Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3695

Experiment: Methyl-B-D-galactopyranoside 20mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3693 and Echvi_3694 are separated by 169 nucleotidesEchvi_3694 and Echvi_3695 overlap by 32 nucleotidesEchvi_3695 and Echvi_3696 are separated by 68 nucleotidesEchvi_3696 and Echvi_3697 are separated by 101 nucleotides Echvi_3693: Echvi_3693 - Receptor L domain., at 4,399,585 to 4,402,083 _3693 Echvi_3694: Echvi_3694 - hypothetical protein, at 4,402,253 to 4,402,363 _3694 Echvi_3695: Echvi_3695 - hypothetical protein, at 4,402,332 to 4,403,180 _3695 Echvi_3696: Echvi_3696 - hypothetical protein, at 4,403,249 to 4,403,602 _3696 Echvi_3697: Echvi_3697 - hypothetical protein, at 4,403,704 to 4,404,660 _3697 Position (kb) 4402 4403 4404Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4401.367 kb on - strand, within Echvi_3693at 4401.367 kb on - strand, within Echvi_3693at 4401.397 kb on + strand, within Echvi_3693at 4401.408 kb on + strand, within Echvi_3693at 4401.408 kb on + strand, within Echvi_3693at 4401.408 kb on + strand, within Echvi_3693at 4401.408 kb on + strand, within Echvi_3693at 4401.409 kb on - strand, within Echvi_3693at 4401.409 kb on - strand, within Echvi_3693at 4401.421 kb on - strand, within Echvi_3693at 4401.421 kb on - strand, within Echvi_3693at 4401.421 kb on - strand, within Echvi_3693at 4401.440 kb on - strand, within Echvi_3693at 4401.496 kb on + strand, within Echvi_3693at 4401.496 kb on + strand, within Echvi_3693at 4401.496 kb on + strand, within Echvi_3693at 4401.496 kb on + strand, within Echvi_3693at 4401.497 kb on - strand, within Echvi_3693at 4401.497 kb on - strand, within Echvi_3693at 4401.498 kb on + strand, within Echvi_3693at 4401.498 kb on + strand, within Echvi_3693at 4401.498 kb on + strand, within Echvi_3693at 4401.499 kb on - strand, within Echvi_3693at 4401.499 kb on - strand, within Echvi_3693at 4401.544 kb on + strand, within Echvi_3693at 4401.544 kb on + strand, within Echvi_3693at 4401.545 kb on - strand, within Echvi_3693at 4401.545 kb on - strand, within Echvi_3693at 4401.621 kb on + strand, within Echvi_3693at 4401.622 kb on - strand, within Echvi_3693at 4401.757 kb on + strand, within Echvi_3693at 4401.757 kb on + strand, within Echvi_3693at 4401.783 kb on - strand, within Echvi_3693at 4401.816 kb on - strand, within Echvi_3693at 4401.845 kb on - strandat 4401.885 kb on + strandat 4401.919 kb on - strandat 4401.919 kb on - strandat 4401.967 kb on - strandat 4402.028 kb on + strandat 4402.028 kb on + strandat 4402.028 kb on + strandat 4402.037 kb on - strandat 4402.055 kb on - strandat 4402.055 kb on - strandat 4402.055 kb on - strandat 4402.059 kb on + strandat 4402.071 kb on - strandat 4402.071 kb on - strandat 4402.073 kb on + strandat 4402.321 kb on + strand, within