Experiment: KB with Nitrofurantoin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1539 and Psyr_1540 are separated by 385 nucleotides Psyr_1540 and Psyr_1541 are separated by 54 nucleotides
Psyr_1539: Psyr_1539 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 1,732,352 to 1,734,232
_1539
Psyr_1540: Psyr_1540 - hypothetical protein, at 1,734,618 to 1,734,884
_1540
Psyr_1541: Psyr_1541 - DedA, at 1,734,939 to 1,735,520
_1541
Position (kb) 1732
1733
1734
1735 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1731.354 kb on + strand at 1731.354 kb on + strand at 1731.354 kb on + strand at 1731.354 kb on + strand at 1731.354 kb on + strand at 1731.354 kb on + strand at 1731.354 kb on + strand at 1731.354 kb on + strand at 1731.354 kb on + strand at 1731.354 kb on + strand at 1731.355 kb on - strand at 1731.355 kb on - strand at 1731.355 kb on - strand at 1731.355 kb on - strand at 1731.355 kb on - strand at 1731.355 kb on - strand at 1731.355 kb on - strand at 1731.355 kb on - strand at 1731.355 kb on - strand at 1731.355 kb on - strand at 1731.388 kb on + strand at 1731.388 kb on + strand at 1731.389 kb on - strand at 1731.389 kb on - strand at 1731.428 kb on + strand at 1731.484 kb on + strand at 1731.484 kb on + strand at 1731.485 kb on - strand at 1731.619 kb on + strand at 1731.664 kb on + strand at 1731.713 kb on + strand at 1731.744 kb on + strand at 1731.744 kb on + strand at 1731.745 kb on - strand at 1731.745 kb on - strand at 1731.745 kb on - strand at 1731.804 kb on + strand at 1731.804 kb on + strand at 1731.841 kb on + strand at 1731.841 kb on + strand at 1731.842 kb on - strand at 1731.875 kb on + strand at 1731.894 kb on + strand at 1731.895 kb on - strand at 1731.902 kb on + strand at 1731.902 kb on + strand at 1731.903 kb on - strand at 1731.905 kb on + strand at 1731.905 kb on + strand at 1731.906 kb on - strand at 1731.906 kb on - strand at 1732.041 kb on + strand at 1732.042 kb on - strand at 1732.042 kb on - strand at 1732.042 kb on - strand at 1732.047 kb on + strand at 1732.047 kb on + strand at 1732.113 kb on + strand at 1732.114 kb on - strand at 1732.129 kb on - strand at 1732.230 kb on + strand at 1732.260 kb on + strand at 1732.260 kb on + strand at 1732.260 kb on + strand at 1732.260 kb on + strand at 1732.261 kb on - strand at 1732.310 kb on + strand at 1732.316 kb on + strand at 1732.316 kb on + strand at 1732.317 kb on - strand at 1732.317 kb on - strand at 1732.317 kb on - strand at 1732.317 kb on - strand at 1732.317 kb on - strand at 1732.317 kb on - strand at 1732.317 kb on - strand at 1732.318 kb on + strand at 1732.318 kb on + strand at 1732.318 kb on + strand at 1732.318 kb on + strand at 1732.319 kb on - strand at 1732.319 kb on - strand at 1732.319 kb on - strand at 1732.344 kb on + strand at 1732.348 kb on + strand at 1732.348 kb on + strand at 1732.348 kb on + strand at 1732.348 kb on + strand at 1732.349 kb on - strand at 