Experiment: Methyl-B-D-galactopyranoside 20mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1673 and Echvi_1674 are separated by 521 nucleotides Echvi_1674 and Echvi_1675 are separated by 80 nucleotides
Echvi_1673: Echvi_1673 - SusD family., at 1,953,213 to 1,954,856
_1673
Echvi_1674: Echvi_1674 - TonB-linked outer membrane protein, SusC/RagA family, at 1,955,378 to 1,958,392
_1674
Echvi_1675: Echvi_1675 - SusD family., at 1,958,473 to 1,959,969
_1675
Position (kb)
1955
1956
1957
1958
1959 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1954.391 kb on + strand, within Echvi_1673 at 1954.420 kb on - strand, within Echvi_1673 at 1954.424 kb on + strand, within Echvi_1673 at 1954.424 kb on + strand, within Echvi_1673 at 1954.424 kb on + strand, within Echvi_1673 at 1954.425 kb on - strand, within Echvi_1673 at 1954.425 kb on - strand, within Echvi_1673 at 1954.425 kb on - strand, within Echvi_1673 at 1954.473 kb on + strand, within Echvi_1673 at 1954.474 kb on - strand, within Echvi_1673 at 1954.478 kb on + strand, within Echvi_1673 at 1954.478 kb on + strand, within Echvi_1673 at 1954.479 kb on - strand, within Echvi_1673 at 1954.495 kb on + strand, within Echvi_1673 at 1954.496 kb on - strand, within Echvi_1673 at 1954.496 kb on - strand, within Echvi_1673 at 1954.496 kb on - strand, within Echvi_1673 at 1954.496 kb on - strand, within Echvi_1673 at 1954.496 kb on - strand, within Echvi_1673 at 1954.496 kb on - strand, within Echvi_1673 at 1954.497 kb on + strand, within Echvi_1673 at 1954.497 kb on + strand, within Echvi_1673 at 1954.497 kb on + strand, within Echvi_1673 at 1954.497 kb on + strand, within Echvi_1673 at 1954.521 kb on + strand, within Echvi_1673 at 1954.521 kb on + strand, within Echvi_1673 at 1954.542 kb on + strand, within Echvi_1673 at 1954.580 kb on + strand, within Echvi_1673 at 1954.646 kb on + strand, within Echvi_1673 at 1954.647 kb on - strand, within Echvi_1673 at 1954.724 kb on - strand at 1954.724 kb on - strand at 1954.740 kb on + strand at 1954.807 kb on + strand at 1954.807 kb on + strand at 1954.807 kb on + strand at 1954.807 kb on + strand at 1954.808 kb on - strand at 1954.820 kb on - strand at 1954.820 kb on - strand at 1954.849 kb on - strand at 1954.852 kb on + strand at 1954.882 kb on - strand at 1954.916 kb on - strand at 1954.916 kb on - strand at 1954.979 kb on - strand at 1954.983 kb on + strand at 1954.983 kb on + strand at 1955.064 kb on - strand at 1955.070 kb on - strand at 1955.111 kb on - strand at 1955.138 kb on - strand at 1955.143 kb on - strand at 1955.156 kb on + strand at 1955.167 kb on + strand at 1955.181 kb on + strand at 1955.182 kb on - strand at 1955.202 kb on - strand at 1955.378 kb on - strand at 1955.391 kb on + strand at 1955.392 kb on - strand at 1955.456 kb on - strand at 1955.569 kb on + strand at 1955.642 kb on - strand at 1955.642 kb on - strand at 1955.713 kb on - strand, within Echvi_1674 at 1955.713 kb on - strand, within Echvi_1674 at 1955.755 kb on - strand, within Echvi_1674 at 1955.755 kb on - strand, within Echvi_1674 at 1955.755 kb on - strand, within Echvi_1674 at 1955.880 kb on + strand, within Echvi_1674 at 1955.881 kb on - strand, within Echvi_1674 at 1955.881 kb on - strand, within Echvi_1674 at 1955.938 kb on + strand, within Echvi_1674 at 1956.056 kb on - strand, within Echvi_1674 at 1956.064 kb on + strand, within Echvi_1674 at 1956.131 kb on + strand, within Echvi_1674 at 