Experiment: Methyl-B-D-galactopyranoside 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4028 and Echvi_4029 are separated by 51 nucleotides Echvi_4029 and Echvi_4030 are separated by 106 nucleotides Echvi_4030 and Echvi_4031 are separated by 121 nucleotides
Echvi_4028: Echvi_4028 - Outer membrane receptor for ferrienterochelin and colicins, at 4,822,566 to 4,824,929
_4028
Echvi_4029: Echvi_4029 - Thiol:disulfide interchange protein, at 4,824,981 to 4,825,478
_4029
Echvi_4030: Echvi_4030 - Pirin-related protein, at 4,825,585 to 4,826,604
_4030
Echvi_4031: Echvi_4031 - glycerate kinase, at 4,826,726 to 4,827,838
_4031
Position (kb)
4825
4826
4827 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4824.598 kb on - strand, within Echvi_4028 at 4824.683 kb on - strand, within Echvi_4028 at 4824.702 kb on - strand at 4824.753 kb on + strand at 4824.770 kb on - strand at 4824.803 kb on - strand at 4824.815 kb on - strand at 4824.865 kb on - strand at 4824.866 kb on + strand at 4824.932 kb on + strand at 4824.933 kb on - strand at 4825.040 kb on + strand, within Echvi_4029 at 4825.148 kb on + strand, within Echvi_4029 at 4825.152 kb on + strand, within Echvi_4029 at 4825.219 kb on - strand, within Echvi_4029 at 4825.324 kb on + strand, within Echvi_4029 at 4825.333 kb on + strand, within Echvi_4029 at 4825.343 kb on + strand, within Echvi_4029 at 4825.419 kb on + strand, within Echvi_4029 at 4825.593 kb on + strand at 4825.831 kb on - strand, within Echvi_4030 at 4825.997 kb on + strand, within Echvi_4030 at 4825.997 kb on + strand, within Echvi_4030 at 4826.142 kb on - strand, within Echvi_4030 at 4826.142 kb on - strand, within Echvi_4030 at 4826.142 kb on - strand, within Echvi_4030 at 4826.281 kb on + strand, within Echvi_4030 at 4826.282 kb on - strand, within Echvi_4030 at 4826.282 kb on - strand, within Echvi_4030 at 4826.282 kb on - strand, within Echvi_4030 at 4826.603 kb on - strand at 4826.607 kb on + strand at 4826.615 kb on + strand at 4826.885 kb on + strand, within Echvi_4031 at 4826.885 kb on + strand, within Echvi_4031 at 4826.926 kb on + strand, within Echvi_4031 at 4826.926 kb on + strand, within Echvi_4031 at 4826.927 kb on - strand, within Echvi_4031 at 4826.928 kb on + strand, within Echvi_4031 at 4826.928 kb on + strand, within Echvi_4031 at 4826.928 kb on + strand, within Echvi_4031 at 4826.928 kb on + strand, within Echvi_4031 at 4826.929 kb on - strand, within Echvi_4031 at 4827.033 kb on + strand, within Echvi_4031 at 4827.088 kb on + strand, within Echvi_4031 at 4827.280 kb on + strand, within Echvi_4031
Per-strain Table
Position Strand Gene LocusTag Fraction Methyl-B-D-galactopyranoside 20mM (C) remove 4,824,598 - Echvi_4028 0.86 +1.0 4,824,683 - Echvi_4028 0.90 -0.2 4,824,702 - +0.4 4,824,753 + -0.8 4,824,770 - -0.7 4,824,803 - +0.4 4,824,815 - -0.2 4,824,865 - -1.9 4,824,866 + +2.1 4,824,932 + -0.4 4,824,933 - +0.6 4,825,040 + Echvi_4029 0.12 -1.7 4,825,148 + Echvi_4029 0.34 -1.3 4,825,152 + Echvi_4029 0.34 -1.2 4,825,219 - Echvi_4029 0.48 -0.3 4,825,324 + Echvi_4029 0.69 -0.8 4,825,333 + Echvi_4029 0.71 +0.9 4,825,343 + Echvi_4029 0.73 +1.6 4,825,419 + Echvi_4029 0.88 -0.8 4,825,593 + +1.2 4,825,831 - Echvi_4030 0.24 -0.0 4,825,997 + Echvi_4030 0.40 -1.4 4,825,997 + Echvi_4030 0.40 -1.7 4,826,142 - Echvi_4030 0.55 -0.0 4,826,142 - Echvi_4030 0.55 -2.8 4,826,142 - Echvi_4030 0.55 -1.9 4,826,281 + Echvi_4030 0.68 -0.3 4,826,282 - Echvi_4030 0.68 -2.7 4,826,282 - Echvi_4030 0.68 -0.1 4,826,282 - Echvi_4030 0.68 -2.4 4,826,603 - +0.5 4,826,607 + -0.8 4,826,615 + +0.2 4,826,885 + Echvi_4031 0.14 +0.4 4,826,885 + Echvi_4031 0.14 +0.6 4,826,926 + Echvi_4031 0.18 +2.2 4,826,926 + Echvi_4031 0.18 +0.2 4,826,927 - Echvi_4031 0.18 -3.4 4,826,928 + Echvi_4031 0.18 -1.4 4,826,928 + Echvi_4031 0.18 +0.4 4,826,928 + Echvi_4031 0.18 -0.1 4,826,928 + Echvi_4031 0.18 -1.3 4,826,929 - Echvi_4031 0.18 -0.5 4,827,033 + Echvi_4031 0.28 -0.8 4,827,088 + Echvi_4031 0.33 +1.2 4,827,280 + Echvi_4031 0.50 +1.0
Or see this region's nucleotide sequence