Experiment: KB with Nitrofurantoin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0278 and Psyr_0279 are separated by 38 nucleotides Psyr_0279 and Psyr_0280 are separated by 152 nucleotides Psyr_0280 and Psyr_0281 are separated by 307 nucleotides
Psyr_0278: Psyr_0278 - ABC-3, at 295,781 to 296,569
_0278
Psyr_0279: Psyr_0279 - lipoprotein, putative, at 296,608 to 297,324
_0279
Psyr_0280: Psyr_0280 - Catalase, at 297,477 to 299,627
_0280
Psyr_0281: Psyr_0281 - ABC transporter, at 299,935 to 300,942
_0281
Position (kb) 297
298
299
300 Strain fitness (log2 ratio) -2
-1
0
1
2 at 296.506 kb on + strand at 296.507 kb on - strand at 296.507 kb on - strand at 296.507 kb on - strand at 296.508 kb on + strand at 296.509 kb on - strand at 296.509 kb on - strand at 296.550 kb on + strand at 296.567 kb on + strand at 296.568 kb on - strand at 296.568 kb on - strand at 296.568 kb on - strand at 296.629 kb on + strand at 296.630 kb on - strand at 296.871 kb on - strand, within Psyr_0279 at 297.102 kb on + strand, within Psyr_0279 at 297.210 kb on + strand, within Psyr_0279 at 297.210 kb on + strand, within Psyr_0279 at 297.210 kb on + strand, within Psyr_0279 at 297.211 kb on - strand, within Psyr_0279 at 297.404 kb on + strand at 297.404 kb on + strand at 297.404 kb on + strand at 297.405 kb on - strand at 297.405 kb on - strand at 297.405 kb on - strand at 297.405 kb on - strand at 297.405 kb on - strand at 297.406 kb on + strand at 297.406 kb on + strand at 297.406 kb on + strand at 297.407 kb on - strand at 297.407 kb on - strand at 297.464 kb on + strand at 297.464 kb on + strand at 297.465 kb on - strand at 297.465 kb on - strand at 297.465 kb on - strand at 297.603 kb on + strand at 297.661 kb on + strand at 297.661 kb on + strand at 297.661 kb on + strand at 297.662 kb on - strand at 297.662 kb on - strand at 297.662 kb on - strand at 297.837 kb on + strand, within Psyr_0280 at 298.008 kb on + strand, within Psyr_0280 at 298.008 kb on + strand, within Psyr_0280 at 298.080 kb on - strand, within Psyr_0280 at 298.114 kb on + strand, within Psyr_0280 at 298.114 kb on + strand, within Psyr_0280 at 298.114 kb on + strand, within Psyr_0280 at 298.114 kb on + strand, within Psyr_0280 at 298.114 kb on + strand, within Psyr_0280 at 298.114 kb on + strand, within Psyr_0280 at 298.115 kb on - strand, within Psyr_0280 at 298.115 kb on - strand, within Psyr_0280 at 298.115 kb on - strand, within Psyr_0280 at 298.148 kb on - strand, within Psyr_0280 at 298.148 kb on - strand, within Psyr_0280 at 298.273 kb on + strand, within Psyr_0280 at 298.293 kb on + strand, within Psyr_0280 at 298.294 kb on - strand, within Psyr_0280 at 298.349 kb on - strand, within Psyr_0280 at 298.349 kb on - strand, within Psyr_0280 at 298.483 kb on + strand, within Psyr_0280 at 298.484 kb on - strand, within