Echvi_3694at 4402.459 kb on - strand, within Echvi_3695at 4402.537 kb on + strand, within Echvi_3695at 4402.537 kb on + strand, within Echvi_3695at 4402.537 kb on + strand, within Echvi_3695at 4402.561 kb on + strand, within Echvi_3695at 4402.561 kb on + strand, within Echvi_3695at 4402.562 kb on - strand, within Echvi_3695at 4402.562 kb on - strand, within Echvi_3695at 4402.565 kb on + strand, within Echvi_3695at 4402.566 kb on - strand, within Echvi_3695at 4402.604 kb on + strand, within Echvi_3695at 4402.604 kb on + strand, within Echvi_3695at 4402.605 kb on - strand, within Echvi_3695at 4402.614 kb on - strand, within Echvi_3695at 4402.615 kb on + strand, within Echvi_3695at 4402.615 kb on + strand, within Echvi_3695at 4402.616 kb on - strand, within Echvi_3695at 4402.633 kb on + strand, within Echvi_3695at 4402.659 kb on - strand, within Echvi_3695at 4402.660 kb on + strand, within Echvi_3695at 4402.660 kb on + strand, within Echvi_3695at 4402.672 kb on + strand, within Echvi_3695at 4402.673 kb on - strand, within Echvi_3695at 4402.673 kb on - strand, within Echvi_3695at 4402.818 kb on - strand, within Echvi_3695at 4402.818 kb on - strand, within Echvi_3695at 4402.861 kb on + strand, within Echvi_3695at 4402.862 kb on - strand, within Echvi_3695at 4402.862 kb on - strand, within Echvi_3695at 4402.862 kb on - strand, within Echvi_3695at 4402.869 kb on - strand, within Echvi_3695at 4402.881 kb on + strand, within Echvi_3695at 4402.936 kb on + strand, within Echvi_3695at 4402.937 kb on - strand, within Echvi_3695at 4402.937 kb on - strand, within Echvi_3695at 4403.028 kb on - strand, within Echvi_3695at 4403.029 kb on + strand, within Echvi_3695at 4403.029 kb on + strand, within Echvi_3695at 4403.029 kb on + strand, within Echvi_3695at 4403.029 kb on + strand, within Echvi_3695at 4403.050 kb on - strand, within Echvi_3695at 4403.054 kb on + strand, within Echvi_3695at 4403.086 kb on + strand, within Echvi_3695at 4403.086 kb on + strand, within Echvi_3695at 4403.087 kb on - strand, within Echvi_3695at 4403.088 kb on + strand, within Echvi_3695at 4403.088 kb on + strand, within Echvi_3695at 4403.089 kb on - strand, within Echvi_3695at 4403.094 kb on - strand, within Echvi_3695at 4403.094 kb on - strand, within Echvi_3695at 4403.123 kb on - strandat 4403.142 kb on + strandat 4403.145 kb on + strandat 4403.189 kb on + strandat 4403.189 kb on + strandat 4403.190 kb on - strandat 4403.201 kb on + strandat 4403.307 kb on - strand, within Echvi_3696at 4403.312 kb on + strand, within Echvi_3696at 4403.361 kb on + strand, within Echvi_3696at 4403.362 kb on - strand, within Echvi_3696at 4403.430 kb on + strand, within Echvi_3696at 4403.523 kb on + strand, within Echvi_3696at 4403.523 kb on + strand, within Echvi_3696at 4403.523 kb on + strand, within Echvi_3696at 4403.523 kb on + strand, within