Experiment: Methyl-B-D-galactopyranoside 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3693 and Echvi_3694 are separated by 169 nucleotides Echvi_3694 and Echvi_3695 overlap by 32 nucleotides Echvi_3695 and Echvi_3696 are separated by 68 nucleotides Echvi_3696 and Echvi_3697 are separated by 101 nucleotides
Echvi_3693: Echvi_3693 - Receptor L domain., at 4,399,585 to 4,402,083
_3693
Echvi_3694: Echvi_3694 - hypothetical protein, at 4,402,253 to 4,402,363
_3694
Echvi_3695: Echvi_3695 - hypothetical protein, at 4,402,332 to 4,403,180
_3695
Echvi_3696: Echvi_3696 - hypothetical protein, at 4,403,249 to 4,403,602
_3696
Echvi_3697: Echvi_3697 - hypothetical protein, at 4,403,704 to 4,404,660
_3697
Position (kb)
4402
4403
4404 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4401.367 kb on - strand, within Echvi_3693 at 4401.367 kb on - strand, within Echvi_3693 at 4401.397 kb on + strand, within Echvi_3693 at 4401.408 kb on + strand, within Echvi_3693 at 4401.408 kb on + strand, within Echvi_3693 at 4401.408 kb on + strand, within Echvi_3693 at 4401.408 kb on + strand, within Echvi_3693 at 4401.409 kb on - strand, within Echvi_3693 at 4401.409 kb on - strand, within Echvi_3693 at 4401.421 kb on - strand, within Echvi_3693 at 4401.421 kb on - strand, within Echvi_3693 at 4401.421 kb on - strand, within Echvi_3693 at 4401.440 kb on - strand, within Echvi_3693 at 4401.496 kb on + strand, within Echvi_3693 at 4401.496 kb on + strand, within Echvi_3693 at 4401.496 kb on + strand, within Echvi_3693 at 4401.496 kb on + strand, within Echvi_3693 at 4401.497 kb on - strand, within Echvi_3693 at 4401.497 kb on - strand, within Echvi_3693 at 4401.498 kb on + strand, within Echvi_3693 at 4401.498 kb on + strand, within Echvi_3693 at 4401.498 kb on + strand, within Echvi_3693 at 4401.499 kb on - strand, within Echvi_3693 at 4401.499 kb on - strand, within Echvi_3693 at 4401.544 kb on + strand, within Echvi_3693 at 4401.544 kb on + strand, within Echvi_3693 at 4401.545 kb on - strand, within Echvi_3693 at 4401.545 kb on - strand, within Echvi_3693 at 4401.621 kb on + strand, within Echvi_3693 at 4401.622 kb on - strand, within Echvi_3693 at 4401.757 kb on + strand, within Echvi_3693 at 4401.757 kb on + strand, within Echvi_3693 at 4401.783 kb on - strand, within Echvi_3693 at 4401.816 kb on - strand, within Echvi_3693 at 4401.845 kb on - strand at 4401.885 kb on + strand at 4401.919 kb on - strand at 4401.919 kb on - strand at 4401.967 kb on - strand at 4402.028 kb on + strand at 4402.028 kb on + strand at 4402.028 kb on + strand at 4402.037 kb on - strand at 4402.055 kb on - strand at 4402.055 kb on - strand at 4402.055 kb on - strand at 4402.059 kb on + strand at 4402.071 kb on - strand at 4402.071 kb on - strand at 4402.073 kb on + strand at 4402.321 kb on + strand, within Echvi_3694 