Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2304

Experiment: Methyl-B-D-galactopyranoside 20mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2303 and Echvi_2304 are separated by 9 nucleotidesEchvi_2304 and Echvi_2305 are separated by 180 nucleotides Echvi_2303: Echvi_2303 - hypothetical protein, at 2,735,323 to 2,736,792 _2303 Echvi_2304: Echvi_2304 - ABC-type multidrug transport system, ATPase component, at 2,736,802 to 2,737,521 _2304 Echvi_2305: Echvi_2305 - Protease II, at 2,737,702 to 2,739,774 _2305 Position (kb) 2736 2737 2738Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2735.852 kb on + strand, within Echvi_2303at 2735.867 kb on - strand, within Echvi_2303at 2735.893 kb on + strand, within Echvi_2303at 2735.894 kb on - strand, within Echvi_2303at 2735.894 kb on - strand, within Echvi_2303at 2735.894 kb on - strand, within Echvi_2303at 2736.007 kb on + strand, within Echvi_2303at 2736.111 kb on + strand, within Echvi_2303at 2736.111 kb on + strand, within Echvi_2303at 2736.111 kb on + strand, within Echvi_2303at 2736.111 kb on + strand, within Echvi_2303at 2736.111 kb on + strand, within Echvi_2303at 2736.112 kb on - strand, within Echvi_2303at 2736.211 kb on + strand, within Echvi_2303at 2736.212 kb on - strand, within Echvi_2303at 2736.283 kb on + strand, within Echvi_2303at 2736.283 kb on + strand, within Echvi_2303at 2736.284 kb on - strand, within Echvi_2303at 2736.300 kb on + strand, within Echvi_2303at 2736.307 kb on + strand, within Echvi_2303at 2736.307 kb on + strand, within Echvi_2303at 2736.307 kb on + strand, within Echvi_2303at 2736.308 kb on - strand, within Echvi_2303at 2736.308 kb on - strand, within Echvi_2303at 2736.350 kb on - strand, within Echvi_2303at 2736.350 kb on - strand, within Echvi_2303at 2736.381 kb on - strand, within Echvi_2303at 2736.381 kb on - strand, within Echvi_2303at 2736.415 kb on + strand, within Echvi_2303at 2736.415 kb on + strand, within Echvi_2303at 2736.415 kb on + strand, within Echvi_2303at 2736.422 kb on - strand, within Echvi_2303at 2736.439 kb on + strand, within Echvi_2303at 2736.466 kb on + strand, within Echvi_2303at 2736.466 kb on + strand, within Echvi_2303at 2736.466 kb on + strand, within Echvi_2303at 2736.467 kb on - strand, within Echvi_2303at 2736.467 kb on - strand, within Echvi_2303at 2736.468 kb on + strand, within Echvi_2303at 2736.487 kb on + strand, within Echvi_2303at 2736.488 kb on - strand, within Echvi_2303at 2736.488 kb on - strand, within Echvi_2303at 2736.488 kb on - strand, within Echvi_2303at 2736.490 kb on - strand, within Echvi_2303at 2736.608 kb on + strand, within Echvi_2303at 2736.612 kb on - strand, within Echvi_2303at 2736.626 kb on + strand, within Echvi_2303at 2736.626 kb on + strand, within Echvi_2303at 2736.626 kb on + strand, within Echvi_2303at 2736.627 kb on - strand, within Echvi_2303at 2736.627 kb on - strand, within Echvi_2303at 2736.627 kb on - strand, within Echvi_2303at 2736.627 kb on - strand, within Echvi_2303at 2736.628 kb on + strand, within Echvi_2303at 2736.628 kb on + strand, within Echvi_2303at 2736.628 kb on + strand, within Echvi_2303at 2736.629 kb on - strand, within Echvi_2303at 2736.629 kb on - strand, within Echvi_2303at 2736.629 kb on - strand, within Echvi_2303at 2736.629 kb on - strand, within Echvi_2303at 2736.645 kb on + strand, within Echvi_2303at 2736.646 kb on - strandat 2736.650 kb on + strandat 2736.651 kb on - strandat 2736.651 kb on - strandat 2736.658 kb on + strandat 2736.658 kb on + strandat 2736.667 kb on + strandat 2736.758 kb on - strandat 2736.802 kb on - strandat 2736.812 kb on + strandat 2736.833 kb on - strandat 2736.906 kb on + strand, within Echvi_2304at 2736.933 kb on + strand, within Echvi_2304at 2736.951 kb on + strand, within Echvi_2304at 2736.974 kb on + strand, within Echvi_2304at 2736.974 kb on + strand, within Echvi_2304at 2736.975 kb on - strand, within Echvi_2304at 2736.977 kb on + strand, within Echvi_2304at 2736.978 kb on - strand, within Echvi_2304at 2736.989 kb on + strand, within Echvi_2304at 2736.990 kb on - strand, within Echvi_2304at 2736.990 kb on - strand, within Echvi_2304at 2737.021 kb on + strand, within Echvi_2304at 2737.022 kb on - strand, within Echvi_2304at 2737.022 kb on - strand, within Echvi_2304at 2737.022 kb on - strand, within Echvi_2304at 2737.023 kb on + strand, within Echvi_2304at 2737.036 kb on - strand, within Echvi_2304at 2737.060 kb on + strand, within Echvi_2304at 2737.084 kb on + strand, within Echvi_2304at 2737.091 kb on + strand, within Echvi_2304at 2737.199 kb on + strand, within Echvi_2304at 2737.259 kb on + strand, within Echvi_2304at 2737.259 kb on + strand, within Echvi_2304at 2737.259 kb on + strand, within Echvi_2304at 2737.260 kb on - strand, within Echvi_2304at 2737.260 kb on - strand, within Echvi_2304at 2737.260 kb on - strand, within Echvi_2304at 2737.290 kb on - strand, within Echvi_2304at 2737.296 kb on + strand, within Echvi_2304at 2737.297 kb on - strand, within Echvi_2304at 2737.333 kb on + strand, within Echvi_2304at 2737.333 kb on + strand, within Echvi_2304at 2737.444 kb on - strand, within Echvi_2304at 2737.446 kb on + strand, within Echvi_2304at 2737.447 kb on - strand, within Echvi_2304at 2737.573 kb on - strandat 2737.579 kb on + strandat 2737.604 kb on + strandat 2737.616 kb on - strandat 2737.640 kb on - strandat 2737.667 kb on + strandat 2737.668 kb on - strandat 2737.678 kb on + strandat 2737.679 kb on - strandat 2737.679 kb on - strandat 2737.679 kb on - strandat 2737.679 kb on - strandat 2737.825 kb on - strandat 2737.831 kb on + strandat 2737.832 kb on - strandat 2737.832 kb on - strandat 2737.885 kb on - strandat 2737.926 kb on + strand, within Echvi_2305at 2737.927 kb on - strand, within Echvi_2305at 2737.943 kb on + strand, within Echvi_2305at 2737.976 kb on + strand, within Echvi_2305at 2737.977 kb on - strand, within Echvi_2305at 2737.988 kb on + strand, within Echvi_2305at 2737.988 kb on + strand, within Echvi_2305at 2737.988 kb on + strand, within Echvi_2305at 2737.995 kb on - strand, within Echvi_2305at 2737.995 kb on - strand, within Echvi_2305at 2738.070 kb on + strand, within Echvi_2305at 2738.182 kb on + strand, within Echvi_2305at 2738.183 kb on - strand, within Echvi_2305at 2738.201 kb on + strand, within Echvi_2305at 2738.201 kb on + strand, within Echvi_2305at 2738.202 kb on - strand, within Echvi_2305at 2738.202 kb on - strand, within Echvi_2305at 2738.250 kb on + strand, within Echvi_2305at 2738.251 kb on - strand, within Echvi_2305at 2738.347 kb on + strand, within Echvi_2305at 2738.351 kb on - strand, within Echvi_2305at 2738.386 kb on - strand, within Echvi_2305at 2738.449 kb on - strand, within Echvi_2305at 2738.459 kb on + strand, within Echvi_2305at 2738.460 kb on - strand, within Echvi_2305at 2738.460 kb on - strand, within Echvi_2305at 2738.460 kb on - strand, within Echvi_2305at 2738.472 kb on + strand, within Echvi_2305at 2738.472 kb on + strand, within Echvi_2305at 2738.473 kb on - strand, within Echvi_2305

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Per-strain Table

Position Strand Gene LocusTag Fraction Methyl-B-D-galactopyranoside 20mM (C)
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2,735,852 + Echvi_2303 0.36 -1.5
2,735,867 - Echvi_2303 0.37 +0.6
2,735,893 + Echvi_2303 0.39 -1.8
2,735,894 - Echvi_2303 0.39 -1.6
2,735,894 - Echvi_2303 0.39 +0.7
2,735,894 - Echvi_2303 0.39 +0.3
2,736,007 + Echvi_2303 0.47 +0.4
2,736,111 + Echvi_2303 0.54 -1.5
2,736,111 + Echvi_2303 0.54 -1.1
2,736,111 + Echvi_2303 0.54 -0.6
2,736,111 + Echvi_2303 0.54 -1.1
2,736,111 + Echvi_2303 0.54 -0.3
2,736,112 - Echvi_2303 0.54 +1.6
2,736,211 + Echvi_2303 0.60 -0.7
2,736,212 - Echvi_2303 0.60 +1.1
2,736,283 + Echvi_2303 0.65 +2.2
2,736,283 + Echvi_2303 0.65 +1.0
2,736,284 - Echvi_2303 0.65 -1.7
2,736,300 + Echvi_2303 0.66 -1.4
2,736,307 + Echvi_2303 0.67 +0.5
2,736,307 + Echvi_2303 0.67 -1.4
2,736,307 + Echvi_2303 0.67 +0.8
2,736,308 - Echvi_2303 0.67 +1.8
2,736,308 - Echvi_2303 0.67 +2.2
2,736,350 - Echvi_2303 0.70 +1.6
2,736,350 - Echvi_2303 0.70 -0.7
2,736,381 - Echvi_2303 0.72 +0.6
2,736,381 - Echvi_2303 0.72 +0.7
2,736,415 + Echvi_2303 0.74 +0.1
2,736,415 + Echvi_2303 0.74 +1.1
2,736,415 + Echvi_2303 0.74 +1.9
2,736,422 - Echvi_2303 0.75 +1.3
2,736,439 + Echvi_2303 0.76 +0.6
2,736,466 + Echvi_2303 0.78 -0.5
2,736,466 + Echvi_2303 0.78 +3.6
2,736,466 + Echvi_2303 0.78 +3.3
2,736,467 - Echvi_2303 0.78 -2.3
2,736,467 - Echvi_2303 0.78 -1.0
2,736,468 + Echvi_2303 0.78 -0.7
2,736,487 + Echvi_2303 0.79 -0.4
2,736,488 - Echvi_2303 0.79 -0.6
2,736,488 - Echvi_2303 0.79 -1.5
2,736,488 - Echvi_2303 0.79 -0.4
2,736,490 - Echvi_2303 0.79 -0.3
2,736,608 + Echvi_2303 0.87 -0.1
2,736,612 - Echvi_2303 0.88 +2.3
2,736,626 + Echvi_2303 0.89 +0.9
2,736,626 + Echvi_2303 0.89 -0.1
2,736,626 + Echvi_2303 0.89 -0.2
2,736,627 - Echvi_2303 0.89 +0.1
2,736,627 - Echvi_2303 0.89 +0.6
2,736,627 - Echvi_2303 0.89 +0.5
