996,198 - Psyr_1756 0.78 -0.9 1,996,264 - Psyr_1756 0.84 +1.6 1,996,426 + -0.6 1,996,427 - -1.0 1,996,474 + -0.3 1,996,474 + +0.6 1,996,475 - +1.6 1,996,475 - -1.7 1,996,753 + Psyr_1757 0.30 +0.2 1,996,754 - Psyr_1757 0.30 -1.8 1,996,754 - Psyr_1757 0.30 -2.6 1,996,867 - Psyr_1757 0.41 -0.3 1,996,894 + Psyr_1757 0.43 +0.3 1,996,895 - Psyr_1757 0.43 -0.2 1,996,895 - Psyr_1757 0.43 -0.4 1,996,895 - Psyr_1757 0.43 -1.0 1,996,895 - Psyr_1757 0.43 -1.2 1,996,936 + Psyr_1757 0.47 -1.9 1,997,025 + Psyr_1757 0.56 -1.3 1,997,025 + Psyr_1757 0.56 -0.8 1,997,026 - Psyr_1757 0.56 +1.3 1,997,086 + Psyr_1757 0.61 -0.6 1,997,086 + Psyr_1757 0.61 +1.6 1,997,086 + Psyr_1757 0.61 +1.3 1,997,086 + Psyr_1757 0.61 +0.8 1,997,086 + Psyr_1757 0.61 -2.0 1,997,087 - Psyr_1757 0.61 -0.7 1,997,087 - Psyr_1757 0.61 -2.2 1,997,087 - Psyr_1757 0.61 +0.3 1,997,200 + Psyr_1757 0.72 +1.3 1,997,201 - Psyr_1757 0.72 -1.3 1,997,201 - Psyr_1757 0.72 -2.2 1,997,201 - Psyr_1757 0.72 -0.7 1,997,251 + Psyr_1757 0.77 +0.3 1,997,251 + Psyr_1757 0.77 -2.8 1,997,251 + Psyr_1757 0.77 -0.2 1,997,252 - Psyr_1757 0.77 +1.0 1,997,252 - Psyr_1757 0.77 +0.2 1,997,252 - Psyr_1757 0.77 -0.9 1,997,305 + Psyr_1757 0.82 -1.2 1,997,306 - Psyr_1757 0.82 -1.1
Or see this region's nucleotide sequence