Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1069

Experiment: KB with Nitrofurantoin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1067 and Psyr_1068 overlap by 4 nucleotidesPsyr_1068 and Psyr_1069 are separated by 2 nucleotidesPsyr_1069 and Psyr_1070 are separated by 3 nucleotides Psyr_1067: Psyr_1067 - GTP cyclohydrolase subunit MoaC, at 1,211,047 to 1,211,532 _1067 Psyr_1068: Psyr_1068 - molybdopterin synthase subunit MoaD, at 1,211,529 to 1,211,774 _1068 Psyr_1069: Psyr_1069 - molybdopterin synthase subunit MoaE, at 1,211,777 to 1,212,226 _1069 Psyr_1070: Psyr_1070 - Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, at 1,212,230 to 1,213,687 _1070 Position (kb) 1211 1212 1213Strain fitness (log2 ratio) -2 -1 0 1 2at 1210.798 kb on - strandat 1210.834 kb on + strandat 1210.835 kb on - strandat 1210.859 kb on + strandat 1210.859 kb on + strandat 1210.859 kb on + strandat 1210.859 kb on + strandat 1210.859 kb on + strandat 1210.859 kb on + strandat 1210.860 kb on - strandat 1210.860 kb on - strandat 1210.860 kb on - strandat 1210.861 kb on + strandat 1210.861 kb on + strandat 1210.873 kb on + strandat 1210.890 kb on + strandat 1210.890 kb on + strandat 1210.890 kb on + strandat 1210.890 kb on + strandat 1210.891 kb on - strandat 1210.891 kb on - strandat 1210.891 kb on - strandat 1210.891 kb on - strandat 1210.921 kb on - strandat 1210.969 kb on + strandat 1210.970 kb on - strandat 1210.970 kb on - strandat 1210.994 kb on + strandat 1210.994 kb on + strandat 1210.994 kb on + strandat 1210.994 kb on + strandat 1210.994 kb on + strandat 1210.994 kb on + strandat 1210.995 kb on - strandat 1211.040 kb on + strandat 1211.083 kb on - strandat 1211.416 kb on + strand, within Psyr_1067at 1211.417 kb on - strand, within Psyr_1067at 1211.417 kb on - strand, within Psyr_1067at 1211.417 kb on - strand, within Psyr_1067at 1211.417 kb on - strand, within Psyr_1067at 1211.421 kb on + strand, within Psyr_1067at 1211.421 kb on + strand, within Psyr_1067at 1211.421 kb on + strand, within Psyr_1067at 1211.422 kb on - strand, within Psyr_1067at 1211.422 kb on - strand, within Psyr_1067at 1211.547 kb on + strandat 1211.548 kb on - strandat 1211.548 kb on - strandat 1211.879 kb on + strand, within Psyr_1069at 1211.880 kb on - strand, within Psyr_1069at 1212.012 kb on + strand, within Psyr_1069at 1212.012 kb on + strand, within Psyr_1069at 1212.120 kb on - strand, within Psyr_1069at 1212.120 kb on - strand, within Psyr_1069at 1212.120 kb on - strand, within Psyr_1069at 1212.224 kb on + strandat 1212.224 kb on + strandat 1212.224 kb on + strandat 1212.224 kb on + strandat 1212.225 kb on - strandat 1212.225 kb on - strandat 1212.225 kb on - strandat 1212.225 kb on - strandat 1212.225 kb on - strandat 1212.225 kb on - strandat 1212.225 kb on - strandat 1212.327 kb on + strandat 1212.328 kb on - strandat 1212.405 kb on + strand, within Psyr_1070at 1212.405 kb on + strand, within Psyr_1070at 1212.405 kb on + strand, within Psyr_1070at 1212.682 kb on - strand, within Psyr_1070at 1212.693 kb on + strand, within Psyr_1070at 1212.693 kb on + strand, within Psyr_1070at 1212.693 kb on + strand, within Psyr_1070at 1212.693 kb on + strand, within Psyr_1070at 1212.693 kb on + strand, within