at 4402.459 kb on - strand, within Echvi_3695 at 4402.537 kb on + strand, within Echvi_3695 at 4402.537 kb on + strand, within Echvi_3695 at 4402.537 kb on + strand, within Echvi_3695 at 4402.561 kb on + strand, within Echvi_3695 at 4402.561 kb on + strand, within Echvi_3695 at 4402.562 kb on - strand, within Echvi_3695 at 4402.562 kb on - strand, within Echvi_3695 at 4402.565 kb on + strand, within Echvi_3695 at 4402.566 kb on - strand, within Echvi_3695 at 4402.604 kb on + strand, within Echvi_3695 at 4402.604 kb on + strand, within Echvi_3695 at 4402.605 kb on - strand, within Echvi_3695 at 4402.614 kb on - strand, within Echvi_3695 at 4402.615 kb on + strand, within Echvi_3695 at 4402.615 kb on + strand, within Echvi_3695 at 4402.616 kb on - strand, within Echvi_3695 at 4402.633 kb on + strand, within Echvi_3695 at 4402.659 kb on - strand, within Echvi_3695 at 4402.660 kb on + strand, within Echvi_3695 at 4402.660 kb on + strand, within Echvi_3695 at 4402.672 kb on + strand, within Echvi_3695 at 4402.673 kb on - strand, within Echvi_3695 at 4402.673 kb on - strand, within Echvi_3695 at 4402.818 kb on - strand, within Echvi_3695 at 4402.818 kb on - strand, within Echvi_3695 at 4402.861 kb on + strand, within Echvi_3695 at 4402.862 kb on - strand, within Echvi_3695 at 4402.862 kb on - strand, within Echvi_3695 at 4402.862 kb on - strand, within Echvi_3695 at 4402.869 kb on - strand, within Echvi_3695 at 4402.881 kb on + strand, within Echvi_3695 at 4402.936 kb on + strand, within Echvi_3695 at 4402.937 kb on - strand, within Echvi_3695 at 4402.937 kb on - strand, within Echvi_3695 at 4403.028 kb on - strand, within Echvi_3695 at 4403.029 kb on + strand, within Echvi_3695 at 4403.029 kb on + strand, within Echvi_3695 at 4403.029 kb on + strand, within Echvi_3695 at 4403.029 kb on + strand, within Echvi_3695 at 4403.050 kb on - strand, within Echvi_3695 at 4403.054 kb on + strand, within Echvi_3695 at 4403.086 kb on + strand, within Echvi_3695 at 4403.086 kb on + strand, within Echvi_3695 at 4403.087 kb on - strand, within Echvi_3695 at 4403.088 kb on + strand, within Echvi_3695 at 4403.088 kb on + strand, within Echvi_3695 at 4403.089 kb on - strand, within Echvi_3695 at 4403.094 kb on - strand, within Echvi_3695 at 4403.094 kb on - strand, within Echvi_3695 at 4403.123 kb on - strand at 4403.142 kb on + strand at 4403.145 kb on + strand at 4403.189 kb on + strand at 4403.189 kb on + strand at 4403.190 kb on - strand at 4403.201 kb on + strand at 4403.307 kb on - strand, within Echvi_3696 at 4403.312 kb on + strand, within Echvi_3696 at 4403.361 kb on + strand, within Echvi_3696 at 4403.362 kb on - strand, within Echvi_3696 at 4403.430 kb on + strand, within Echvi_3696 at 4403.523 kb on + strand, within Echvi_3696 at 4403.523 kb on + strand, within Echvi_3696 at 4403.523 kb on + strand, within Echvi_3696 at 4403.523 kb on + strand, within Echvi_3696 at 4403.524 kb on - strand, within Echvi_3696 at 4403.524 kb on - strand, within Echvi_3696 at 4403.524 kb on - strand, within Echvi_3696 at 4403.524 kb on - strand, within Echvi_3696 at 4403.524 kb on - strand, within Echvi_3696 at 4403.540 kb on + strand, within Echvi_3696 at 4403.569 kb on - strand at 4403.569 kb on - strand at 4403.770 kb on - strand at 4403.877 kb on + strand, within Echvi_3697 at 4403.879 kb on + strand, within Echvi_3697 at 4403.880 kb on - strand, within Echvi_3697 at 4403.883 kb on + strand, within Echvi_3697 at 4403.884 kb on - strand, within Echvi_3697 at 4403.920 kb on + strand, within Echvi_3697 at 4403.931 kb on + strand, within Echvi_3697 at 4403.931 kb on + strand, within Echvi_3697 at 4404.000 kb on + strand, within Echvi_3697 at 4404.000 kb on + strand, within Echvi_3697 at 4404.001 kb on - strand, within Echvi_3697 at 4404.001 kb on - strand, within Echvi_3697 at 4404.003 kb on - strand, within Echvi_3697 at 4404.065 kb on + strand, within Echvi_3697 at 4404.104 kb on + strand, within Echvi_3697 at 4404.112 kb on + strand, within Echvi_3697 at 4404.113 kb on - strand, within Echvi_3697
Per-strain Table
Position Strand Gene LocusTag Fraction Methyl-B-D-galactopyranoside 20mM (C) remove 4,401,367 - Echvi_3693 0.71 +1.6 4,401,367 - Echvi_3693 0.71 +2.2 4,401,397 + Echvi_3693 0.73 -0.2 4,401,408 + Echvi_3693 0.73 -0.2 4,401,408 + Echvi_3693 0.73 +1.3 4,401,408 + Echvi_3693 0.73 -0.5 4,401,408 + Echvi_3693 0.73 +0.0 4,401,409 - Echvi_3693 0.73 +0.2 4,401,409 - Echvi_3693 0.73 +2.0 4,401,421 - Echvi_3693 0.73 -0.6 4,401,421 - Echvi_3693 0.73 -1.2 4,401,421 - Echvi_3693 0.73 -0.4 4,401,440 - Echvi_3693 0.74 -0.4 4,401,496 + Echvi_3693 0.76 +0.6 4,401,496 + Echvi_3693 0.76 +1.3 4,401,496 + Echvi_3693 0.76 +3.4 4,401,496 + Echvi_3693 0.76 +0.4 4,401,497 - Echvi_3693 0.77 -0.6 4,401,497 - Echvi_3693 0.77 +1.1 4,401,498 + Echvi_3693 0.77 -0.9 4,401,498 + Echvi_3693 0.77 +0.2 4,401,498 + Echvi_3693 0.77 -1.8 4,401,499 - Echvi_3693 0.77 -1.5 4,401,499 - Echvi_3693 0.77 -0.4 4,401,544 + Echvi_3693 0.78 -0.1 4,401,544 + Echvi_3693 0.78 -2.8 4,401,545 - Echvi_3693 0.78 -1.2 4,401,545 - Echvi_3693 0.78 +1.3 4,401,621 + Echvi_3693 0.81 +0.1 4,401,622 - Echvi_3693 0.82 -0.9 4,401,757 + Echvi_3693 0.87 +0.1 4,401,757 + Echvi_3693 0.87 +0.3 4,401,783 - Echvi_3693 0.88 -0.9 4,401,816 - Echvi_3693 0.89 +0.0 4,401,845 - +0.6 4,401,885 + -2.3 4,401,919 - -0.5 4,401,919 - +0.3 4,401,967 - -1.6 4,402,028 + -0.6 4,402,028 + -0.4 4,402,028 + -2.3 4,402,037 - -0.5 4,402,055 - +2.3 4,402,055 - +0.2 4,402,055 - -0.5 4,402,059 + -0.5 4,402,071 - -0.4 4,402,071 - -0.5 4,402,073 + -0.5 4,402,321 + Echvi_3694 0.61 -1.6 4,402,459 - Echvi_3695 0.15 +0.2 4,402,537 + Echvi_3695 0.24 +3.7 4,402,537 + Echvi_3695 