Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1166

Experiment: KB with Nitrofurantoin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1164 and Psyr_1165 are separated by 2 nucleotidesPsyr_1165 and Psyr_1166 are separated by 4 nucleotidesPsyr_1166 and Psyr_1167 are separated by 27 nucleotidesPsyr_1167 and Psyr_1168 overlap by 8 nucleotides Psyr_1164: Psyr_1164 - nucleoside ABC transporter ATP-binding protein, at 1,317,414 to 1,318,949 _1164 Psyr_1165: Psyr_1165 - Isochorismatase hydrolase, at 1,318,952 to 1,319,638 _1165 Psyr_1166: Psyr_1166 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase, at 1,319,643 to 1,320,659 _1166 Psyr_1167: Psyr_1167 - nucleoside ABC transporter membrane protein, at 1,320,687 to 1,321,607 _1167 Psyr_1168: Psyr_1168 - nucleoside ABC transporter membrane protein, at 1,321,600 to 1,322,709 _1168 Position (kb) 1319 1320 1321Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1318.693 kb on + strand, within Psyr_1164at 1318.693 kb on + strand, within Psyr_1164at 1318.693 kb on + strand, within Psyr_1164at 1318.694 kb on - strand, within Psyr_1164at 1318.814 kb on + strandat 1318.815 kb on - strandat 1318.815 kb on - strandat 1318.909 kb on + strandat 1318.909 kb on + strandat 1318.910 kb on - strandat 1319.624 kb on - strandat 1319.624 kb on - strandat 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.776 kb on + strand, within Psyr_1166at 1319.777 kb on - strand, within Psyr_1166at 1319.777 kb on - strand, within Psyr_1166at 1319.777 kb on - strand, within Psyr_1166at 1319.777 kb on - strand, within Psyr_1166at 1319.777 kb on - strand, within Psyr_1166at 1319.777 kb on - strand, within Psyr_1166at 1319.777 kb on - strand, within Psyr_1166at 1319.777 kb on - strand, within Psyr_1166at 1319.819 kb on - strand, within Psyr_1166at 1319.819 kb on - strand, within Psyr_1166at 1319.840 kb on - strand, within Psyr_1166at 1319.840 kb on - strand, within Psyr_1166at 1320.095 kb on - strand, within Psyr_1166at 1320.130 kb on + strand, within Psyr_1166at 1320.131 kb on - strand, within Psyr_1166at 1320.221 kb on + strand, within Psyr_1166at 1320.280 kb on + strand, within Psyr_1166at 1320.280 kb on + strand, within Psyr_1166at 1320.280 kb on + strand, within Psyr_1166at 1320.280 kb on + strand, within Psyr_1166at 1320.281 kb on - strand, within Psyr_1166at 1320.281 kb on - strand, within Psyr_1166at 1320.281 kb on - strand, within Psyr_1166at 1320.476 kb on - strand, within Psyr_1166at 1320.751 kb on + strandat 1320.751 kb on + strandat 1320.751 kb on + strandat 1320.751 kb on + strandat 1320.752 kb on - strandat 1320.752 kb on - strandat 1320.752 kb on - strandat 1320.752 kb on - strandat 1320.775 kb on + strandat 1320.776 kb on - strandat 1320.776 kb on - strandat 1320.983 kb on - strand, within Psyr_1167at 1320.983 kb on - strand, within Psyr_1167at 1320.983 kb on - strand, within Psyr_1167

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 0.0625 mg/ml
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1,318,693 + Psyr_1164 0.83 +0.6
1,318,693 + Psyr_1164 0.83 +0.9
1,318,693 + Psyr_1164 0.83 -0.0
1,318,694 - Psyr_1164 0.83 -0.8
1,318,814 + +1.7
1,318,815 - +0.6
1,318,815 - +0.1
1,318,909 + +0.1
1,318,909 + -1.3
1,318,910 - -3.2
1,319,624 - -1.1
1,319,624 - +3.7
1,319,776 + Psyr_1166 0.13 +0.4
1,319,776 + Psyr_1166 0.13 +1.4
1,319,776 + Psyr_1166 0.13 -0.4
1,319,776 + Psyr_1166 0.13 +0.2
1,319,776 + Psyr_1166 0.13 +1.7
1,319,776 + Psyr_1166 0.13 +0.2
1,319,776 + Psyr_1166 0.13 +0.1
1,319,776 + Psyr_1166 0.13 -0.1
1,319,776 + Psyr_1166 0.13 +0.1
1,319,776 + Psyr_1166 0.13 +0.3
1,319,776 + Psyr_1166 0.13 +0.0
1,319,776 + Psyr_1166 0.13 +0.2
1,319,777 - Psyr_1166 0.13 -1.3
1,319,777 - Psyr_1166 0.13 -0.3
1,319,777 - Psyr_1166 0.13 +0.6
1,319,777 - Psyr_1166 0.13 +0.5
1,319,777 - Psyr_1166 0.13 +0.3
1,319,777 - Psyr_1166 0.13 -2.2
1,319,777 - Psyr_1166 0.13 +1.1
1,319,777 - Psyr_1166 0.13 +0.1
1,319,819 - Psyr_1166 0.17 -0.2
1,319,819 - Psyr_1166 0.17 +1.1
1,319,840 - Psyr_1166 0.19 -0.6
1,319,840 - Psyr_1166 0.19 -0.6
1,320,095 - Psyr_1166 0.44 -0.1
1,320,130 + Psyr_1166 0.48 +0.4
1,320,131 - Psyr_1166 0.48 +0.4
1,320,221 + Psyr_1166 0.57 -0.4
1,320,280 + Psyr_1166 0.63 -0.1
1,320,280 + Psyr_1166 0.63 +1.3
1,320,280 + Psyr_1166 0.63 -0.3
1,320,280 + Psyr_1166 0.63 +0.3
1,320,281 - Psyr_1166 0.63 +0.7
1,320,281 - Psyr_1166 0.63 +0.0
1,320,281 - Psyr_1166 0.63 +0.4
1,320,476 - Psyr_1166 0.82 +0.5
1,320,751 + +0.2
1,320,751 + -0.3
1,320,751 + -1.0
1,320,751 + -1.0
1,320,752 - +0.6
1,320,752 - -0.4
1,320,752 - +1.0
1,320,752 - -0.3
1,320,775 + +0.1
1,320,776 - +0.7
1,320,776 - -0.2
1,320,983 - Psyr_1167 0.32 -0.1
1,320,983 - Psyr_1167 0.32 -2.1
1,320,983 - Psyr_1167 0.32 -0.6

Or see this region's nucleotide sequence