Psyr_0280 at 298.582 kb on + strand, within Psyr_0280 at 298.582 kb on + strand, within Psyr_0280 at 298.582 kb on + strand, within Psyr_0280 at 298.582 kb on + strand, within Psyr_0280 at 298.583 kb on - strand, within Psyr_0280 at 298.583 kb on - strand, within Psyr_0280 at 298.583 kb on - strand, within Psyr_0280 at 298.583 kb on - strand, within Psyr_0280 at 298.583 kb on - strand, within Psyr_0280 at 298.583 kb on - strand, within Psyr_0280 at 298.583 kb on - strand, within Psyr_0280 at 298.583 kb on - strand, within Psyr_0280 at 298.583 kb on - strand, within Psyr_0280 at 298.583 kb on - strand, within Psyr_0280 at 298.713 kb on + strand, within Psyr_0280 at 298.714 kb on - strand, within Psyr_0280 at 298.714 kb on - strand, within Psyr_0280 at 298.714 kb on - strand, within Psyr_0280 at 298.714 kb on - strand, within Psyr_0280 at 298.714 kb on - strand, within Psyr_0280 at 298.874 kb on + strand, within Psyr_0280 at 298.874 kb on + strand, within Psyr_0280 at 298.874 kb on + strand, within Psyr_0280 at 298.875 kb on - strand, within Psyr_0280 at 298.889 kb on + strand, within Psyr_0280 at 298.889 kb on + strand, within Psyr_0280 at 298.889 kb on + strand, within Psyr_0280 at 298.890 kb on - strand, within Psyr_0280 at 299.305 kb on + strand, within Psyr_0280 at 299.306 kb on - strand, within Psyr_0280 at 299.306 kb on - strand, within Psyr_0280 at 299.317 kb on + strand, within Psyr_0280 at 299.317 kb on + strand, within Psyr_0280 at 299.318 kb on - strand, within Psyr_0280 at 299.318 kb on - strand, within Psyr_0280 at 299.364 kb on - strand, within Psyr_0280 at 299.639 kb on + strand at 299.639 kb on + strand at 299.640 kb on - strand at 299.675 kb on - strand at 299.690 kb on + strand at 299.691 kb on - strand at 299.748 kb on - strand at 299.748 kb on - strand at 299.758 kb on + strand at 299.758 kb on + strand at 299.759 kb on - strand at 299.759 kb on - strand at 299.779 kb on + strand at 299.805 kb on - strand at 299.805 kb on - strand at 299.808 kb on + strand at 299.808 kb on + strand at 299.808 kb on + strand at 299.808 kb on + strand at 299.808 kb on + strand at 299.808 kb on + strand at 299.809 kb on - strand at 299.815 kb on + strand at 299.815 kb on + strand at 299.816 kb on - strand at 299.816 kb on - strand at 299.816 kb on - strand at 299.838 kb on + strand at 299.890 kb on + strand at 299.965 kb on + strand at 299.965 kb on + strand at 300.270 kb on + strand, within Psyr_0281 at 300.528 kb on + strand, within Psyr_0281