0.24 +1.4 4,402,537 + Echvi_3695 0.24 +0.8 4,402,561 + Echvi_3695 0.27 -0.3 4,402,561 + Echvi_3695 0.27 +1.7 4,402,562 - Echvi_3695 0.27 +0.7 4,402,562 - Echvi_3695 0.27 -0.5 4,402,565 + Echvi_3695 0.27 -0.1 4,402,566 - Echvi_3695 0.28 +0.8 4,402,604 + Echvi_3695 0.32 -1.1 4,402,604 + Echvi_3695 0.32 -0.1 4,402,605 - Echvi_3695 0.32 +0.7 4,402,614 - Echvi_3695 0.33 -2.3 4,402,615 + Echvi_3695 0.33 +1.1 4,402,615 + Echvi_3695 0.33 +3.4 4,402,616 - Echvi_3695 0.33 -0.7 4,402,633 + Echvi_3695 0.35 +0.2 4,402,659 - Echvi_3695 0.39 -0.0 4,402,660 + Echvi_3695 0.39 -0.8 4,402,660 + Echvi_3695 0.39 -0.4 4,402,672 + Echvi_3695 0.40 +0.2 4,402,673 - Echvi_3695 0.40 -0.5 4,402,673 - Echvi_3695 0.40 +0.3 4,402,818 - Echvi_3695 0.57 +0.7 4,402,818 - Echvi_3695 0.57 +0.8 4,402,861 + Echvi_3695 0.62 +1.7 4,402,862 - Echvi_3695 0.62 -0.5 4,402,862 - Echvi_3695 0.62 +2.1 4,402,862 - Echvi_3695 0.62 +0.2 4,402,869 - Echvi_3695 0.63 +0.3 4,402,881 + Echvi_3695 0.65 +1.6 4,402,936 + Echvi_3695 0.71 -1.1 4,402,937 - Echvi_3695 0.71 -1.2 4,402,937 - Echvi_3695 0.71 +1.9 4,403,028 - Echvi_3695 0.82 -1.2 4,403,029 + Echvi_3695 0.82 +0.4 4,403,029 + Echvi_3695 0.82 -0.9 4,403,029 + Echvi_3695 0.82 +0.4 4,403,029 + Echvi_3695 0.82 +0.1 4,403,050 - Echvi_3695 0.85 +0.2 4,403,054 + Echvi_3695 0.85 -3.1 4,403,086 + Echvi_3695 0.89 -0.0 4,403,086 + Echvi_3695 0.89 -0.3 4,403,087 - Echvi_3695 0.89 +2.0 4,403,088 + Echvi_3695 0.89 -0.5 4,403,088 + Echvi_3695 0.89 +1.9 4,403,089 - Echvi_3695 0.89 -0.4 4,403,094 - Echvi_3695 0.90 -0.5 4,403,094 - Echvi_3695 0.90 -0.9 4,403,123 - +1.6 4,403,142 + -1.1 4,403,145 + +0.9 4,403,189 + -0.9 4,403,189 + -0.0 4,403,190 - +1.1 4,403,201 + +1.5 4,403,307 - Echvi_3696 0.16 -0.5 4,403,312 + Echvi_3696 0.18 -1.8 4,403,361 + Echvi_3696 0.32 +0.9 4,403,362 - Echvi_3696 0.32 -1.2 4,403,430 + Echvi_3696 0.51 -0.4 4,403,523 + Echvi_3696 0.77 +1.0 4,403,523 + Echvi_3696 0.77 -0.7 4,403,523 + Echvi_3696 0.77 +1.6 4,403,523 + Echvi_3696 0.77 -0.1 4,403,524 - Echvi_3696 0.78 +0.2 4,403,524 - Echvi_3696 0.78 -0.2 4,403,524 - Echvi_3696 0.78 -0.3 4,403,524 - Echvi_3696 0.78 +1.1 4,403,524 - Echvi_3696 0.78 +0.8 4,403,540 + Echvi_3696 0.82 -0.4 4,403,569 - +0.3 4,403,569 - -0.6 4,403,770 - +0.1 4,403,877 + Echvi_3697 0.18 +1.1 4,403,879 + Echvi_3697 0.18 -2.5 4,403,880 - Echvi_3697 0.18 +0.7 4,403,883 + Echvi_3697 0.19 -1.9 4,403,884 - Echvi_3697 0.19 -0.5 4,403,920 + Echvi_3697 0.23 +1.8 4,403,931 + Echvi_3697 0.24 -0.1 4,403,931 + Echvi_3697 0.24 +0.8 4,404,000 + Echvi_3697 0.31 -3.1 4,404,000 + Echvi_3697 0.31 +0.5 4,404,001 - Echvi_3697 0.31 -0.7 4,404,001 - Echvi_3697 0.31 +1.1 4,404,003 - Echvi_3697 0.31 -1.5 4,404,065 + Echvi_3697 0.38 +0.8 4,404,104 + Echvi_3697 0.42 +0.1 4,404,112 + Echvi_3697 0.43 -1.3 4,404,113 - Echvi_3697 0.43 -0.9
Or see this region's nucleotide sequence