1732.349 kb on - strand at 1732.349 kb on - strand at 1732.351 kb on + strand at 1732.352 kb on - strand at 1732.418 kb on + strand at 1732.420 kb on + strand at 1732.420 kb on + strand at 1732.421 kb on - strand at 1732.630 kb on + strand, within Psyr_1539 at 1732.685 kb on + strand, within Psyr_1539 at 1732.685 kb on + strand, within Psyr_1539 at 1732.685 kb on + strand, within Psyr_1539 at 1732.686 kb on - strand, within Psyr_1539 at 1732.686 kb on - strand, within Psyr_1539 at 1732.686 kb on - strand, within Psyr_1539 at 1732.686 kb on - strand, within Psyr_1539 at 1732.686 kb on - strand, within Psyr_1539 at 1732.686 kb on - strand, within Psyr_1539 at 1732.686 kb on - strand, within Psyr_1539 at 1732.686 kb on - strand, within Psyr_1539 at 1732.686 kb on - strand, within Psyr_1539 at 1732.687 kb on + strand, within Psyr_1539 at 1732.687 kb on + strand, within Psyr_1539 at 1732.844 kb on - strand, within Psyr_1539 at 1732.844 kb on - strand, within Psyr_1539 at 1732.880 kb on + strand, within Psyr_1539 at 1732.880 kb on + strand, within Psyr_1539 at 1732.881 kb on - strand, within Psyr_1539 at 1732.881 kb on - strand, within Psyr_1539 at 1732.883 kb on - strand, within Psyr_1539 at 1732.883 kb on - strand, within Psyr_1539 at 1732.897 kb on + strand, within Psyr_1539 at 1732.898 kb on - strand, within Psyr_1539 at 1732.929 kb on + strand, within Psyr_1539 at 1732.929 kb on + strand, within Psyr_1539 at 1732.966 kb on + strand, within Psyr_1539 at 1732.967 kb on - strand, within Psyr_1539 at 1732.967 kb on - strand, within Psyr_1539 at 1733.018 kb on + strand, within Psyr_1539 at 1733.018 kb on + strand, within Psyr_1539 at 1733.018 kb on + strand, within Psyr_1539 at 1733.018 kb on + strand, within Psyr_1539 at 1733.018 kb on + strand, within Psyr_1539 at 1733.018 kb on + strand, within Psyr_1539 at 1733.019 kb on - strand, within Psyr_1539 at 1733.019 kb on - strand, within Psyr_1539 at 1733.019 kb on - strand, within Psyr_1539 at 1733.019 kb on - strand, within Psyr_1539 at 1733.019 kb on - strand, within Psyr_1539 at 1733.019 kb on - strand, within Psyr_1539 at 1733.019 kb on - strand, within Psyr_1539 at 1733.019 kb on - strand, within Psyr_1539 at 1733.040 kb on + strand, within Psyr_1539 at 1733.040 kb on + strand, within Psyr_1539 at 1733.040 kb on + strand, within Psyr_1539 at 1733.040 kb on + strand, within Psyr_1539 at 1733.040 kb on + strand, within Psyr_1539 at 1733.040 kb on + strand, within Psyr_1539 at 1733.041 kb on - strand, within Psyr_1539 at 1733.041 kb on - strand, within Psyr_1539 at 1733.041 kb on - strand, within Psyr_1539 at 1733.041 kb on - strand, within Psyr_1539 at 1733.081 kb on - strand, within Psyr_1539 at 1733.237 kb on - strand, within Psyr_1539 at 1733.305 kb on + strand, within Psyr_1539 at 1733.305 kb on + strand, within Psyr_1539 at 1733.305 kb on + strand, within Psyr_1539 at 1733.305 kb on + strand, within Psyr_1539 at 1733.306 kb