Experiment: KB with Nitrofurantoin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1403 and Psyr_1404 are separated by 845 nucleotides Psyr_1404 and Psyr_1405 are separated by 341 nucleotides Psyr_1405 and Psyr_1406 are separated by 292 nucleotides
Psyr_1403: Psyr_1403 - cold-shock DNA-binding protein family, at 1,589,661 to 1,589,882
_1403
Psyr_1404: Psyr_1404 - Ferritin and Dps, at 1,590,728 to 1,591,201
_1404
Psyr_1405: Psyr_1405 - hypothetical protein, at 1,591,543 to 1,591,887
_1405
Psyr_1406: Psyr_1406 - aspartate--tRNA(Asn) ligase, at 1,592,180 to 1,593,955
_1406
Position (kb) 1590
1591
1592 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1589.914 kb on + strand at 1589.914 kb on + strand at 1589.915 kb on - strand at 1589.915 kb on - strand at 1589.915 kb on - strand at 1589.915 kb on - strand at 1590.028 kb on - strand at 1590.036 kb on + strand at 1590.037 kb on - strand at 1590.083 kb on + strand at 1590.084 kb on - strand at 1590.084 kb on - strand at 1590.145 kb on - strand at 1590.182 kb on - strand at 1590.200 kb on + strand at 1590.209 kb on + strand at 1590.210 kb on - strand at 1590.213 kb on + strand at 1590.306 kb on + strand at 1590.306 kb on + strand at 1590.306 kb on + strand at 1590.306 kb on + strand at 1590.371 kb on + strand at 1590.371 kb on + strand at 1590.371 kb on + strand at 1590.372 kb on - strand at 1590.372 kb on - strand at 1590.372 kb on - strand at 1590.372 kb on - strand at 1590.415 kb on - strand at 1590.437 kb on + strand at 1590.500 kb on + strand at 1590.501 kb on - strand at 1590.503 kb on + strand at 1590.503 kb on + strand at 1590.503 kb on + strand at 1590.504 kb on - strand at 1590.504 kb on - strand at 1590.504 kb on - strand at 1590.504 kb on - strand at 1590.550 kb on + strand at 1590.551 kb on - strand at 1590.641 kb on + strand at 1590.641 kb on + strand at 1590.806 kb on + strand, within Psyr_1404 at 1590.806 kb on + strand, within Psyr_1404 at 1590.806 kb on + strand, within Psyr_1404 at 1590.806 kb on + strand, within Psyr_1404 at 1590.806 kb on + strand, within Psyr_1404 at 1590.806 kb on + strand, within Psyr_1404 at 1590.806 kb on + strand, within Psyr_1404 at 1590.806 kb on + strand, within Psyr_1404 at 1590.806 kb on + strand, within Psyr_1404 at 1590.806 kb on + strand, within Psyr_1404 at 1590.806 kb on + strand, within Psyr_1404 at 1590.806 kb on + strand, within Psyr_1404 at 1590.806 kb on + strand, within Psyr_1404 at 1590.806 kb on + strand, within Psyr_1404 at 1590.807 kb on - strand, within Psyr_1404 at 1590.807 kb on - strand, within Psyr_1404 at 1590.807 kb on - strand, within Psyr_1404 at 1590.807 kb on - strand, within Psyr_1404 at 1590.807 kb on - strand, within Psyr_1404 at 1590.807 kb on - strand, within Psyr_1404 at 1590.807 kb on - strand, within Psyr_1404 at 1590.807 kb on - strand, within Psyr_1404 at 1590.807 kb on - strand, within Psyr_1404 at 1590.807 kb on - strand, within Psyr_1404 at 1590.893 kb on + strand, within Psyr_1404 