1956.251 kb on - strand, within Echvi_1674 at 1956.253 kb on + strand, within Echvi_1674 at 1956.254 kb on - strand, within Echvi_1674 at 1956.269 kb on + strand, within Echvi_1674 at 1956.324 kb on + strand, within Echvi_1674 at 1956.324 kb on + strand, within Echvi_1674 at 1956.325 kb on - strand, within Echvi_1674 at 1956.376 kb on - strand, within Echvi_1674 at 1956.407 kb on + strand, within Echvi_1674 at 1956.447 kb on + strand, within Echvi_1674 at 1956.470 kb on + strand, within Echvi_1674 at 1956.482 kb on + strand, within Echvi_1674 at 1956.483 kb on - strand, within Echvi_1674 at 1956.483 kb on - strand, within Echvi_1674 at 1956.484 kb on + strand, within Echvi_1674 at 1956.677 kb on + strand, within Echvi_1674 at 1956.740 kb on + strand, within Echvi_1674 at 1956.740 kb on + strand, within Echvi_1674 at 1956.754 kb on + strand, within Echvi_1674 at 1956.755 kb on - strand, within Echvi_1674 at 1956.755 kb on - strand, within Echvi_1674 at 1956.766 kb on + strand, within Echvi_1674 at 1956.768 kb on + strand, within Echvi_1674 at 1956.769 kb on - strand, within Echvi_1674 at 1956.826 kb on + strand, within Echvi_1674 at 1956.829 kb on - strand, within Echvi_1674 at 1956.938 kb on - strand, within Echvi_1674 at 1956.966 kb on - strand, within Echvi_1674 at 1957.026 kb on - strand, within Echvi_1674 at 1957.028 kb on - strand, within Echvi_1674 at 1957.028 kb on - strand, within Echvi_1674 at 1957.034 kb on + strand, within Echvi_1674 at 1957.035 kb on - strand, within Echvi_1674 at 1957.045 kb on + strand, within Echvi_1674 at 1957.045 kb on + strand, within Echvi_1674 at 1957.119 kb on + strand, within Echvi_1674 at 1957.119 kb on + strand, within Echvi_1674 at 1957.119 kb on + strand, within Echvi_1674 at 1957.120 kb on - strand, within Echvi_1674 at 1957.120 kb on - strand, within Echvi_1674 at 1957.144 kb on + strand, within Echvi_1674 at 1957.155 kb on + strand, within Echvi_1674 at 1957.155 kb on + strand, within Echvi_1674 at 1957.155 kb on + strand, within Echvi_1674 at 1957.155 kb on + strand, within Echvi_1674 at 1957.156 kb on - strand, within Echvi_1674 at 1957.259 kb on + strand, within Echvi_1674 at 1957.265 kb on + strand, within Echvi_1674 at 1957.367 kb on - strand, within Echvi_1674 at 1957.409 kb on + strand, within Echvi_1674 at 1957.524 kb on + strand, within Echvi_1674 at 1957.525 kb on - strand, within Echvi_1674 at 1957.722 kb on - strand, within Echvi_1674 at 1957.746 kb on - strand, within Echvi_1674 at 1957.892 kb on + strand, within Echvi_1674 at 1957.993 kb on - strand, within Echvi_1674 at 1958.158 kb on + strand at 1958.160 kb on + strand at 1958.161 kb on - strand at 1958.268 kb on - strand at 1958.268 kb on - strand at 1958.376 kb on + strand at 1958.377 kb on - strand at 1958.377 kb on - strand at 1958.377 kb on - strand at 1958.433 kb on + strand at 1958.433 kb on + strand at 1958.434 kb on - strand at 1958.434 kb on - strand at 1958.434 kb on - strand at 1958.441 kb on - strand at 1958.452 kb on + strand at 1958.489 kb on + strand at 1958.489 kb on + strand at 1958.490 kb on - strand at 1958.490 kb on - strand at 1958.493 kb on - strand at 1958.493 kb on - strand at 1958.496 kb on + strand at 1958.647 kb on + strand, within Echvi_1675 at 1958.648 kb on - strand, within Echvi_1675 at 1958.648 kb on - strand, within Echvi_1675 at 1958.648 kb on - strand, within Echvi_1675 at 1958.788 kb on + strand, within Echvi_1675 at 1958.789 kb on - strand, within Echvi_1675 at 1958.789 kb on - strand, within Echvi_1675 at 1958.843 kb on + strand, within Echvi_1675 at 1958.843 kb on + strand, within Echvi_1675 at 1958.859 kb on + strand, within Echvi_1675