on - strand, within Psyr_1539 at 1733.306 kb on - strand, within Psyr_1539 at 1733.550 kb on + strand, within Psyr_1539 at 1733.551 kb on - strand, within Psyr_1539 at 1733.558 kb on - strand, within Psyr_1539 at 1733.575 kb on - strand, within Psyr_1539 at 1733.575 kb on - strand, within Psyr_1539 at 1733.578 kb on + strand, within Psyr_1539 at 1733.646 kb on + strand, within Psyr_1539 at 1733.646 kb on + strand, within Psyr_1539 at 1733.647 kb on - strand, within Psyr_1539 at 1733.707 kb on + strand, within Psyr_1539 at 1733.707 kb on + strand, within Psyr_1539 at 1733.708 kb on - strand, within Psyr_1539 at 1733.896 kb on + strand, within Psyr_1539 at 1733.897 kb on - strand, within Psyr_1539 at 1733.898 kb on + strand, within Psyr_1539 at 1733.898 kb on + strand, within Psyr_1539 at 1733.899 kb on - strand, within Psyr_1539 at 1733.927 kb on - strand, within Psyr_1539 at 1733.927 kb on - strand, within Psyr_1539 at 1733.983 kb on + strand, within Psyr_1539 at 1733.984 kb on - strand, within Psyr_1539 at 1734.010 kb on + strand, within Psyr_1539 at 1734.011 kb on - strand, within Psyr_1539 at 1734.011 kb on - strand, within Psyr_1539 at 1734.011 kb on - strand, within Psyr_1539 at 1734.011 kb on - strand, within Psyr_1539 at 1734.011 kb on - strand, within Psyr_1539 at 1734.014 kb on - strand, within Psyr_1539 at 1734.079 kb on + strand at 1734.080 kb on - strand at 1734.080 kb on - strand at 1734.097 kb on - strand at 1734.097 kb on - strand at 1734.379 kb on + strand at 1734.379 kb on + strand at 1734.379 kb on + strand at 1734.379 kb on + strand at 1734.379 kb on + strand at 1734.380 kb on - strand at 1734.380 kb on - strand at 1734.380 kb on - strand at 1734.380 kb on - strand at 1734.380 kb on - strand at 1734.391 kb on + strand at 1734.391 kb on + strand at 1734.391 kb on + strand at 1734.391 kb on + strand at 1734.392 kb on - strand at 1734.392 kb on - strand at 1734.392 kb on - strand at 1734.467 kb on - strand at 1734.494 kb on + strand at 1734.494 kb on + strand at 1734.494 kb on + strand at 1734.494 kb on + strand at 1734.494 kb on + strand at 1734.495 kb on - strand at 1734.495 kb on - strand at 1734.495 kb on - strand at 1734.495 kb on - strand at 1734.495 kb on - strand at 1734.495 kb on - strand at 1734.495 kb on - strand at 1734.495 kb on - strand at 1734.495 kb on - strand at 1734.495 kb on - strand at 1734.496 kb on + strand at 1734.528 kb on + strand at 1734.529 kb on - strand at 1734.613 kb on + strand at 1734.614 kb on - strand at 1734.615 kb on - strand at 1734.767 kb on + strand, within Psyr_1540 at 1734.768 kb on - strand, within Psyr_1540 at 1734.768 kb on - strand, within Psyr_1540 at 1734.789 kb on + strand, within Psyr_1540 at 1734.790 kb on - strand, within Psyr_1540 at 1734.804 kb on - strand, within Psyr_1540 at 1734.821 kb on + strand, within Psyr_1540 at 1734.865 kb on - strand at 1734.926 kb on + strand at 1734.926 kb on + strand at 1734.926 kb on + strand at 1735.043 kb on + strand, within Psyr_1541 at 1735.127 kb on - strand, within Psyr_1541
