Experiment: KB with Nitrofurantoin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0283 and Psyr_0284 are separated by 245 nucleotides Psyr_0284 and Psyr_0285 are separated by 69 nucleotides Psyr_0285 and Psyr_0286 are separated by 247 nucleotides
Psyr_0283: Psyr_0283 - NLPA lipoprotein, at 301,667 to 302,440
_0283
Psyr_0284: Psyr_0284 - Electron transport protein SCO1/SenC, at 302,686 to 303,318
_0284
Psyr_0285: Psyr_0285 - Cytochrome c oxidase assembly protein CtaG/Cox11, at 303,388 to 303,879
_0285
Psyr_0286: Psyr_0286 - conserved hypothetical protein, at 304,127 to 304,777
_0286
Position (kb) 303
304 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 302.411 kb on + strand at 302.412 kb on - strand at 302.412 kb on - strand at 302.412 kb on - strand at 302.522 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.546 kb on + strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.547 kb on - strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.550 kb on + strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.551 kb on - strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.552 kb on + strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.553 kb on - strand at 302.681 kb on - strand at 302.681 kb on - strand at 302.681 kb on - strand at 302.681 kb on - strand at 302.814 kb on - strand, within Psyr_0284 at 302.877 kb on + strand, within Psyr_0284 at 302.906 kb on + strand, within Psyr_0284 at 302.906 kb on + strand, within Psyr_0284 at 302.907 kb on - strand, within Psyr_0284 at 302.907 kb on - strand, within Psyr_0284 at 302.907 kb on - strand, within Psyr_0284 at 302.931 kb on - strand, within Psyr_0284 at 302.931 kb on - strand, within Psyr_0284 at 303.077 kb on + strand, within Psyr_0284 at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.365 kb on + strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.366 kb on - strand at 303.367 kb on + strand at 303.383 kb on + strand at 303.384 kb on - strand at 303.389 kb on + strand at 303.390 kb on - strand at 303.414 kb on + strand at 303.414 kb on + strand at 303.414 kb on + strand at 303.414 kb on + strand at 303.414 kb on + strand at 303.415 kb on - strand at 303.417 kb on - strand at 303.417 kb on - strand at 303.417 kb on - strand at 303.436 kb on + strand at 303.436 kb on + strand at 303.437 kb on - strand at 303.437 kb on - strand at 303.437 kb on - strand at 303.678 kb on - strand, within Psyr_0285 at 303.785 kb on + strand, within Psyr_0285 at 303.786 kb on - strand, within Psyr_0285 at 303.812 kb on - strand, within Psyr_0285 at 303.826 kb on + strand, within Psyr_0285 at 303.827 kb on - strand, within Psyr_0285 at 303.827 kb on - strand, within Psyr_0285 at 303.827 kb on - strand, within Psyr_0285 at 303.827 kb on - strand, within Psyr_0285 at 303.827 kb on - strand, within Psyr_0285 at 303.829 kb on + strand, within Psyr_0285 at 303.829 kb on + strand, within Psyr_0285 at 303.829 kb on + strand, within Psyr_0285 at 303.829 kb on + strand, within