Psyr_1070at 1212.717 kb on + strand, within Psyr_1070at 1212.717 kb on + strand, within Psyr_1070at 1212.717 kb on + strand, within Psyr_1070at 1212.717 kb on + strand, within Psyr_1070at 1212.717 kb on + strand, within Psyr_1070at 1212.717 kb on + strand, within Psyr_1070at 1212.717 kb on + strand, within Psyr_1070at 1212.717 kb on + strand, within Psyr_1070at 1212.717 kb on + strand, within Psyr_1070at 1212.717 kb on + strand, within Psyr_1070at 1212.718 kb on - strand, within Psyr_1070at 1212.718 kb on - strand, within Psyr_1070at 1212.718 kb on - strand, within Psyr_1070at 1212.718 kb on - strand, within Psyr_1070at 1212.718 kb on - strand, within Psyr_1070at 1212.718 kb on - strand, within Psyr_1070at 1212.718 kb on - strand, within Psyr_1070at 1212.718 kb on - strand, within Psyr_1070at 1212.718 kb on - strand, within Psyr_1070at 1212.718 kb on - strand, within Psyr_1070at 1212.718 kb on - strand, within Psyr_1070at 1212.721 kb on + strand, within Psyr_1070at 1212.721 kb on + strand, within Psyr_1070at 1212.721 kb on + strand, within Psyr_1070at 1212.721 kb on + strand, within Psyr_1070at 1212.721 kb on + strand, within Psyr_1070at 1212.721 kb on + strand, within Psyr_1070at 1212.721 kb on + strand, within Psyr_1070at 1212.721 kb on + strand, within Psyr_1070at 1212.721 kb on + strand, within Psyr_1070at 1212.721 kb on + strand, within Psyr_1070at 1212.721 kb on + strand, within Psyr_1070at 1212.721 kb on + strand, within Psyr_1070at 1212.722 kb on - strand, within Psyr_1070at 1212.722 kb on - strand, within Psyr_1070at 1212.722 kb on - strand, within Psyr_1070at 1212.722 kb on - strand, within Psyr_1070at 1212.722 kb on - strand, within Psyr_1070at 1212.809 kb on + strand, within Psyr_1070at 1212.809 kb on + strand, within Psyr_1070at 1212.809 kb on + strand, within Psyr_1070at 1212.809 kb on + strand, within Psyr_1070at 1212.810 kb on - strand, within Psyr_1070at 1212.810 kb on - strand, within Psyr_1070at 1212.810 kb on - strand, within Psyr_1070at 1212.810 kb on - strand, within Psyr_1070at 1213.098 kb on + strand, within Psyr_1070at 1213.098 kb on + strand, within Psyr_1070at 1213.098 kb on + strand, within Psyr_1070at 1213.098 kb on + strand, within Psyr_1070at 1213.098 kb on + strand, within Psyr_1070at 1213.098 kb on + strand, within Psyr_1070at 1213.099 kb on - strand, within Psyr_1070at 1213.099 kb on - strand, within Psyr_1070at 1213.133 kb on + strand, within Psyr_1070at 1213.185 kb on + strand, within Psyr_1070at 1213.185 kb on + strand, within Psyr_1070at 1213.185 kb on + strand, within Psyr_1070at 1213.185 kb on + strand, within Psyr_1070at 1213.186 kb on - strand, within Psyr_1070

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 0.0625 mg/ml
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1,210,798 - -0.5
1,210,834 + +0.7
1,210,835 - -1.5
1,210,859 + +0.7
1,210,859 + -0.7
1,210,859 + +1.3
1,210,859 + +0.1
1,210,859 + -0.4
1,210,859 + -0.1
1,210,860 - -1.1
1,210,860 - +0.2
1,210,860 - -0.2
1,210,861 + +0.8
1,210,861 + -0.2
1,210,873 + -0.5
1,210,890 + -0.3
1,210,890 + -0.4
1,210,890 + +0.1
1,210,890 + -0.2
1,210,891 - -0.7
1,210,891 - -0.2
1,210,891 - +0.6
1,210,891 - -0.4
1,210,921 - -0.6
1,210,969 + +0.7
1,210,970 - +0.6