Echvi_3696at 4403.524 kb on - strand, within Echvi_3696at 4403.524 kb on - strand, within Echvi_3696at 4403.524 kb on - strand, within Echvi_3696at 4403.524 kb on - strand, within Echvi_3696at 4403.524 kb on - strand, within Echvi_3696at 4403.540 kb on + strand, within Echvi_3696at 4403.569 kb on - strandat 4403.569 kb on - strandat 4403.770 kb on - strandat 4403.877 kb on + strand, within Echvi_3697at 4403.879 kb on + strand, within Echvi_3697at 4403.880 kb on - strand, within Echvi_3697at 4403.883 kb on + strand, within Echvi_3697at 4403.884 kb on - strand, within Echvi_3697at 4403.920 kb on + strand, within Echvi_3697at 4403.931 kb on + strand, within Echvi_3697at 4403.931 kb on + strand, within Echvi_3697at 4404.000 kb on + strand, within Echvi_3697at 4404.000 kb on + strand, within Echvi_3697at 4404.001 kb on - strand, within Echvi_3697at 4404.001 kb on - strand, within Echvi_3697at 4404.003 kb on - strand, within Echvi_3697at 4404.065 kb on + strand, within Echvi_3697at 4404.104 kb on + strand, within Echvi_3697at 4404.112 kb on + strand, within Echvi_3697at 4404.113 kb on - strand, within Echvi_3697

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Per-strain Table

Position Strand Gene LocusTag Fraction Methyl-B-D-galactopyranoside 20mM (C)
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4,401,367 - Echvi_3693 0.71 +1.6
4,401,367 - Echvi_3693 0.71 +2.2
4,401,397 + Echvi_3693 0.73 -0.2
4,401,408 + Echvi_3693 0.73 -0.2
4,401,408 + Echvi_3693 0.73 +1.3
4,401,408 + Echvi_3693 0.73 -0.5
4,401,408 + Echvi_3693 0.73 +0.0
4,401,409 - Echvi_3693 0.73 +0.2
4,401,409 - Echvi_3693 0.73 +2.0
4,401,421 - Echvi_3693 0.73 -0.6
4,401,421 - Echvi_3693 0.73 -1.2
4,401,421 - Echvi_3693 0.73 -0.4
4,401,440 - Echvi_3693 0.74 -0.4
4,401,496 + Echvi_3693 0.76 +0.6
4,401,496 + Echvi_3693 0.76 +1.3
4,401,496 + Echvi_3693 0.76 +3.4
4,401,496 + Echvi_3693 0.76 +0.4
4,401,497 - Echvi_3693 0.77 -0.6
4,401,497 - Echvi_3693 0.77 +1.1
4,401,498 + Echvi_3693 0.77 -0.9
4,401,498 + Echvi_3693 0.77 +0.2
4,401,498 + Echvi_3693 0.77 -1.8
4,401,499 - Echvi_3693 0.77 -1.5
4,401,499 - Echvi_3693 0.77 -0.4
4,401,544 + Echvi_3693 0.78 -0.1
4,401,544 + Echvi_3693 0.78 -2.8
4,401,545 - Echvi_3693 0.78 -1.2
4,401,545 - Echvi_3693 0.78 +1.3
4,401,621 + Echvi_3693 0.81 +0.1
4,401,622 - Echvi_3693 0.82 -0.9
4,401,757 + Echvi_3693 0.87 +0.1
4,401,757 + Echvi_3693 0.87 +0.3
4,401,783 - Echvi_3693 0.88 -0.9
4,401,816 - Echvi_3693 0.89 +0.0
4,401,845 - +0.6
4,401,885 + -2.3
4,401,919 - -0.5
4,401,919 - +0.3
4,401,967 - -1.6
4,402,028 + -0.6
4,402,028 + -0.4
4,402,028 + -2.3
4,402,037 - -0.5
4,402,055 - +2.3
4,402,055 - +0.2
4,402,055 - -0.5
4,402,059 + -0.5
4,402,071 - -0.4
4,402,071 - -0.5
4,402,073 + -0.5
4,402,321 + Echvi_3694 0.61 -1.6
4,402,459 - Echvi_3695 0.15 +0.2
4,402,537 + Echvi_3695 0.24 +3.7
4,402,537 + Echvi_3695 0.24 +1.4