Psyr_0285 at 303.830 kb on - strand at 303.830 kb on - strand at 303.830 kb on - strand at 303.830 kb on - strand at 303.830 kb on - strand at 303.897 kb on - strand at 303.897 kb on - strand at 303.997 kb on + strand at 303.998 kb on - strand at 304.030 kb on - strand at 304.053 kb on + strand at 304.057 kb on + strand at 304.057 kb on + strand at 304.057 kb on + strand at 304.067 kb on - strand at 304.071 kb on + strand at 304.072 kb on - strand at 304.155 kb on + strand at 304.156 kb on - strand at 304.156 kb on - strand at 304.156 kb on - strand at 304.156 kb on - strand at 304.161 kb on + strand at 304.161 kb on + strand at 304.161 kb on + strand at 304.292 kb on + strand, within Psyr_0286 at 304.293 kb on - strand, within Psyr_0286 at 304.293 kb on - strand, within Psyr_0286 at 304.293 kb on - strand, within Psyr_0286 at 304.365 kb on + strand, within Psyr_0286 at 304.366 kb on - strand, within Psyr_0286 at 304.460 kb on + strand, within Psyr_0286 at 304.460 kb on + strand, within Psyr_0286 at 304.461 kb on - strand, within Psyr_0286 at 304.461 kb on - strand, within Psyr_0286 at 304.461 kb on - strand, within Psyr_0286 at 304.499 kb on + strand, within Psyr_0286 at 304.499 kb on + strand, within Psyr_0286 at 304.499 kb on + strand, within Psyr_0286 at 304.499 kb on + strand, within Psyr_0286 at 304.499 kb on + strand, within Psyr_0286 at 304.499 kb on + strand, within Psyr_0286 at 304.499 kb on + strand, within Psyr_0286 at 304.500 kb on - strand, within Psyr_0286 at 304.500 kb on - strand, within Psyr_0286 at 304.500 kb on - strand, within Psyr_0286 at 304.500 kb on - strand, within Psyr_0286 at 304.500 kb on - strand, within Psyr_0286 at 304.537 kb on + strand, within Psyr_0286 at 304.840 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 0.0625 mg/ml remove 302,411 + +1.1 302,412 - -0.1 302,412 - -0.5 302,412 - +0.3 302,522 + -0.3 302,546 + +0.1 302,546 + +0.3 302,546 + +1.2 302,546 + -0.6 302,546 + -1.8 302,546 + -0.0 302,546 + -0.1 302,546 + -0.7 302,546 + -0.5 302,546 + +0.7 302,547 - -0.4 302,547 - -0.6 302,547 - +0.6 302,547 - +0.3 302,547 - +0.7 302,550 + +1.0 302,550 + -1.2 302,550 + +0.2 302,550 + -0.5 302,550 + -1.5 302,551 - -1.5 302,551 - -0.2 302,551 - +0.2 302,551 - +0.2 302,551 - +0.2 302,551 - +0.9 302,551 - -1.6 302,552 + -0.2 302,552 + -0.2 302,552 + -0.5 302,552 + -0.3 302,552 + -0.9 302,552 + -0.4 302,552 + -0.3 302,552 + +0.4 302,552 + -1.3 302,552 + +0.2 302,552 + +0.5 302,552 + +2.1 302,552 + -0.1 302,552 + -1.1 302,552 + +0.1 302,552 + -0.4 302,552 + -0.7 302,552 + +0.6 302,552 + -0.7 302,552 + -1.2 302,552 + +0.6 302,552 + +1.1 302,552 + -0.5 302,552 + +0.7 302,552 + +1.7 302,552 + +0.6 302,552 + +1.0 302,552 + -0.7 302,552 + +0.7 302,552 + -1.2 302,552 + +0.7 302,552 + -0.1 302,552 + +0.2 302,552 + +0.4 302,553 - -1.2 302,553 - -1.5 302,553 - -0.6 302,553 - -0.1 302,553 - +0.2 302,553 - -1.2 302,553 - +0.3 302,553 - +0.1 302,553 - +0.4 302,553 - +0.1 302,553 - +0.1 302,553 - +0.1 302,553 - +0.2 302,553 - +1.0 302,553 - -0.1 302,553 - -0.7 302,553 - -0.5 302,553 - -1.1 302,553 - +0.4 302,553 - -0.1 302,553 - -0.0 302,553 - -0.4 302,553 - +1.1 302,553 - +3.4 302,553 - +0.2 302,553 - -0.4 302,553 - +0.4 302,553 - +0.6 302,553 - -0.1 302,553 - +0.6 302,553 - -0.0 302,553 - +0.1 302,553 - -0.3 302,553 - -0.1 302,553 - +0.5 302,553 - -0.9 302,553 - -0.1 302,553 - +0.9 302,553 - -0.5 302,553 - +0.4 302,553 - +0.3 302,681 - -0.2 302,681 - -0.9 302,681 - -0.8 302,681 - -0.7 302,814 - Psyr_0284 0.20 -0.8 302,877 + Psyr_0284 0.30 -0.8 302,906 + Psyr_0284 0.35 -1.2 302,906 + Psyr_0284 0.35 +0.1 302,907 - Psyr_0284 0.35 -1.6 302,907 - Psyr_0284 0.35 -0.7 302,907 - Psyr_0284 0.35 -0.1 302,931 - Psyr_0284 0.39 -1.2 302,931 - Psyr_0284 0.39 +0.3 303,077 + Psyr_0284 0.62 -1.0 303,365 + -1.2 303,365 + +0.3 303,365 + -0.2 303,365 + -1.3 303,365 + -0.5 303,365 + -0.3 303,365 + -0.4 303,365 + +0.2 303,365 + -0.4 303,365 + -0.2 303,365 + +0.1 303,365 + +1.8 303,365 + -0.1 303,366 - +2.1 303,366 - +0.1 303,366 - -0.5 303,366 - -0.2 303,366 - -0.4 303,366 - -0.5 303,366 - +0.1 303,366 - -1.5 303,366 - +0.8 303,366 - +0.6 303,367 + +0.9 303,383 + +2.7 303,384 - -0.2 303,389 + +0.5 303,390 - -1.7 303,414 + +0.4 303,414 + +0.1 303,414 + +0.8 303,414 + +0.3 303,414 + -0.3 303,415 - +0.2 303,417 - -0.7 303,417 - -0.5 303,417 - +0.4 303,436 + +0.5 303,436 + +0.5 303,437 - +0.9 303,437 - -0.2 303,437 - -0.4 303,678 - Psyr_0285 0.59 +1.3 303,785 + Psyr_0285 0.81 +1.3 303,786 - Psyr_0285 0.81 +0.2 303,812 - Psyr_0285 0.86 -0.0 303,826 + Psyr_0285 0.89 -1.2 303,827 - Psyr_0285 0.89 -0.6 303,827 - Psyr_0285 0.89 +0.3 303,827 - Psyr_0285 0.89 +0.8 303,827 - Psyr_0285 0.89 -0.6 303,827 - Psyr_0285 0.89 -0.9 303,829 + Psyr_0285 0.90 +4.9 303,829 + Psyr_0285 0.90 -0.7 303,829 + Psyr_0285 0.90 +0.1 303,829 + Psyr_0285 0.90 +0.3 303,830 - -0.1 303,830 - +1.1 303,830 - -0.9 303,830 - +0.3 303,830 - +0.2 303,897 - +1.1 303,897 - +1.0 303,997 + -0.2 303,998 - +0.2 304,030 - -0.3 304,053 + +0.6 304,057 + +0.4 304,057 + -0.4 304,057 + -1.2 304,067 - +0.0 304,071 + -2.7 304,072 - +0.2 304,155 + +0.3 304,156 - +0.8 304,156 - +0.4 304,156 - -1.1 304,156 - -1.0 304,161 + +0.0 304,161 + +0.4 304,161 + +1.8 304,292 + Psyr_0286 0.25 -0.2 304,293 - Psyr_0286 0.25 +0.2 304,293 - Psyr_0286 0.25 +0.3 304,293 - Psyr_0286 0.25 +0.3 304,365 + Psyr_0286 0.37 -0.1 304,366 - Psyr_0286 0.37 +0.7 304,460 + Psyr_0286 0.51 +0.2 304,460 + Psyr_0286 0.51 +1.1 304,461 - Psyr_0286 0.51 +0.5 304,461 - Psyr_0286 0.51 -0.4 304,461 - Psyr_0286 0.51 -0.8 304,499 + Psyr_0286 0.57 +1.5 304,499 + Psyr_0286 0.57 +0.6 304,499 + Psyr_0286 0.57 +0.7 304,499 + Psyr_0286 0.57 +0.3 304,499 + Psyr_0286 0.57 -0.4 304,499 + Psyr_0286 0.57 -0.8 304,499 + Psyr_0286 0.57 +0.7 304,500 - Psyr_0286 0.57 +1.1 304,500 - Psyr_0286 0.57 +0.1 304,500 - Psyr_0286 0.57 +0.1 304,500 - Psyr_0286 0.57 -0.4 304,500 - Psyr_0286 0.57 -1.0 304,537 + Psyr_0286 0.63 +0.4 304,840 - -0.3
Or see this region's nucleotide sequence