Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1698

Experiment: KB with Nitrofurantoin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1696 and Psyr_1697 are separated by 27 nucleotidesPsyr_1697 and Psyr_1698 are separated by 11 nucleotidesPsyr_1698 and Psyr_1699 are separated by 516 nucleotides Psyr_1696: Psyr_1696 - Protein of unknown function DUF350, at 1,903,581 to 1,904,006 _1696 Psyr_1697: Psyr_1697 - conserved hypothetical protein, at 1,904,034 to 1,904,780 _1697 Psyr_1698: Psyr_1698 - Glutathionylspermidine synthase, at 1,904,792 to 1,905,949 _1698 Psyr_1699: Psyr_1699 - Protein of unknown function DUF1329, at 1,906,466 to 1,907,821 _1699 Position (kb) 1904 1905 1906Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1903.796 kb on + strand, within Psyr_1696at 1903.797 kb on - strand, within Psyr_1696at 1903.804 kb on - strand, within Psyr_1696at 1903.804 kb on - strand, within Psyr_1696at 1903.941 kb on + strand, within Psyr_1696at 1903.941 kb on + strand, within Psyr_1696at 1903.941 kb on + strand, within Psyr_1696at 1904.042 kb on + strandat 1904.042 kb on + strandat 1904.042 kb on + strandat 1904.042 kb on + strandat 1904.042 kb on + strandat 1904.042 kb on + strandat 1904.042 kb on + strandat 1904.042 kb on + strandat 1904.043 kb on - strandat 1904.043 kb on - strandat 1904.043 kb on - strandat 1904.043 kb on - strandat 1904.043 kb on - strandat 1904.059 kb on + strandat 1904.183 kb on + strand, within Psyr_1697at 1904.183 kb on + strand, within Psyr_1697at 1904.183 kb on + strand, within Psyr_1697at 1904.199 kb on + strand, within Psyr_1697at 1904.199 kb on + strand, within Psyr_1697at 1904.199 kb on + strand, within Psyr_1697at 1904.199 kb on + strand, within Psyr_1697at 1904.199 kb on + strand, within Psyr_1697at 1904.199 kb on + strand, within Psyr_1697at 1904.199 kb on + strand, within Psyr_1697at 1904.241 kb on + strand, within Psyr_1697at 1904.241 kb on + strand, within Psyr_1697at 1904.241 kb on + strand, within Psyr_1697at 1904.241 kb on + strand, within Psyr_1697at 1904.241 kb on + strand, within Psyr_1697at 1904.241 kb on + strand, within Psyr_1697at 1904.242 kb on - strand, within Psyr_1697at 1904.242 kb on - strand, within Psyr_1697at 1904.242 kb on - strand, within Psyr_1697at 1904.242 kb on - strand, within Psyr_1697at 1904.283 kb on + strand, within Psyr_1697at 1904.310 kb on + strand, within Psyr_1697at 1904.310 kb on + strand, within Psyr_1697at 1904.310 kb on + strand, within Psyr_1697at 1904.310 kb on + strand, within Psyr_1697at 1904.310 kb on + strand, within Psyr_1697at 1904.310 kb on + strand, within Psyr_1697at 1904.310 kb on + strand, within Psyr_1697at 1904.310 kb on + strand, within Psyr_1697at 1904.311 kb on - strand, within Psyr_1697at 1904.311 kb on - strand, within Psyr_1697at 1904.311 kb on - strand, within Psyr_1697at 1904.311 kb on - strand, within Psyr_1697at 1904.311 kb on - strand, within Psyr_1697at 1904.311 kb on - strand, within Psyr_1697at 1904.311 kb on - strand, within Psyr_1697at 1904.311 kb on - strand, within Psyr_1697at 1904.311 kb on - strand, within Psyr_1697at 1904.318 kb on + strand, within Psyr_1697at 1904.494 kb on - strand, within Psyr_1697at 1904.508 kb on + strand, within