Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1542

Experiment: KB with Nitrofurantoin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1540 and Psyr_1541 are separated by 54 nucleotidesPsyr_1541 and Psyr_1542 are separated by 315 nucleotidesPsyr_1542 and Psyr_1543 are separated by 80 nucleotides Psyr_1540: Psyr_1540 - hypothetical protein, at 1,734,618 to 1,734,884 _1540 Psyr_1541: Psyr_1541 - DedA, at 1,734,939 to 1,735,520 _1541 Psyr_1542: Psyr_1542 - quinolinate synthetase, at 1,735,836 to 1,736,894 _1542 Psyr_1543: Psyr_1543 - Peptidase M48, Ste24p, at 1,736,975 to 1,738,408 _1543 Position (kb) 1735 1736 1737Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1734.865 kb on - strandat 1734.926 kb on + strandat 1734.926 kb on + strandat 1734.926 kb on + strandat 1735.043 kb on + strand, within Psyr_1541at 1735.127 kb on - strand, within Psyr_1541at 1735.258 kb on - strand, within Psyr_1541at 1735.280 kb on + strand, within Psyr_1541at 1735.280 kb on + strand, within Psyr_1541at 1735.280 kb on + strand, within Psyr_1541at 1735.288 kb on + strand, within Psyr_1541at 1735.289 kb on - strand, within Psyr_1541at 1735.289 kb on - strand, within Psyr_1541at 1735.405 kb on + strand, within Psyr_1541at 1735.405 kb on + strand, within Psyr_1541at 1735.406 kb on - strand, within Psyr_1541at 1735.485 kb on + strandat 1735.485 kb on + strandat 1735.548 kb on - strandat 1735.548 kb on - strandat 1735.660 kb on + strandat 1735.661 kb on - strandat 1735.680 kb on - strandat 1735.696 kb on - strandat 1735.696 kb on - strandat 1735.731 kb on + strandat 1735.732 kb on - strandat 1735.732 kb on - strandat 1735.741 kb on + strandat 1735.741 kb on + strandat 1735.742 kb on - strandat 1735.742 kb on - strandat 1735.742 kb on - strandat 1735.742 kb on - strandat 1735.774 kb on - strandat 1735.783 kb on - strandat 1735.783 kb on - strandat 1735.793 kb on + strandat 1735.794 kb on - strandat 1735.980 kb on + strand, within Psyr_1542at 1735.980 kb on + strand, within Psyr_1542at 1735.980 kb on + strand, within Psyr_1542at 1735.980 kb on + strand, within Psyr_1542at 1735.981 kb on - strand, within Psyr_1542at 1735.983 kb on + strand, within Psyr_1542at 1735.983 kb on + strand, within Psyr_1542at 1735.984 kb on - strand, within Psyr_1542at 1735.984 kb on - strand, within Psyr_1542at 1735.984 kb on - strand, within Psyr_1542at 1735.984 kb on - strand, within Psyr_1542at 1735.984 kb on - strand, within Psyr_1542at 1735.984 kb on - strand, within Psyr_1542at 1736.086 kb on + strand, within Psyr_1542at 1736.086 kb on + strand, within Psyr_1542at 1736.087 kb on - strand, within Psyr_1542at 1736.087 kb on - strand, within Psyr_1542at 1736.087 kb on - strand, within Psyr_1542at 1736.253 kb on + strand, within Psyr_1542at 1736.253 kb on + strand, within Psyr_1542at 1736.253 kb on + strand, within Psyr_1542at 1736.253 kb on + strand, within Psyr_1542at 1736.253 kb on + strand, within Psyr_1542at 1736.254 kb on - strand, within Psyr_1542at 1736.254 kb on - strand, within Psyr_1542at 1736.254 kb on - strand, within Psyr_1542at 1736.254 kb on - strand, within Psyr_1542at 1736.388 kb on + strand, within Psyr_1542at 1736.389 kb on - strand, within Psyr_1542at 1736.747 kb on + strand, within Psyr_1542at 1736.747 kb on + strand, within Psyr_1542at 1736.748 kb on - strand, within Psyr_1542at 1736.794 kb on + strandat 1736.794 kb on + strandat 1736.795 kb on - strandat 1736.827 kb on + strandat 1736.827 kb on + strandat 1736.828 kb on - strandat 1736.943 kb on + strandat 1736.943 kb on + strandat 1736.943 kb on + strandat 1736.943 kb on + strandat 1736.943 kb on + strandat 1736.944 kb on - strandat 1736.944 kb on - strandat 1736.944 kb on - strandat 1737.037 kb on + strandat 1737.037 kb on + strandat 1737.038 kb on - strandat 1737.130 kb on - strand, within Psyr_1543at 1737.130 kb on - strand, within Psyr_1543at 1737.130 kb on - strand, within Psyr_1543at 1737.195 kb on + strand, within Psyr_1543at 1737.196 kb on - strand, within Psyr_1543at 1737.310 kb on - strand, within Psyr_1543at 1737.405 kb on + strand, within Psyr_1543at 1737.405 kb on + strand, within Psyr_1543at 1737.405 kb on + strand, within Psyr_1543at 1737.405 kb on + strand, within Psyr_1543at 1737.405 kb on + strand, within Psyr_1543at 1737.405 kb on + strand, within Psyr_1543at 1737.405 kb on + strand, within Psyr_1543at 1737.406 kb on - strand, within Psyr_1543at 1737.406 kb on - strand, within Psyr_1543at 1737.406 kb on - strand, within Psyr_1543at 1737.406 kb on - strand, within Psyr_1543at 1737.406 kb on - strand, within Psyr_1543at 1737.409 kb on + strand, within Psyr_1543at 1737.580 kb on - strand, within Psyr_1543