4,402,537 + Echvi_3695 0.24 +0.8
4,402,561 + Echvi_3695 0.27 -0.3
4,402,561 + Echvi_3695 0.27 +1.7
4,402,562 - Echvi_3695 0.27 +0.7
4,402,562 - Echvi_3695 0.27 -0.5
4,402,565 + Echvi_3695 0.27 -0.1
4,402,566 - Echvi_3695 0.28 +0.8
4,402,604 + Echvi_3695 0.32 -1.1
4,402,604 + Echvi_3695 0.32 -0.1
4,402,605 - Echvi_3695 0.32 +0.7
4,402,614 - Echvi_3695 0.33 -2.3
4,402,615 + Echvi_3695 0.33 +1.1
4,402,615 + Echvi_3695 0.33 +3.4
4,402,616 - Echvi_3695 0.33 -0.7
4,402,633 + Echvi_3695 0.35 +0.2
4,402,659 - Echvi_3695 0.39 -0.0
4,402,660 + Echvi_3695 0.39 -0.8
4,402,660 + Echvi_3695 0.39 -0.4
4,402,672 + Echvi_3695 0.40 +0.2
4,402,673 - Echvi_3695 0.40 -0.5
4,402,673 - Echvi_3695 0.40 +0.3
4,402,818 - Echvi_3695 0.57 +0.7
4,402,818 - Echvi_3695 0.57 +0.8
4,402,861 + Echvi_3695 0.62 +1.7
4,402,862 - Echvi_3695 0.62 -0.5
4,402,862 - Echvi_3695 0.62 +2.1
4,402,862 - Echvi_3695 0.62 +0.2
4,402,869 - Echvi_3695 0.63 +0.3
4,402,881 + Echvi_3695 0.65 +1.6
4,402,936 + Echvi_3695 0.71 -1.1
4,402,937 - Echvi_3695 0.71 -1.2
4,402,937 - Echvi_3695 0.71 +1.9
4,403,028 - Echvi_3695 0.82 -1.2
4,403,029 + Echvi_3695 0.82 +0.4
4,403,029 + Echvi_3695 0.82 -0.9
4,403,029 + Echvi_3695 0.82 +0.4
4,403,029 + Echvi_3695 0.82 +0.1
4,403,050 - Echvi_3695 0.85 +0.2
4,403,054 + Echvi_3695 0.85 -3.1
4,403,086 + Echvi_3695 0.89 -0.0
4,403,086 + Echvi_3695 0.89 -0.3
4,403,087 - Echvi_3695 0.89 +2.0
4,403,088 + Echvi_3695 0.89 -0.5
4,403,088 + Echvi_3695 0.89 +1.9
4,403,089 - Echvi_3695 0.89 -0.4
4,403,094 - Echvi_3695 0.90 -0.5
4,403,094 - Echvi_3695 0.90 -0.9
4,403,123 - +1.6
4,403,142 + -1.1
4,403,145 + +0.9
4,403,189 + -0.9
4,403,189 + -0.0
4,403,190 - +1.1
4,403,201 + +1.5
4,403,307 - Echvi_3696 0.16 -0.5
4,403,312 + Echvi_3696 0.18 -1.8
4,403,361 + Echvi_3696 0.32 +0.9
4,403,362 - Echvi_3696 0.32 -1.2
4,403,430 + Echvi_3696 0.51 -0.4
4,403,523 + Echvi_3696 0.77 +1.0
4,403,523 + Echvi_3696 0.77 -0.7
4,403,523 + Echvi_3696 0.77 +1.6
4,403,523 + Echvi_3696 0.77 -0.1
4,403,524 - Echvi_3696 0.78 +0.2
4,403,524 - Echvi_3696 0.78 -0.2
4,403,524 - Echvi_3696 0.78 -0.3
4,403,524 - Echvi_3696 0.78 +1.1
4,403,524 - Echvi_3696 0.78 +0.8
4,403,540 + Echvi_3696 0.82 -0.4
4,403,569 - +0.3
4,403,569 - -0.6
4,403,770 - +0.1
4,403,877 + Echvi_3697 0.18 +1.1
4,403,879 + Echvi_3697 0.18 -2.5
4,403,880 - Echvi_3697 0.18 +0.7
4,403,883 + Echvi_3697 0.19 -1.9
4,403,884 - Echvi_3697 0.19 -0.5
4,403,920 + Echvi_3697 0.23 +1.8
4,403,931 + Echvi_3697 0.24 -0.1
4,403,931 + Echvi_3697 0.24 +0.8
4,404,000 + Echvi_3697 0.31 -3.1
4,404,000 + Echvi_3697 0.31 +0.5
4,404,001 - Echvi_3697 0.31 -0.7
4,404,001 - Echvi_3697 0.31 +1.1
4,404,003 - Echvi_3697 0.31 -1.5
4,404,065 + Echvi_3697 0.38 +0.8
4,404,104 + Echvi_3697 0.42 +0.1
4,404,112 + Echvi_3697 0.43 -1.3
4,404,113 - Echvi_3697 0.43 -0.9

Or see this region's nucleotide sequence