Psyr_1697at 1904.535 kb on + strand, within Psyr_1697at 1904.535 kb on + strand, within Psyr_1697at 1904.538 kb on + strand, within Psyr_1697at 1904.539 kb on - strand, within Psyr_1697at 1904.539 kb on - strand, within Psyr_1697at 1904.539 kb on - strand, within Psyr_1697at 1904.539 kb on - strand, within Psyr_1697at 1904.623 kb on - strand, within Psyr_1697at 1904.901 kb on - strandat 1904.903 kb on + strandat 1904.903 kb on + strandat 1904.903 kb on + strandat 1905.135 kb on - strand, within Psyr_1698at 1905.309 kb on - strand, within Psyr_1698at 1905.400 kb on + strand, within Psyr_1698at 1905.500 kb on - strand, within Psyr_1698at 1905.589 kb on + strand, within Psyr_1698at 1905.698 kb on + strand, within Psyr_1698at 1905.770 kb on + strand, within Psyr_1698at 1905.771 kb on - strand, within Psyr_1698at 1905.771 kb on - strand, within Psyr_1698at 1905.786 kb on - strand, within Psyr_1698at 1905.786 kb on - strand, within Psyr_1698at 1905.830 kb on + strand, within Psyr_1698at 1905.830 kb on + strand, within Psyr_1698at 1905.830 kb on + strand, within Psyr_1698at 1905.831 kb on + strand, within Psyr_1698at 1905.831 kb on - strand, within Psyr_1698at 1905.831 kb on - strand, within Psyr_1698at 1905.831 kb on - strand, within Psyr_1698at 1905.831 kb on - strand, within Psyr_1698at 1905.991 kb on + strandat 1905.991 kb on + strandat 1906.020 kb on - strandat 1906.020 kb on - strandat 1906.021 kb on + strandat 1906.021 kb on + strandat 1906.022 kb on - strandat 1906.022 kb on - strandat 1906.022 kb on - strandat 1906.044 kb on + strandat 1906.044 kb on + strandat 1906.045 kb on - strandat 1906.045 kb on - strandat 1906.054 kb on + strandat 1906.140 kb on + strandat 1906.145 kb on + strandat 1906.146 kb on - strandat 1906.146 kb on - strandat 1906.146 kb on - strandat 1906.146 kb on - strandat 1906.146 kb on - strandat 1906.146 kb on - strandat 1906.146 kb on - strandat 1906.147 kb on + strandat 1906.147 kb on + strandat 1906.147 kb on + strandat 1906.147 kb on + strandat 1906.147 kb on + strandat 1906.148 kb on - strandat 1906.148 kb on - strandat 1906.148 kb on - strandat 1906.148 kb on - strandat 1906.150 kb on - strandat 1906.150 kb on - strandat 1906.196 kb on - strandat 1906.196 kb on - strandat 1906.234 kb on - strandat 1906.275 kb on - strandat 1906.282 kb on + strandat 1906.282 kb on + strandat 1906.283 kb on - strandat 1906.316 kb on - strandat 1906.408 kb on + strandat 1906.409 kb on - strandat 1906.589 kb on - strandat 1906.709 kb on - strand, within Psyr_1699at 1906.720 kb on + strand, within Psyr_1699at 1906.801 kb on - strand, within Psyr_1699at 1906.910 kb on + strand, within Psyr_1699

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 0.0625 mg/ml
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1,903,796 + Psyr_1696 0.50 -0.2
1,903,797 - Psyr_1696 0.51 -0.3
1,903,804 - Psyr_1696 0.52 +0.2
1,903,804 - Psyr_1696 0.52 -0.7
1,903,941 + Psyr_1696 0.85 -2.2
1,903,941 + Psyr_1696 0.85 -0.2
1,903,941 + Psyr_1696 0.85 -0.2
1,904,042 + -1.4
1,904,042 + -0.2
1,904,042 + +0.6
1,904,042 + -3.3
1,904,042 + +1.4
1,904,042 + +0.9
1,904,042 + -0.1
1,904,042 + +1.4
1,904,043 - -0.4
1,904,043 - +1.0
1,904,043 - +0.1
1,904,043 - -0.3
