Experiment: KB with Nitrofurantoin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0704 and Psyr_0705 are separated by 25 nucleotides Psyr_0705 and Psyr_0706 are separated by 468 nucleotides
Psyr_0704: Psyr_0704 - glutamate 5-kinase, at 806,935 to 808,053
_0704
Psyr_0705: Psyr_0705 - CreA, at 808,079 to 808,549
_0705
Psyr_0706: Psyr_0706 - Acyltransferase 3, at 809,018 to 810,079
_0706
Position (kb) 808
809 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 807.237 kb on + strand, within Psyr_0704 at 807.237 kb on + strand, within Psyr_0704 at 807.238 kb on - strand, within Psyr_0704 at 807.511 kb on + strand, within Psyr_0704 at 807.511 kb on + strand, within Psyr_0704 at 807.778 kb on - strand, within Psyr_0704 at 807.891 kb on - strand, within Psyr_0704 at 807.891 kb on - strand, within Psyr_0704 at 807.933 kb on + strand, within Psyr_0704 at 807.934 kb on - strand, within Psyr_0704 at 807.937 kb on + strand, within Psyr_0704 at 807.937 kb on + strand, within Psyr_0704 at 807.937 kb on + strand, within Psyr_0704 at 807.937 kb on + strand, within Psyr_0704 at 807.937 kb on + strand, within Psyr_0704 at 807.937 kb on + strand, within Psyr_0704 at 807.937 kb on + strand, within Psyr_0704 at 807.937 kb on + strand, within Psyr_0704 at 807.937 kb on + strand, within Psyr_0704 at 807.938 kb on - strand, within Psyr_0704 at 807.938 kb on - strand, within Psyr_0704 at 807.938 kb on - strand, within Psyr_0704 at 807.938 kb on - strand, within Psyr_0704 at 808.003 kb on + strand at 808.003 kb on + strand at 808.003 kb on + strand at 808.003 kb on + strand at 808.003 kb on + strand at 808.003 kb on + strand at 808.003 kb on + strand at 808.004 kb on - strand at 808.004 kb on - strand at 808.004 kb on - strand at 808.004 kb on - strand at 808.004 kb on - strand at 808.004 kb on - strand at 808.004 kb on - strand at 808.098 kb on + strand at 808.241 kb on + strand, within Psyr_0705 at 808.242 kb on - strand, within Psyr_0705 at 808.387 kb on + strand, within Psyr_0705 at 808.387 kb on + strand, within Psyr_0705 at 808.387 kb on + strand, within Psyr_0705 at 808.387 kb on + strand, within Psyr_0705 at 808.387 kb on + strand, within Psyr_0705 at 808.388 kb on - strand, within Psyr_0705 at 808.388 kb on - strand, within Psyr_0705 at 808.388 kb on - strand, within Psyr_0705 at 808.454 kb on + strand, within Psyr_0705 at 808.454 kb on + strand, within Psyr_0705 at 808.454 kb on + strand, within Psyr_0705 at 808.454 kb on + strand, within Psyr_0705 at 808.455 kb on - strand, within Psyr_0705 at 808.463 kb on + strand, within Psyr_0705 at 808.463 kb on + strand, within Psyr_0705 at 808.464 kb on - strand, within Psyr_0705 at 808.637 kb on + strand at 808.637 kb on + strand at 808.637 kb on + strand at 808.637 kb on + strand at 808.637 kb on + strand at 808.638 kb on - strand at 808.638 kb on - strand at 808.638 kb on - strand at 808.638 kb on - strand at 808.638 kb on - strand at 808.638 kb on - strand at 808.656 kb on - strand at 808.676 kb on - strand at 808.753 kb on + strand at 808.819 kb on + strand at 808.819 kb on + strand at 808.819 kb on + strand at 