Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1352

Experiment: KB with Nitrofurantoin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1351 and Psyr_1352 are separated by 69 nucleotidesPsyr_1352 and Psyr_1353 are separated by 2 nucleotides Psyr_1351: Psyr_1351 - surface antigen (D15):Surface antigen variable number, at 1,530,836 to 1,533,211 _1351 Psyr_1352: Psyr_1352 - Outer membrane protein (OmpH-like), at 1,533,281 to 1,533,760 _1352 Psyr_1353: Psyr_1353 - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, at 1,533,763 to 1,534,818 _1353 Position (kb) 1533 1534Strain fitness (log2 ratio) -3 -2 -1 0 1at 1533.209 kb on + strandat 1533.713 kb on + strandat 1533.713 kb on + strandat 1533.713 kb on + strandat 1533.713 kb on + strandat 1533.758 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 0.0625 mg/ml
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1,533,209 + -0.3
1,533,713 + -2.1
1,533,713 + -2.9
1,533,713 + -2.1
1,533,713 + -2.3
1,533,758 + -1.8

Or see this region's nucleotide sequence