1,904,043 - +0.6
1,904,059 + -1.0
1,904,183 + Psyr_1697 0.20 -0.5
1,904,183 + Psyr_1697 0.20 -2.1
1,904,183 + Psyr_1697 0.20 -0.5
1,904,199 + Psyr_1697 0.22 +0.4
1,904,199 + Psyr_1697 0.22 -0.1
1,904,199 + Psyr_1697 0.22 +0.4
1,904,199 + Psyr_1697 0.22 -0.1
1,904,199 + Psyr_1697 0.22 +0.1
1,904,199 + Psyr_1697 0.22 +2.8
1,904,199 + Psyr_1697 0.22 +1.0
1,904,241 + Psyr_1697 0.28 -0.2
1,904,241 + Psyr_1697 0.28 -0.3
1,904,241 + Psyr_1697 0.28 +1.8
1,904,241 + Psyr_1697 0.28 +0.7
1,904,241 + Psyr_1697 0.28 +0.0
1,904,241 + Psyr_1697 0.28 -1.3
1,904,242 - Psyr_1697 0.28 -0.4
1,904,242 - Psyr_1697 0.28 -1.8
1,904,242 - Psyr_1697 0.28 -0.0
1,904,242 - Psyr_1697 0.28 +0.0
1,904,283 + Psyr_1697 0.33 -0.1
1,904,310 + Psyr_1697 0.37 -0.5
1,904,310 + Psyr_1697 0.37 -0.4
1,904,310 + Psyr_1697 0.37 -1.7
1,904,310 + Psyr_1697 0.37 +0.1
1,904,310 + Psyr_1697 0.37 -1.0
1,904,310 + Psyr_1697 0.37 -0.5
1,904,310 + Psyr_1697 0.37 -1.4
1,904,310 + Psyr_1697 0.37 -0.7
1,904,311 - Psyr_1697 0.37 -0.1
1,904,311 - Psyr_1697 0.37 -0.9
1,904,311 - Psyr_1697 0.37 +0.5
1,904,311 - Psyr_1697 0.37 +0.0
1,904,311 - Psyr_1697 0.37 -0.4
1,904,311 - Psyr_1697 0.37 +0.4
1,904,311 - Psyr_1697 0.37 +0.5
1,904,311 - Psyr_1697 0.37 -0.3
1,904,311 - Psyr_1697 0.37 -0.7
1,904,318 + Psyr_1697 0.38 -0.2
1,904,494 - Psyr_1697 0.62 +0.1
1,904,508 + Psyr_1697 0.63 +0.3
1,904,535 + Psyr_1697 0.67 -0.3
1,904,535 + Psyr_1697 0.67 -0.3
1,904,538 + Psyr_1697 0.67 -2.4
1,904,539 - Psyr_1697 0.68 +0.7
1,904,539 - Psyr_1697 0.68 +0.2
1,904,539 - Psyr_1697 0.68 -0.1
1,904,539 - Psyr_1697 0.68 -0.7
1,904,623 - Psyr_1697 0.79 +0.4
1,904,901 - -0.2
1,904,903 + +0.6
1,904,903 + -0.1
1,904,903 + +0.4
1,905,135 - Psyr_1698 0.30 +0.3
1,905,309 - Psyr_1698 0.45 -1.4
1,905,400 + Psyr_1698 0.53 +1.1
1,905,500 - Psyr_1698 0.61 +0.8
1,905,589 + Psyr_1698 0.69 -1.3
1,905,698 + Psyr_1698 0.78 -0.6
1,905,770 + Psyr_1698 0.84 +0.4
1,905,771 - Psyr_1698 0.85 -0.6
1,905,771 - Psyr_1698 0.85 -0.4
1,905,786 - Psyr_1698 0.86 -0.5
1,905,786 - Psyr_1698 0.86 -0.2
1,905,830 + Psyr_1698 0.90 -0.7
1,905,830 + Psyr_1698 0.90 +1.8
1,905,830 + Psyr_1698 0.90 -1.1
1,905,831 + Psyr_1698 0.90 -1.7
1,905,831 - Psyr_1698 0.90 +1.8
1,905,831 - Psyr_1698 0.90 +0.0
1,905,831 - Psyr_1698 0.90 +0.4
1,905,831 - Psyr_1698 0.90 +0.0
1,905,991 + -0.6
1,905,991 + -1.2
1,906,020 - +1.1
1,906,020 - +1.0
1,906,021 + -1.7
1,906,021 + +0.2
1,906,022 - +0.2
1,906,022 - +0.8
1,906,022 - -0.7
1,906,044 + -1.2
1,906,044 + +0.6
1,906,045 - +1.1
1,906,045 - +0.9
1,906,054 + +0.1
1,906,140 + +0.6
1,906,145 + +1.0
1,906,146 - +0.3
1,906,146 - -0.8
1,906,146 - +0.9
1,906,146 - -0.2
1,906,146 - +0.4
1,906,146 - +0.6
1,906,146 - +0.5
1,906,147 + -0.9
1,906,147 + -0.3
1,906,147 + -0.3
1,906,147 + -0.4
1,906,147 + +0.5
1,906,148 - -2.0
1,906,148 - -1.7
1,906,148 - +0.3
1,906,148 - +0.4
1,906,150 - +0.2
1,906,150 - -1.7
1,906,196 - -1.6
1,906,196 - +0.2
1,906,234 - -1.3
1,906,275 - -0.9
1,906,282 + +1.8
1,906,282 + +1.6
1,906,283 - +0.0
1,906,316 - +1.1
1,906,408 + +0.2
1,906,409 - +0.0
1,906,589 - +0.8
1,906,709 - Psyr_1699 0.18 +0.3
1,906,720 + Psyr_1699 0.19 -0.3
1,906,801 - Psyr_1699 0.25 +0.6
1,906,910 + Psyr_1699 0.33 +0.7

Or see this region's nucleotide sequence