808.820 kb on - strand at 808.820 kb on - strand at 808.858 kb on - strand at 808.877 kb on - strand at 808.947 kb on + strand at 808.950 kb on + strand at 808.950 kb on + strand at 808.950 kb on + strand at 808.951 kb on - strand at 808.951 kb on - strand at 808.951 kb on - strand at 808.954 kb on + strand at 808.955 kb on - strand at 808.977 kb on + strand at 808.998 kb on + strand at 809.039 kb on + strand at 809.061 kb on + strand at 809.062 kb on - strand at 809.080 kb on + strand at 809.116 kb on + strand at 809.116 kb on + strand at 809.116 kb on + strand at 809.117 kb on - strand at 809.118 kb on + strand at 809.118 kb on + strand at 809.119 kb on - strand at 809.155 kb on - strand, within Psyr_0706 at 809.168 kb on - strand, within Psyr_0706 at 809.183 kb on + strand, within Psyr_0706 at 809.233 kb on + strand, within Psyr_0706 at 809.233 kb on + strand, within Psyr_0706 at 809.234 kb on - strand, within Psyr_0706 at 809.234 kb on - strand, within Psyr_0706 at 809.235 kb on + strand, within Psyr_0706 at 809.236 kb on - strand, within Psyr_0706 at 809.311 kb on - strand, within Psyr_0706 at 809.322 kb on - strand, within Psyr_0706 at 809.322 kb on - strand, within Psyr_0706 at 809.339 kb on + strand, within Psyr_0706 at 809.339 kb on + strand, within Psyr_0706 at 809.339 kb on + strand, within Psyr_0706 at 809.340 kb on - strand, within Psyr_0706 at 809.340 kb on - strand, within Psyr_0706 at 809.342 kb on - strand, within Psyr_0706 at 809.342 kb on - strand, within Psyr_0706 at 809.399 kb on + strand, within Psyr_0706 at 809.399 kb on + strand, within Psyr_0706 at 809.399 kb on + strand, within Psyr_0706 at 809.400 kb on - strand, within Psyr_0706 at 809.400 kb on - strand, within Psyr_0706 at 809.400 kb on - strand, within Psyr_0706 at 809.400 kb on - strand, within Psyr_0706 at 809.400 kb on - strand, within Psyr_0706 at 809.414 kb on + strand, within Psyr_0706 at 809.415 kb on - strand, within Psyr_0706 at 809.415 kb on - strand, within Psyr_0706 at 809.415 kb on - strand, within Psyr_0706 at 809.421 kb on + strand, within Psyr_0706 at 809.421 kb on + strand, within Psyr_0706 at 809.421 kb on + strand, within Psyr_0706 at 809.421 kb on + strand, within Psyr_0706 at 809.422 kb on - strand, within Psyr_0706 at 809.422 kb on - strand, within Psyr_0706 at 809.422 kb on - strand, within Psyr_0706 at 809.462 kb on + strand, within Psyr_0706 at 809.496 kb on + strand, within Psyr_0706 at 809.513 kb on + strand, within Psyr_0706 at 809.514 kb on - strand, within Psyr_0706 at 809.514 kb on - strand, within Psyr_0706 at 809.514 kb on - strand, within Psyr_0706 at 809.514 kb on - strand, within Psyr_0706