at 1590.893 kb on + strand, within Psyr_1404 at 1590.894 kb on - strand, within Psyr_1404 at 1590.894 kb on - strand, within Psyr_1404 at 1590.894 kb on - strand, within Psyr_1404 at 1590.894 kb on - strand, within Psyr_1404 at 1590.894 kb on - strand, within Psyr_1404 at 1590.894 kb on - strand, within Psyr_1404 at 1590.969 kb on - strand, within Psyr_1404 at 1590.978 kb on - strand, within Psyr_1404 at 1591.030 kb on + strand, within Psyr_1404 at 1591.031 kb on - strand, within Psyr_1404 at 1591.031 kb on - strand, within Psyr_1404 at 1591.031 kb on - strand, within Psyr_1404 at 1591.072 kb on + strand, within Psyr_1404 at 1591.081 kb on + strand, within Psyr_1404 at 1591.081 kb on + strand, within Psyr_1404 at 1591.081 kb on + strand, within Psyr_1404 at 1591.082 kb on - strand, within Psyr_1404 at 1591.085 kb on - strand, within Psyr_1404 at 1591.199 kb on + strand at 1591.200 kb on - strand at 1591.200 kb on - strand at 1591.266 kb on - strand at 1591.281 kb on + strand at 1591.282 kb on - strand at 1591.383 kb on + strand at 1591.468 kb on + strand at 1591.470 kb on + strand at 1591.485 kb on - strand at 1591.572 kb on + strand at 1591.572 kb on + strand at 1591.573 kb on - strand at 1591.599 kb on - strand, within Psyr_1405 at 1591.630 kb on - strand, within Psyr_1405 at 1591.705 kb on + strand, within Psyr_1405 at 1591.706 kb on - strand, within Psyr_1405 at 1591.761 kb on - strand, within Psyr_1405 at 1591.769 kb on - strand, within Psyr_1405 at 1591.769 kb on - strand, within Psyr_1405 at 1591.885 kb on + strand at 1591.885 kb on + strand at 1591.890 kb on + strand at 1591.890 kb on + strand at 1591.890 kb on + strand at 1591.890 kb on + strand at 1591.891 kb on - strand at 1591.891 kb on - strand at 1591.998 kb on + strand at 1592.029 kb on + strand at 1592.029 kb on + strand at 1592.029 kb on + strand at 1592.029 kb on + strand at 1592.029 kb on + strand at 1592.035 kb on + strand at 1592.035 kb on + strand at 1592.035 kb on + strand at 1592.035 kb on + strand at 1592.035 kb on + strand at 1592.035 kb on + strand at 1592.035 kb on + strand at 1592.035 kb on + strand at 1592.035 kb on + strand at 1592.035 kb on + strand at 1592.037 kb on + strand at 1592.037 kb on + strand at 1592.037 kb on + strand at 1592.037 kb on + strand at 1592.037 kb on + strand at 1592.037 kb on + strand at 1592.039 kb on + strand at 1592.039 kb on + strand at 1592.039 kb on + strand at 1592.039 kb on + strand at 1592.039 kb on + strand at 1592.039 kb on + strand at 1592.039 kb on + strand at 1592.112 kb on + strand at 1592.158 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 0.0625 mg/ml remove 1,589,914 + -1.3 1,589,914 + -0.9 1,589,915 - -1.1 1,589,915 - -2.4 1,589,915 - -3.2 1,589,915 - -1.6 1,590,028 - -2.5 1,590,036 + -3.6 1,590,037 - -1.5 1,590,083 + -2.7 1,590,084 - -0.7 1,590,084 - -1.3 1,590,145 - -0.9 1,590,182 - -1.0 1,590,200 + -3.8 1,590,209 + -1.8 1,590,210 - -3.5 1,590,213 + -2.8 1,590,306 + -2.1 1,590,306 + -2.6 1,590,306 + -1.3 1,590,306 + -4.2 1,590,371 + -0.5 1,590,371 + -2.3 1,590,371 + -3.3 1,590,372 - -1.0 1,590,372 - +1.1 1,590,372 - -2.0 1,590,372 - -0.5 1,590,415 - +0.3 1,590,437 + -2.5 1,590,500 + -1.0 1,590,501 - +0.9 1,590,503 + -0.7 1,590,503 + +0.7 1,590,503 + +0.9 1,590,504 - +0.1 1,590,504 - -1.5 1,590,504 - +0.4 1,590,504 - +0.3 1,590,550 + +0.1 1,590,551 - -0.4 1,590,641 + -0.5 1,590,641 + -0.2 1,590,806 + Psyr_1404 0.16 -0.9 1,590,806 + Psyr_1404 0.16 +1.4 1,590,806 + Psyr_1404 0.16 +2.0 1,590,806 + Psyr_1404 0.16 +0.5 1,590,806 + Psyr_1404 0.16 +0.2 1,590,806 + Psyr_1404 0.16 -0.2 1,590,806 + Psyr_1404 0.16 +0.1 1,590,806 + Psyr_1404 0.16 +0.3 1,590,806 + Psyr_1404 0.16 -0.8 1,590,806 + Psyr_1404 0.16 +1.1 1,590,806 + Psyr_1404 0.16 +1.2 1,590,806 + Psyr_1404 0.16 +0.1 1,590,806 + Psyr_1404 0.16 +0.1 1,590,806 + Psyr_1404 0.16 -0.5 1,590,807 - Psyr_1404 0.17 +0.7 1,590,807 - Psyr_1404 0.17 +1.1 1,590,807 - Psyr_1404 0.17 -0.2 1,590,807 - Psyr_1404 0.17 +0.2 1,590,807 - Psyr_1404 0.17 -0.3 1,590,807 - Psyr_1404 0.17 +1.1 1,590,807 - Psyr_1404 0.17 -0.4 1,590,807 - Psyr_1404 0.17 +0.8 1,590,807 - Psyr_1404 0.17 -0.8 1,590,807 - Psyr_1404 0.17 +0.2 1,590,893 + Psyr_1404 0.35 +0.6 1,590,893 + Psyr_1404 0.35 +0.0 1,590,894 - Psyr_1404 0.35 -0.5 1,590,894 - Psyr_1404 0.35 +1.1 1,590,894 - Psyr_1404 0.35 +0.4 1,590,894 - Psyr_1404 0.35 +0.4 1,590,894 - Psyr_1404 0.35 -0.2 1,590,894 - Psyr_1404 0.35 -0.5 1,590,969 - Psyr_1404 0.51 +0.2 1,590,978 - Psyr_1404 0.53 +0.6 1,591,030 + Psyr_1404 0.64 +0.1 1,591,031 - Psyr_1404 0.64 +0.3 1,591,031 - Psyr_1404 0.64 +0.8 1,591,031 - Psyr_1404 0.64 -0.1 1,591,072 + Psyr_1404 0.73 +0.4 1,591,081 + Psyr_1404 0.74 +0.3 1,591,081 + Psyr_1404 0.74 -0.5 1,591,081 + Psyr_1404 0.74 -0.3 1,591,082 - Psyr_1404 0.75 -0.5 1,591,085 - Psyr_1404 0.75 +0.5 1,591,199 + +0.4 1,591,200 - +0.8 1,591,200 - -0.9 1,591,266 - +0.4 1,591,281 + -0.4 1,591,282 - -0.4 1,591,383 + -0.3 1,591,468 + -0.1 1,591,470 + -0.2 1,591,485 - +2.3 1,591,572 + +0.0 1,591,572 + +3.2 1,591,573 - +0.3 1,591,599 - Psyr_1405 0.16 -0.1 1,591,630 - Psyr_1405 0.25 +0.2 1,591,705 + Psyr_1405 0.47 -0.5 1,591,706 - Psyr_1405 0.47 +0.9 1,591,761 - Psyr_1405 0.63 +0.7 1,591,769 - Psyr_1405 0.66 -3.0 1,591,769 - Psyr_1405 0.66 +0.2 1,591,885 + -0.6 1,591,885 + -0.4 1,591,890 + -0.4 1,591,890 + -1.4 1,591,890 + -0.1 1,591,890 + +0.7 1,591,891 - -0.0 1,591,891 - -1.5 1,591,998 + -1.3 1,592,029 + -0.5 1,592,029 + +0.7 1,592,029 + -0.4 1,592,029 + +0.4 1,592,029 + +2.3 1,592,035 + -0.5 1,592,035 + +1.1 1,592,035 + +0.5 1,592,035 + +0.7 1,592,035 + +0.9 1,592,035 + +0.5 1,592,035 + +0.2 1,592,035 + +0.1 1,592,035 + +2.7 1,592,035 + +0.6 1,592,037 + -0.5 1,592,037 + +1.7 1,592,037 + +0.7 1,592,037 + +0.0 1,592,037 + +0.1 1,592,037 + -0.9 1,592,039 + -0.5 1,592,039 + +0.2 1,592,039 + +0.3 1,592,039 + -0.3 1,592,039 + -0.9 1,592,039 + +0.6 1,592,039 + -0.5 1,592,112 + +3.0 1,592,158 + +0.9
Or see this region's nucleotide sequence