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 0.0625 mg/ml remove 1,731,354 + -2.8 1,731,354 + -1.6 1,731,354 + -0.8 1,731,354 + -0.3 1,731,354 + +0.9 1,731,354 + +0.7 1,731,354 + -0.9 1,731,354 + -1.9 1,731,354 + -0.5 1,731,354 + +0.6 1,731,355 - +0.5 1,731,355 - -0.0 1,731,355 - -0.2 1,731,355 - +1.3 1,731,355 - -1.3 1,731,355 - -0.1 1,731,355 - -0.3 1,731,355 - -0.8 1,731,355 - +0.5 1,731,355 - +0.6 1,731,388 + +0.5 1,731,388 + -0.0 1,731,389 - +0.8 1,731,389 - +0.5 1,731,428 + +0.4 1,731,484 + +0.8 1,731,484 + -0.3 1,731,485 - +1.5 1,731,619 + +0.6 1,731,664 + +0.7 1,731,713 + -0.1 1,731,744 + -0.3 1,731,744 + +0.3 1,731,745 - -0.3 1,731,745 - +0.9 1,731,745 - +0.7 1,731,804 + -2.1 1,731,804 + -0.2 1,731,841 + +0.2 1,731,841 + +0.7 1,731,842 - -0.1 1,731,875 + -0.4 1,731,894 + +1.0 1,731,895 - -0.0 1,731,902 + +0.4 1,731,902 + +0.5 1,731,903 - +0.7 1,731,905 + -1.4 1,731,905 + +1.1 1,731,906 - -1.0 1,731,906 - +0.4 1,732,041 + +0.4 1,732,042 - -1.0 1,732,042 - -0.6 1,732,042 - -0.5 1,732,047 + -0.4 1,732,047 + -0.1 1,732,113 + -0.5 1,732,114 - +0.2 1,732,129 - +0.8 1,732,230 + -0.4 1,732,260 + +0.2 1,732,260 + -0.9 1,732,260 + -0.6 1,732,260 + -1.3 1,732,261 - +0.6 1,732,310 + +0.4 1,732,316 + +0.3 1,732,316 + -0.0 1,732,317 - -0.7 1,732,317 - +1.2 1,732,317 - +1.0 1,732,317 - -0.5 1,732,317 - -0.0 1,732,317 - +0.8 1,732,317 - +0.3 1,732,318 + +0.9 1,732,318 + -0.6 1,732,318 + +0.3 1,732,318 + -1.5 1,732,319 - -1.3 1,732,319 - -0.7 1,732,319 - -0.3 1,732,344 + +1.1 1,732,348 + -0.3 1,732,348 + -0.6 1,732,348 + -0.1 1,732,348 + +1.0 1,732,349 - -0.9 1,732,349 - +0.7 1,732,349 - -0.3 1,732,351 + +0.7 1,732,352 - +0.7 1,732,418 + +0.7 1,732,420 + -0.9 1,732,420 + -1.1 1,732,421 - -1.9 1,732,630 + Psyr_1539 0.15 +0.3 1,732,685 + Psyr_1539 0.18 +1.4 1,732,685 + Psyr_1539 0.18 -0.4 1,732,685 + Psyr_1539 0.18 -0.2 1,732,686 - Psyr_1539 0.18 -0.4 1,732,686 - Psyr_1539 0.18 +0.9 1,732,686 - Psyr_1539 0.18 -0.5 1,732,686 - Psyr_1539 0.18 -1.5 1,732,686 - Psyr_1539 0.18 -0.2 1,732,686 - Psyr_1539 0.18 +0.2 1,732,686 - Psyr_1539 0.18 -0.8 1,732,686 - Psyr_1539 0.18 +0.9 1,732,686 - Psyr_1539 0.18 -0.1 1,732,687 + Psyr_1539 0.18 -0.1 1,732,687 + Psyr_1539 0.18 +1.2 1,732,844 - Psyr_1539 0.26 +0.6 1,732,844 - Psyr_1539 0.26 +0.3 1,732,880 + Psyr_1539 0.28 +0.3 1,732,880 + Psyr_1539 0.28 -0.2 1,732,881 - Psyr_1539 0.28 -0.1 1,732,881 - Psyr_1539 0.28 -2.6 1,732,883 - Psyr_1539 0.28 -1.9 1,732,883 - Psyr_1539 0.28 -0.0 1,732,897 + Psyr_1539 0.29 -0.3 1,732,898 - Psyr_1539 0.29 -0.6 1,732,929 + Psyr_1539 0.31 -0.3 1,732,929 + Psyr_1539 0.31 +0.2 1,732,966 + Psyr_1539 0.33 -0.9 1,732,967 - Psyr_1539 0.33 -0.7 1,732,967 - Psyr_1539 0.33 +0.4 1,733,018 + Psyr_1539 0.35 +0.0 1,733,018 + Psyr_1539 0.35 -1.1 1,733,018 + Psyr_1539 0.35 +0.7 1,733,018 + Psyr_1539 0.35 +0.9 1,733,018 + Psyr_1539 0.35 +1.7 1,733,018 + Psyr_1539 0.35 +0.7 1,733,019 - Psyr_1539 0.35 -0.3 1,733,019 - Psyr_1539 0.35 +0.2 1,733,019 - Psyr_1539 0.35 +0.2 1,733,019 - Psyr_1539 0.35 -2.1 1,733,019 - Psyr_1539 0.35 -1.3 1,733,019 - Psyr_1539 0.35 -1.6 1,733,019 - Psyr_1539 0.35 -0.6 1,733,019 - Psyr_1539 0.35 -0.7 1,733,040 + Psyr_1539 0.37 +0.4 1,733,040 + Psyr_1539 0.37 +0.6 1,733,040 + Psyr_1539 0.37 -1.0 1,733,040 + Psyr_1539 0.37 +0.7 1,733,040 + Psyr_1539 0.37 -1.4 1,733,040 + Psyr_1539 0.37 -0.1 1,733,041 - Psyr_1539 0.37 +0.9 1,733,041 - Psyr_1539 0.37 -0.7 1,733,041 - Psyr_1539 0.37 -0.5 1,733,041 - Psyr_1539 0.37 -0.1 1,733,081 - Psyr_1539 0.39 -0.1 1,733,237 - Psyr_1539 0.47 -0.6 1,733,305 + Psyr_1539 0.51 +0.2 1,733,305 + Psyr_1539 0.51 -0.4 1,733,305 + Psyr_1539 0.51 -3.5 1,733,305 + Psyr_1539 0.51 -1.6 1,733,306 - Psyr_1539 0.51 +0.2 1,733,306 - Psyr_1539 0.51 -1.4 1,733,550 + Psyr_1539 0.64 -0.7 1,733,551 - Psyr_1539 0.64 -0.5 1,733,558 - Psyr_1539 0.64 +0.2 1,733,575 - Psyr_1539 0.65 +0.7 1,733,575 - Psyr_1539 0.65 -0.0 1,733,578 + Psyr_1539 0.65 -0.3 1,733,646 + Psyr_1539 0.69 -0.4 1,733,646 + Psyr_1539 0.69 -1.1 1,733,647 - Psyr_1539 0.69 -0.5 1,733,707 + Psyr_1539 0.72 +0.8 1,733,707 + Psyr_1539 0.72 +0.2 1,733,708 - Psyr_1539 0.72 -0.4 1,733,896 + Psyr_1539 0.82 -0.9 1,733,897 - Psyr_1539 0.82 -0.2 1,733,898 + Psyr_1539 0.82 +0.5 1,733,898 + Psyr_1539 0.82 +0.1 1,733,899 - Psyr_1539 0.82 +0.8 1,733,927 - Psyr_1539 0.84 -0.8 1,733,927 - Psyr_1539 0.84 -1.6 1,733,983 + Psyr_1539 0.87 +1.3 1,733,984 - Psyr_1539 0.87 +0.0 1,734,010 + Psyr_1539 0.88 -0.3 1,734,011 - Psyr_1539 0.88 +0.3 1,734,011 - Psyr_1539 0.88 -0.0 1,734,011 - Psyr_1539 0.88 -0.1 1,734,011 - Psyr_1539 0.88 +1.4 1,734,011 - Psyr_1539 0.88 -1.2 1,734,014 - Psyr_1539 0.88 -1.7 1,734,079 + -0.7 1,734,080 - +0.1 1,734,080 - -3.2 1,734,097 - -2.6 1,734,097 - -1.3 1,734,379 + -0.4 1,734,379 + -0.5 1,734,379 + -0.3 1,734,379 + +0.2 1,734,379 + +0.9 1,734,380 - +1.0 1,734,380 - -0.4 1,734,380 - +0.5 1,734,380 - -0.4 1,734,380 - +1.0 1,734,391 + -0.0 1,734,391 + +0.8 1,734,391 + -0.2 1,734,391 + -0.4 1,734,392 - -0.1 1,734,392 - +0.2 1,734,392 - -0.1 1,734,467 - -0.0 1,734,494 + -0.9 1,734,494 + -0.2 1,734,494 + +1.2 1,734,494 + +0.2 1,734,494 + +0.0 1,734,495 - -0.3 1,734,495 - -0.4 1,734,495 - -0.3 1,734,495 - -0.2 1,734,495 - -0.7 1,734,495 - -0.3 1,734,495 - -0.4 1,734,495 - -0.7 1,734,495 - +0.4 1,734,495 - -1.8 1,734,496 + +0.8 1,734,528 + +0.0 1,734,529 - +0.1 1,734,613 + -0.1 1,734,614 - +0.8 1,734,615 - -1.5 1,734,767 + Psyr_1540 0.56 -0.8 1,734,768 - Psyr_1540 0.56 +0.4 1,734,768 - Psyr_1540 0.56 +0.0 1,734,789 + Psyr_1540 0.64 -0.0 1,734,790 - Psyr_1540 0.64 -1.1 1,734,804 - Psyr_1540 0.70 -0.1 1,734,821 + Psyr_1540 0.76 +1.7 1,734,865 - -0.6 1,734,926 + -0.1 1,734,926 + +0.9 1,734,926 + -3.0 1,735,043 + Psyr_1541 0.18 -0.3 1,735,127 - Psyr_1541 0.32 +0.3
Or see this region's nucleotide sequence