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 0.0625 mg/ml remove 807,237 + Psyr_0704 0.27 -0.5 807,237 + Psyr_0704 0.27 +2.4 807,238 - Psyr_0704 0.27 -0.1 807,511 + Psyr_0704 0.51 -2.4 807,511 + Psyr_0704 0.51 +0.4 807,778 - Psyr_0704 0.75 -1.1 807,891 - Psyr_0704 0.85 +0.2 807,891 - Psyr_0704 0.85 -1.9 807,933 + Psyr_0704 0.89 +0.4 807,934 - Psyr_0704 0.89 +0.6 807,937 + Psyr_0704 0.90 +0.1 807,937 + Psyr_0704 0.90 -1.9 807,937 + Psyr_0704 0.90 -0.4 807,937 + Psyr_0704 0.90 +0.3 807,937 + Psyr_0704 0.90 +1.1 807,937 + Psyr_0704 0.90 -0.8 807,937 + Psyr_0704 0.90 +1.6 807,937 + Psyr_0704 0.90 +0.4 807,937 + Psyr_0704 0.90 -0.4 807,938 - Psyr_0704 0.90 +0.6 807,938 - Psyr_0704 0.90 +0.1 807,938 - Psyr_0704 0.90 +0.1 807,938 - Psyr_0704 0.90 +1.0 808,003 + -0.7 808,003 + +0.2 808,003 + -0.2 808,003 + +0.6 808,003 + -1.7 808,003 + +0.4 808,003 + -0.3 808,004 - +0.5 808,004 - -0.0 808,004 - +1.0 808,004 - +0.2 808,004 - -1.6 808,004 - -0.4 808,004 - -1.0 808,098 + -0.5 808,241 + Psyr_0705 0.34 -0.4 808,242 - Psyr_0705 0.35 +0.6 808,387 + Psyr_0705 0.65 -0.2 808,387 + Psyr_0705 0.65 -0.9 808,387 + Psyr_0705 0.65 +0.2 808,387 + Psyr_0705 0.65 -0.2 808,387 + Psyr_0705 0.65 -0.4 808,388 - Psyr_0705 0.66 -0.9 808,388 - Psyr_0705 0.66 +1.0 808,388 - Psyr_0705 0.66 +0.1 808,454 + Psyr_0705 0.80 +0.1 808,454 + Psyr_0705 0.80 -2.5 808,454 + Psyr_0705 0.80 -1.4 808,454 + Psyr_0705 0.80 +0.3 808,455 - Psyr_0705 0.80 -0.5 808,463 + Psyr_0705 0.82 -0.0 808,463 + Psyr_0705 0.82 +0.6 808,464 - Psyr_0705 0.82 -1.0 808,637 + +0.3 808,637 + +0.1 808,637 + -0.1 808,637 + +0.8 808,637 + +0.1 808,638 - +0.6 808,638 - -0.1 808,638 - -0.0 808,638 - +0.1 808,638 - +0.3 808,638 - -2.9 808,656 - -1.3 808,676 - +0.6 808,753 + -1.4 808,819 + -0.7 808,819 + -0.2 808,819 + -0.9 808,820 - -0.1 808,820 - +0.6 808,858 - +0.3 808,877 - -0.9 808,947 + -0.2 808,950 + -1.2 808,950 + +0.5 808,950 + -1.8 808,951 - -1.7 808,951 - -0.9 808,951 - -0.4 808,954 + -1.7 808,955 - +0.1 808,977 + +0.1 808,998 + +0.8 809,039 + -0.2 809,061 + -0.5 809,062 - -0.1 809,080 + +1.6 809,116 + -0.0 809,116 + -1.1 809,116 + -0.0 809,117 - +0.6 809,118 + -0.1 809,118 + -3.1 809,119 - -0.5 809,155 - Psyr_0706 0.13 +0.1 809,168 - Psyr_0706 0.14 -1.5 809,183 + Psyr_0706 0.16 -0.7 809,233 + Psyr_0706 0.20 -0.6 809,233 + Psyr_0706 0.20 +0.5 809,234 - Psyr_0706 0.20 -0.6 809,234 - Psyr_0706 0.20 +0.1 809,235 + Psyr_0706 0.20 +0.3 809,236 - Psyr_0706 0.21 +1.6 809,311 - Psyr_0706 0.28 -2.2 809,322 - Psyr_0706 0.29 -1.7 809,322 - Psyr_0706 0.29 +0.3 809,339 + Psyr_0706 0.30 +1.2 809,339 + Psyr_0706 0.30 -1.5 809,339 + Psyr_0706 0.30 -0.8 809,340 - Psyr_0706 0.30 -0.4 809,340 - Psyr_0706 0.30 +1.0 809,342 - Psyr_0706 0.31 +1.1 809,342 - Psyr_0706 0.31 -1.8 809,399 + Psyr_0706 0.36 -1.2 809,399 + Psyr_0706 0.36 -0.4 809,399 + Psyr_0706 0.36 +1.2 809,400 - Psyr_0706 0.36 +0.2 809,400 - Psyr_0706 0.36 +1.1 809,400 - Psyr_0706 0.36 +1.6 809,400 - Psyr_0706 0.36 -0.9 809,400 - Psyr_0706 0.36 -0.4 809,414 + Psyr_0706 0.37 -0.1 809,415 - Psyr_0706 0.37 -0.2 809,415 - Psyr_0706 0.37 +0.4 809,415 - Psyr_0706 0.37 -0.4 809,421 + Psyr_0706 0.38 +0.1 809,421 + Psyr_0706 0.38 -1.1 809,421 + Psyr_0706 0.38 +0.2 809,421 + Psyr_0706 0.38 -1.9 809,422 - Psyr_0706 0.38 -0.6 809,422 - Psyr_0706 0.38 +3.2 809,422 - Psyr_0706 0.38 +0.2 809,462 + Psyr_0706 0.42 -0.6 809,496 + Psyr_0706 0.45 -1.8 809,513 + Psyr_0706 0.47 -0.1 809,514 - Psyr_0706 0.47 -0.4 809,514 - Psyr_0706 0.47 +0.1 809,514 - Psyr_0706 0.47 +0.6 809,514 - Psyr_0706 0.47 +0.1
Or see this region's nucleotide sequence