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 0.0625 mg/ml remove 296,506 + -1.0 296,507 - -0.1 296,507 - +0.2 296,507 - +0.6 296,508 + -0.1 296,509 - +0.5 296,509 - -0.6 296,550 + -0.5 296,567 + +0.3 296,568 - +0.2 296,568 - +0.1 296,568 - +0.2 296,629 + +0.3 296,630 - +0.5 296,871 - Psyr_0279 0.37 -1.8 297,102 + Psyr_0279 0.69 +0.3 297,210 + Psyr_0279 0.84 -0.6 297,210 + Psyr_0279 0.84 -0.8 297,210 + Psyr_0279 0.84 -1.0 297,211 - Psyr_0279 0.84 -0.5 297,404 + +0.8 297,404 + +0.1 297,404 + +1.3 297,405 - -0.3 297,405 - +0.5 297,405 - -1.5 297,405 - +0.2 297,405 - -0.7 297,406 + -0.7 297,406 + -0.1 297,406 + -2.6 297,407 - -0.4 297,407 - +0.7 297,464 + -0.5 297,464 + +0.2 297,465 - +0.9 297,465 - -0.3 297,465 - +0.0 297,603 + +0.4 297,661 + +1.2 297,661 + -1.1 297,661 + +0.7 297,662 - +1.5 297,662 - +0.5 297,662 - +1.1 297,837 + Psyr_0280 0.17 +1.2 298,008 + Psyr_0280 0.25 +0.4 298,008 + Psyr_0280 0.25 -0.2 298,080 - Psyr_0280 0.28 +0.1 298,114 + Psyr_0280 0.30 -1.3 298,114 + Psyr_0280 0.30 +0.0 298,114 + Psyr_0280 0.30 +0.5 298,114 + Psyr_0280 0.30 +0.4 298,114 + Psyr_0280 0.30 +0.5 298,114 + Psyr_0280 0.30 -0.1 298,115 - Psyr_0280 0.30 +0.7 298,115 - Psyr_0280 0.30 -0.2 298,115 - Psyr_0280 0.30 +0.2 298,148 - Psyr_0280 0.31 -1.9 298,148 - Psyr_0280 0.31 +0.3 298,273 + Psyr_0280 0.37 +0.1 298,293 + Psyr_0280 0.38 +0.9 298,294 - Psyr_0280 0.38 -0.5 298,349 - Psyr_0280 0.41 +0.8 298,349 - Psyr_0280 0.41 +0.3 298,483 + Psyr_0280 0.47 -1.1 298,484 - Psyr_0280 0.47 +0.1 298,582 + Psyr_0280 0.51 -0.3 298,582 + Psyr_0280 0.51 -0.8 298,582 + Psyr_0280 0.51 -0.0 298,582 + Psyr_0280 0.51 +1.5 298,583 - Psyr_0280 0.51 +0.7 298,583 - Psyr_0280 0.51 -0.1 298,583 - Psyr_0280 0.51 -0.1 298,583 - Psyr_0280 0.51 -0.5 298,583 - Psyr_0280 0.51 -0.1 298,583 - Psyr_0280 0.51 -0.1 298,583 - Psyr_0280 0.51 -0.8 298,583 - Psyr_0280 0.51 +0.6 298,583 - Psyr_0280 0.51 -0.7 298,583 - Psyr_0280 0.51 -0.6 298,713 + Psyr_0280 0.57 +0.1 298,714 - Psyr_0280 0.58 +0.5 298,714 - Psyr_0280 0.58 +0.5 298,714 - Psyr_0280 0.58 -0.0 298,714 - Psyr_0280 0.58 +1.4 298,714 - Psyr_0280 0.58 +0.9 298,874 + Psyr_0280 0.65 +0.6 298,874 + Psyr_0280 0.65 -0.9 298,874 + Psyr_0280 0.65 +0.2 298,875 - Psyr_0280 0.65 +0.3 298,889 + Psyr_0280 0.66 -0.3 298,889 + Psyr_0280 0.66 +0.6 298,889 + Psyr_0280 0.66 +1.3 298,890 - Psyr_0280 0.66 +0.3 299,305 + Psyr_0280 0.85 -0.7 299,306 - Psyr_0280 0.85 +0.7 299,306 - Psyr_0280 0.85 +0.1 299,317 + Psyr_0280 0.86 +0.9 299,317 + Psyr_0280 0.86 -0.1 299,318 - Psyr_0280 0.86 -0.1 299,318 - Psyr_0280 0.86 +2.2 299,364 - Psyr_0280 0.88 -0.1 299,639 + -0.6 299,639 + -1.5 299,640 - -0.8 299,675 - -0.8 299,690 + +1.3 299,691 - +0.4 299,748 - +1.1 299,748 - -0.5 299,758 + +0.6 299,758 + -0.0 299,759 - -0.6 299,759 - +0.2 299,779 + -0.5 299,805 - +1.1 299,805 - +1.3 299,808 + -0.5 299,808 + -0.1 299,808 + -0.5 299,808 + -1.5 299,808 + -0.9 299,808 + -0.7 299,809 - -0.5 299,815 + -0.1 299,815 + -0.5 299,816 - +1.6 299,816 - -0.1 299,816 - -0.5 299,838 + -0.4 299,890 + +1.7 299,965 + +0.5 299,965 + -0.1 300,270 + Psyr_0281 0.33 -0.3 300,528 + Psyr_0281 0.59 -1.0
Or see this region's nucleotide sequence