2,736,627 - Echvi_2303 0.89 -0.9
2,736,628 + Echvi_2303 0.89 +0.9
2,736,628 + Echvi_2303 0.89 -0.7
2,736,628 + Echvi_2303 0.89 +0.8
2,736,629 - Echvi_2303 0.89 -0.5
2,736,629 - Echvi_2303 0.89 +1.6
2,736,629 - Echvi_2303 0.89 -1.5
2,736,629 - Echvi_2303 0.89 +2.1
2,736,645 + Echvi_2303 0.90 +0.5
2,736,646 - -1.0
2,736,650 + +0.5
2,736,651 - -0.6
2,736,651 - +0.8
2,736,658 + -2.2
2,736,658 + -0.3
2,736,667 + -0.1
2,736,758 - +0.4
2,736,802 - +0.7
2,736,812 + +1.5
2,736,833 - -0.4
2,736,906 + Echvi_2304 0.14 +1.0
2,736,933 + Echvi_2304 0.18 +0.2
2,736,951 + Echvi_2304 0.21 -0.2
2,736,974 + Echvi_2304 0.24 -0.1
2,736,974 + Echvi_2304 0.24 +0.0
2,736,975 - Echvi_2304 0.24 +0.6
2,736,977 + Echvi_2304 0.24 +0.9
2,736,978 - Echvi_2304 0.24 -0.1
2,736,989 + Echvi_2304 0.26 -0.2
2,736,990 - Echvi_2304 0.26 +0.9
2,736,990 - Echvi_2304 0.26 -0.3
2,737,021 + Echvi_2304 0.30 +2.5
2,737,022 - Echvi_2304 0.31 +1.5
2,737,022 - Echvi_2304 0.31 -1.1
2,737,022 - Echvi_2304 0.31 +0.5
2,737,023 + Echvi_2304 0.31 +0.7
2,737,036 - Echvi_2304 0.33 -1.4
2,737,060 + Echvi_2304 0.36 -0.0
2,737,084 + Echvi_2304 0.39 +0.3
2,737,091 + Echvi_2304 0.40 +0.3
2,737,199 + Echvi_2304 0.55 +0.8
2,737,259 + Echvi_2304 0.63 +1.3
2,737,259 + Echvi_2304 0.63 +1.1
2,737,259 + Echvi_2304 0.63 +0.0
2,737,260 - Echvi_2304 0.64 -1.4
2,737,260 - Echvi_2304 0.64 -0.4
2,737,260 - Echvi_2304 0.64 -0.2
2,737,290 - Echvi_2304 0.68 +3.3
2,737,296 + Echvi_2304 0.69 +2.4
2,737,297 - Echvi_2304 0.69 +1.2
2,737,333 + Echvi_2304 0.74 -0.6
2,737,333 + Echvi_2304 0.74 +1.5
2,737,444 - Echvi_2304 0.89 +0.1
2,737,446 + Echvi_2304 0.89 +1.3
2,737,447 - Echvi_2304 0.90 -0.3
2,737,573 - +2.3
2,737,579 + -0.0
2,737,604 + +0.6
2,737,616 - +0.1
2,737,640 - -0.3
2,737,667 + +0.2
2,737,668 - +0.4
2,737,678 + +1.5
2,737,679 - -0.3
2,737,679 - +0.4
2,737,679 - +2.8
2,737,679 - +0.0
2,737,825 - +0.3
2,737,831 + +0.7
2,737,832 - -1.5
2,737,832 - -1.3
2,737,885 - +0.5
2,737,926 + Echvi_2305 0.11 +0.4
2,737,927 - Echvi_2305 0.11 +1.5
2,737,943 + Echvi_2305 0.12 +0.7
2,737,976 + Echvi_2305 0.13 -0.3
2,737,977 - Echvi_2305 0.13 -0.6
2,737,988 + Echvi_2305 0.14 -0.9
2,737,988 + Echvi_2305 0.14 -1.9
2,737,988 + Echvi_2305 0.14 +0.5
2,737,995 - Echvi_2305 0.14 +0.3
2,737,995 - Echvi_2305 0.14 -1.5
2,738,070 + Echvi_2305 0.18 +0.3
2,738,182 + Echvi_2305 0.23 +0.2
2,738,183 - Echvi_2305 0.23 +1.4
2,738,201 + Echvi_2305 0.24 -1.0
2,738,201 + Echvi_2305 0.24 -0.1
2,738,202 - Echvi_2305 0.24 -2.2
2,738,202 - Echvi_2305 0.24 -0.2
2,738,250 + Echvi_2305 0.26 -0.2
2,738,251 - Echvi_2305 0.26 +0.7
2,738,347 + Echvi_2305 0.31 +0.1
2,738,351 - Echvi_2305 0.31 +1.5
2,738,386 - Echvi_2305 0.33 -0.2
2,738,449 - Echvi_2305 0.36 +0.5
2,738,459 + Echvi_2305 0.37 -0.6
2,738,460 - Echvi_2305 0.37 +0.9
2,738,460 - Echvi_2305 0.37 +0.1
2,738,460 - Echvi_2305 0.37 -0.2
2,738,472 + Echvi_2305 0.37 +1.2
2,738,472 + Echvi_2305 0.37 +0.4
2,738,473 - Echvi_2305 0.37 +0.1

Or see this region's nucleotide sequence