1,210,970 - +0.2
1,210,994 + +1.0
1,210,994 + -1.1
1,210,994 + +0.7
1,210,994 + -0.2
1,210,994 + -0.5
1,210,994 + -0.1
1,210,995 - +1.2
1,211,040 + -0.4
1,211,083 - +0.1
1,211,416 + Psyr_1067 0.76 -0.8
1,211,417 - Psyr_1067 0.76 +1.1
1,211,417 - Psyr_1067 0.76 -0.6
1,211,417 - Psyr_1067 0.76 -0.4
1,211,417 - Psyr_1067 0.76 -0.1
1,211,421 + Psyr_1067 0.77 +0.7
1,211,421 + Psyr_1067 0.77 -1.6
1,211,421 + Psyr_1067 0.77 -1.0
1,211,422 - Psyr_1067 0.77 -0.4
1,211,422 - Psyr_1067 0.77 +0.6
1,211,547 + +0.3
1,211,548 - -0.4
1,211,548 - +1.2
1,211,879 + Psyr_1069 0.23 +0.2
1,211,880 - Psyr_1069 0.23 +1.2
1,212,012 + Psyr_1069 0.52 +0.3
1,212,012 + Psyr_1069 0.52 +1.5
1,212,120 - Psyr_1069 0.76 +0.7
1,212,120 - Psyr_1069 0.76 -1.0
1,212,120 - Psyr_1069 0.76 -1.1
1,212,224 + -0.3
1,212,224 + +1.0
1,212,224 + +0.2
1,212,224 + -0.9
1,212,225 - +1.7
1,212,225 - +0.5
1,212,225 - -0.7
1,212,225 - -0.0
1,212,225 - -0.3
1,212,225 - +0.6
1,212,225 - -0.1
1,212,327 + -2.0
1,212,328 - -0.9
1,212,405 + Psyr_1070 0.12 -1.7
1,212,405 + Psyr_1070 0.12 -0.5
1,212,405 + Psyr_1070 0.12 -0.4
1,212,682 - Psyr_1070 0.31 +0.3
1,212,693 + Psyr_1070 0.32 +0.0
1,212,693 + Psyr_1070 0.32 +0.2
1,212,693 + Psyr_1070 0.32 +0.6
1,212,693 + Psyr_1070 0.32 -0.2
1,212,693 + Psyr_1070 0.32 +1.5
1,212,717 + Psyr_1070 0.33 +0.0
1,212,717 + Psyr_1070 0.33 -0.4
1,212,717 + Psyr_1070 0.33 -0.7
1,212,717 + Psyr_1070 0.33 -0.0
1,212,717 + Psyr_1070 0.33 +0.7
1,212,717 + Psyr_1070 0.33 +0.2
1,212,717 + Psyr_1070 0.33 +0.5
1,212,717 + Psyr_1070 0.33 +0.6
1,212,717 + Psyr_1070 0.33 -0.5
1,212,717 + Psyr_1070 0.33 +1.2
1,212,718 - Psyr_1070 0.33 -2.1
1,212,718 - Psyr_1070 0.33 -0.2
1,212,718 - Psyr_1070 0.33 +1.2
1,212,718 - Psyr_1070 0.33 -0.2
1,212,718 - Psyr_1070 0.33 -0.4
1,212,718 - Psyr_1070 0.33 -1.1
1,212,718 - Psyr_1070 0.33 -0.5
1,212,718 - Psyr_1070 0.33 -0.4
1,212,718 - Psyr_1070 0.33 -0.7
1,212,718 - Psyr_1070 0.33 -0.2
1,212,718 - Psyr_1070 0.33 +0.1
1,212,721 + Psyr_1070 0.34 +0.9
1,212,721 + Psyr_1070 0.34 +0.3
1,212,721 + Psyr_1070 0.34 -0.8
1,212,721 + Psyr_1070 0.34 +0.2
1,212,721 + Psyr_1070 0.34 -0.5
1,212,721 + Psyr_1070 0.34 +1.7
1,212,721 + Psyr_1070 0.34 -0.0
1,212,721 + Psyr_1070 0.34 +1.9
1,212,721 + Psyr_1070 0.34 -1.3
1,212,721 + Psyr_1070 0.34 +1.0
1,212,721 + Psyr_1070 0.34 -0.9
1,212,721 + Psyr_1070 0.34 +1.2
1,212,722 - Psyr_1070 0.34 +0.2
1,212,722 - Psyr_1070 0.34 -0.9
1,212,722 - Psyr_1070 0.34 +0.4
1,212,722 - Psyr_1070 0.34 +0.2
1,212,722 - Psyr_1070 0.34 -0.9
1,212,809 + Psyr_1070 0.40 -1.0
1,212,809 + Psyr_1070 0.40 -0.9
1,212,809 + Psyr_1070 0.40 -0.5
1,212,809 + Psyr_1070 0.40 +0.1
1,212,810 - Psyr_1070 0.40 -0.4
1,212,810 - Psyr_1070 0.40 +0.7
1,212,810 - Psyr_1070 0.40 +0.4
1,212,810 - Psyr_1070 0.40 -0.4
1,213,098 + Psyr_1070 0.60 +0.2
1,213,098 + Psyr_1070 0.60 +0.6
1,213,098 + Psyr_1070 0.60 +0.7
1,213,098 + Psyr_1070 0.60 -0.3
1,213,098 + Psyr_1070 0.60 -1.4
1,213,098 + Psyr_1070 0.60 +2.7
1,213,099 - Psyr_1070 0.60 -0.4
1,213,099 - Psyr_1070 0.60 -1.9
1,213,133 + Psyr_1070 0.62 -1.3
1,213,185 + Psyr_1070 0.66 -1.0
1,213,185 + Psyr_1070 0.66 -0.1
1,213,185 + Psyr_1070 0.66 -1.3
1,213,185 + Psyr_1070 0.66 +0.9
1,213,186 - Psyr_1070 0.66 +0.4

Or see this region's nucleotide sequence