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 0.0625 mg/ml
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1,734,865 - -0.6
1,734,926 + -0.1
1,734,926 + +0.9
1,734,926 + -3.0
1,735,043 + Psyr_1541 0.18 -0.3
1,735,127 - Psyr_1541 0.32 +0.3
1,735,258 - Psyr_1541 0.55 +1.5
1,735,280 + Psyr_1541 0.59 +1.0
1,735,280 + Psyr_1541 0.59 +0.6
1,735,280 + Psyr_1541 0.59 -0.3
1,735,288 + Psyr_1541 0.60 -0.3
1,735,289 - Psyr_1541 0.60 -0.1
1,735,289 - Psyr_1541 0.60 -0.1
1,735,405 + Psyr_1541 0.80 +0.7
1,735,405 + Psyr_1541 0.80 +1.1
1,735,406 - Psyr_1541 0.80 -0.2
1,735,485 + -1.5
1,735,485 + -1.2
1,735,548 - -1.8
1,735,548 - -0.9
1,735,660 + -0.1
1,735,661 - +0.7
1,735,680 - -0.9
1,735,696 - +1.2
1,735,696 - -1.0
1,735,731 + -0.3
1,735,732 - -0.2
1,735,732 - -0.7
1,735,741 + +0.9
1,735,741 + -1.1
1,735,742 - +0.4
1,735,742 - -0.4
1,735,742 - -0.7
1,735,742 - +0.7
1,735,774 - -2.6
1,735,783 - -0.0
1,735,783 - +0.8
1,735,793 + +0.7
1,735,794 - +0.4
1,735,980 + Psyr_1542 0.14 -0.2
1,735,980 + Psyr_1542 0.14 -0.3
1,735,980 + Psyr_1542 0.14 +0.3
1,735,980 + Psyr_1542 0.14 +3.5
1,735,981 - Psyr_1542 0.14 +1.8
1,735,983 + Psyr_1542 0.14 +0.2
1,735,983 + Psyr_1542 0.14 -1.9
1,735,984 - Psyr_1542 0.14 -1.6
1,735,984 - Psyr_1542 0.14 -0.2
1,735,984 - Psyr_1542 0.14 +1.4
1,735,984 - Psyr_1542 0.14 +0.4
1,735,984 - Psyr_1542 0.14 +0.6
1,735,984 - Psyr_1542 0.14 +0.3
1,736,086 + Psyr_1542 0.24 +1.4
1,736,086 + Psyr_1542 0.24 -0.7
1,736,087 - Psyr_1542 0.24 -0.2
1,736,087 - Psyr_1542 0.24 -0.7
1,736,087 - Psyr_1542 0.24 +0.4
1,736,253 + Psyr_1542 0.39 +0.4
1,736,253 + Psyr_1542 0.39 -0.6
1,736,253 + Psyr_1542 0.39 -0.6
1,736,253 + Psyr_1542 0.39 -0.0
1,736,253 + Psyr_1542 0.39 +0.2
1,736,254 - Psyr_1542 0.39 +0.8
1,736,254 - Psyr_1542 0.39 -0.1
1,736,254 - Psyr_1542 0.39 +0.7
1,736,254 - Psyr_1542 0.39 -0.4
1,736,388 + Psyr_1542 0.52 +0.0
1,736,389 - Psyr_1542 0.52 -0.5
1,736,747 + Psyr_1542 0.86 -0.0
1,736,747 + Psyr_1542 0.86 +0.4
1,736,748 - Psyr_1542 0.86 -0.9
1,736,794 + -1.5
1,736,794 + -1.6
1,736,795 - -0.4
1,736,827 + -0.6
1,736,827 + -0.4
1,736,828 - +0.8
1,736,943 + +0.8
1,736,943 + +1.0
1,736,943 + -0.7
1,736,943 + -0.2
1,736,943 + +0.1
1,736,944 - +0.3
1,736,944 - -0.5
1,736,944 - +0.2
1,737,037 + -0.8
1,737,037 + -1.3
1,737,038 - -0.6
1,737,130 - Psyr_1543 0.11 +0.1
1,737,130 - Psyr_1543 0.11 +0.7
1,737,130 - Psyr_1543 0.11 +0.3
1,737,195 + Psyr_1543 0.15 +0.2
1,737,196 - Psyr_1543 0.15 -2.3
1,737,310 - Psyr_1543 0.23 +0.3
1,737,405 + Psyr_1543 0.30 +0.7
1,737,405 + Psyr_1543 0.30 +1.3
1,737,405 + Psyr_1543 0.30 -1.6
1,737,405 + Psyr_1543 0.30 -0.2
1,737,405 + Psyr_1543 0.30 -0.1
1,737,405 + Psyr_1543 0.30 -0.9
1,737,405 + Psyr_1543 0.30 -0.2
1,737,406 - Psyr_1543 0.30 -0.0
1,737,406 - Psyr_1543 0.30 -1.3
1,737,406 - Psyr_1543 0.30 +0.1
1,737,406 - Psyr_1543 0.30 -0.3
1,737,406 - Psyr_1543 0.30 -0.1
1,737,409 + Psyr_1543 0.30 +0.1
1,737,580 - Psyr_1543 0.42 -0.2

Or see this region's nucleotide sequence