Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4030

Experiment: Methyl-B-D-galactopyranoside 20mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4028 and Echvi_4029 are separated by 51 nucleotidesEchvi_4029 and Echvi_4030 are separated by 106 nucleotidesEchvi_4030 and Echvi_4031 are separated by 121 nucleotides Echvi_4028: Echvi_4028 - Outer membrane receptor for ferrienterochelin and colicins, at 4,822,566 to 4,824,929 _4028 Echvi_4029: Echvi_4029 - Thiol:disulfide interchange protein, at 4,824,981 to 4,825,478 _4029 Echvi_4030: Echvi_4030 - Pirin-related protein, at 4,825,585 to 4,826,604 _4030 Echvi_4031: Echvi_4031 - glycerate kinase, at 4,826,726 to 4,827,838 _4031 Position (kb) 4825 4826 4827Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4824.598 kb on - strand, within Echvi_4028at 4824.683 kb on - strand, within Echvi_4028at 4824.702 kb on - strandat 4824.753 kb on + strandat 4824.770 kb on - strandat 4824.803 kb on - strandat 4824.815 kb on - strandat 4824.865 kb on - strandat 4824.866 kb on + strandat 4824.932 kb on + strandat 4824.933 kb on - strandat 4825.040 kb on + strand, within Echvi_4029at 4825.148 kb on + strand, within Echvi_4029at 4825.152 kb on + strand, within Echvi_4029at 4825.219 kb on - strand, within Echvi_4029at 4825.324 kb on + strand, within Echvi_4029at 4825.333 kb on + strand, within Echvi_4029at 4825.343 kb on + strand, within Echvi_4029at 4825.419 kb on + strand, within Echvi_4029at 4825.593 kb on + strandat 4825.831 kb on - strand, within Echvi_4030at 4825.997 kb on + strand, within Echvi_4030at 4825.997 kb on + strand, within Echvi_4030at 4826.142 kb on - strand, within Echvi_4030at 4826.142 kb on - strand, within Echvi_4030at 4826.142 kb on - strand, within Echvi_4030at 4826.281 kb on + strand, within Echvi_4030at 4826.282 kb on - strand, within Echvi_4030at 4826.282 kb on - strand, within Echvi_4030at 4826.282 kb on - strand, within Echvi_4030at 4826.603 kb on - strandat 4826.607 kb on + strandat 4826.615 kb on + strandat 4826.885 kb on + strand, within Echvi_4031at 4826.885 kb on + strand, within Echvi_4031at 4826.926 kb on + strand, within Echvi_4031at 4826.926 kb on + strand, within Echvi_4031at 4826.927 kb on - strand, within Echvi_4031at 4826.928 kb on + strand, within Echvi_4031at 4826.928 kb on + strand, within Echvi_4031at 4826.928 kb on + strand, within Echvi_4031at 4826.928 kb on + strand, within Echvi_4031at 4826.929 kb on - strand, within Echvi_4031at 4827.033 kb on + strand, within Echvi_4031at 4827.088 kb on + strand, within Echvi_4031at 4827.280 kb on + strand, within Echvi_4031

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Per-strain Table

Position Strand Gene LocusTag Fraction Methyl-B-D-galactopyranoside 20mM (C)
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4,824,598 - Echvi_4028 0.86 +1.0
4,824,683 - Echvi_4028 0.90 -0.2
4,824,702 - +0.4
4,824,753 + -0.8
4,824,770 - -0.7
4,824,803 - +0.4
4,824,815 - -0.2
4,824,865 - -1.9
4,824,866 + +2.1
4,824,932 + -0.4
4,824,933 - +0.6
4,825,040 + Echvi_4029 0.12 -1.7
4,825,148 + Echvi_4029 0.34 -1.3
4,825,152 + Echvi_4029 0.34 -1.2
4,825,219 - Echvi_4029 0.48 -0.3
4,825,324 + Echvi_4029 0.69 -0.8
4,825,333 + Echvi_4029 0.71 +0.9
4,825,343 + Echvi_4029 0.73 +1.6
4,825,419 + Echvi_4029 0.88 -0.8
4,825,593 + +1.2
4,825,831 - Echvi_4030 0.24 -0.0
4,825,997 + Echvi_4030 0.40 -1.4
4,825,997 + Echvi_4030 0.40 -1.7
4,826,142 - Echvi_4030 0.55 -0.0
4,826,142 - Echvi_4030 0.55 -2.8
4,826,142 - Echvi_4030 0.55 -1.9
4,826,281 + Echvi_4030 0.68 -0.3
4,826,282 - Echvi_4030 0.68 -2.7
4,826,282 - Echvi_4030 0.68 -0.1
4,826,282 - Echvi_4030 0.68 -2.4
4,826,603 - +0.5
4,826,607 + -0.8
4,826,615 + +0.2
4,826,885 + Echvi_4031 0.14 +0.4
4,826,885 + Echvi_4031 0.14 +0.6
4,826,926 + Echvi_4031 0.18 +2.2
4,826,926 + Echvi_4031 0.18 +0.2
4,826,927 - Echvi_4031 0.18 -3.4
4,826,928 + Echvi_4031 0.18 -1.4
4,826,928 + Echvi_4031 0.18 +0.4
4,826,928 + Echvi_4031 0.18 -0.1
4,826,928 + Echvi_4031 0.18 -1.3
4,826,929 - Echvi_4031 0.18 -0.5
4,827,033 + Echvi_4031 0.28 -0.8
4,827,088 + Echvi_4031 0.33 +1.2
4,827,280 + Echvi_4031 0.50 +1.0

Or see this region's nucleotide sequence