Per-strain Table
Position Strand Gene LocusTag Fraction Methyl-B-D-galactopyranoside 20mM (C) remove 1,954,391 + Echvi_1673 0.72 -0.8 1,954,420 - Echvi_1673 0.73 +0.5 1,954,424 + Echvi_1673 0.74 -0.1 1,954,424 + Echvi_1673 0.74 -0.3 1,954,424 + Echvi_1673 0.74 +0.2 1,954,425 - Echvi_1673 0.74 -0.4 1,954,425 - Echvi_1673 0.74 -1.7 1,954,425 - Echvi_1673 0.74 +1.1 1,954,473 + Echvi_1673 0.77 +0.9 1,954,474 - Echvi_1673 0.77 +0.2 1,954,478 + Echvi_1673 0.77 -1.5 1,954,478 + Echvi_1673 0.77 -0.3 1,954,479 - Echvi_1673 0.77 +0.5 1,954,495 + Echvi_1673 0.78 +0.1 1,954,496 - Echvi_1673 0.78 +1.1 1,954,496 - Echvi_1673 0.78 +0.4 1,954,496 - Echvi_1673 0.78 -1.4 1,954,496 - Echvi_1673 0.78 +0.5 1,954,496 - Echvi_1673 0.78 -0.2 1,954,496 - Echvi_1673 0.78 -0.6 1,954,497 + Echvi_1673 0.78 -0.4 1,954,497 + Echvi_1673 0.78 -1.3 1,954,497 + Echvi_1673 0.78 -0.3 1,954,497 + Echvi_1673 0.78 -0.9 1,954,521 + Echvi_1673 0.80 +3.6 1,954,521 + Echvi_1673 0.80 -1.5 1,954,542 + Echvi_1673 0.81 +1.6 1,954,580 + Echvi_1673 0.83 +0.0 1,954,646 + Echvi_1673 0.87 +0.1 1,954,647 - Echvi_1673 0.87 +0.3 1,954,724 - +0.1 1,954,724 - +0.6 1,954,740 + -0.2 1,954,807 + -0.6 1,954,807 + -0.1 1,954,807 + +0.5 1,954,807 + -1.9 1,954,808 - +1.3 1,954,820 - -1.6 1,954,820 - -0.4 1,954,849 - +0.2 1,954,852 + -1.5 1,954,882 - +0.5 1,954,916 - -1.1 1,954,916 - -1.6 1,954,979 - -1.6 1,954,983 + +0.3 1,954,983 + +0.1 1,955,064 - +0.3 1,955,070 - -0.1 1,955,111 - -0.3 1,955,138 - -0.2 1,955,143 - -1.1 1,955,156 + -0.6 1,955,167 + +0.2 1,955,181 + -0.2 1,955,182 - -0.3 1,955,202 - +0.5 1,955,378 - +0.3 1,955,391 + -0.9 1,955,392 - +0.4 1,955,456 - +2.1 1,955,569 + +0.1 1,955,642 - -0.5 1,955,642 - +1.2 1,955,713 - Echvi_1674 0.11 -1.0 1,955,713 - Echvi_1674 0.11 -0.4 1,955,755 - Echvi_1674 0.13 -0.4 1,955,755 - Echvi_1674 0.13 -1.0 1,955,755 - Echvi_1674 0.13 +2.9 1,955,880 + Echvi_1674 0.17 +0.4 1,955,881 - Echvi_1674 0.17 +2.3 1,955,881 - Echvi_1674 0.17 +0.1 1,955,938 + Echvi_1674 0.19 +0.1 1,956,056 - Echvi_1674 0.22 -0.5 1,956,064 + Echvi_1674 0.23 -1.9 1,956,131 + Echvi_1674 0.25 -1.1 1,956,251 - Echvi_1674 0.29 +0.7 1,956,253 + Echvi_1674 0.29 +1.3 1,956,254 - Echvi_1674 0.29 +1.3 1,956,269 + Echvi_1674 0.30 -1.9 1,956,324 + Echvi_1674 0.31 -0.2 1,956,324 + Echvi_1674 0.31 -0.0 1,956,325 - Echvi_1674 0.31 -0.3 1,956,376 - Echvi_1674 0.33 -1.6 1,956,407 + Echvi_1674 0.34 -0.5 1,956,447 + Echvi_1674 0.35 -0.6 1,956,470 + Echvi_1674 0.36 -0.1 1,956,482 + Echvi_1674 0.37 -1.3 1,956,483 - Echvi_1674 0.37 -1.6 1,956,483 - Echvi_1674 0.37 -0.8 1,956,484 + Echvi_1674 0.37 +0.3 1,956,677 + Echvi_1674 0.43 -1.0 1,956,740 + Echvi_1674 0.45 -1.1 1,956,740 + Echvi_1674 0.45 -0.3 1,956,754 + Echvi_1674 0.46 -0.6 1,956,755 - Echvi_1674 0.46 +0.5 1,956,755 - Echvi_1674 0.46 +0.6 1,956,766 + Echvi_1674 0.46 -0.5 1,956,768 + Echvi_1674 0.46 -1.6 1,956,769 - Echvi_1674 0.46 -0.9 1,956,826 + Echvi_1674 0.48 -1.0 1,956,829 - Echvi_1674 0.48 -0.3 1,956,938 - Echvi_1674 0.52 -0.7 1,956,966 - Echvi_1674 0.53 -2.1 1,957,026 - Echvi_1674 0.55 -1.0 1,957,028 - Echvi_1674 0.55 -0.5 1,957,028 - Echvi_1674 0.55 +0.2 1,957,034 + Echvi_1674 0.55 -0.1 1,957,035 - Echvi_1674 0.55 -1.5 1,957,045 + Echvi_1674 0.55 -0.1 1,957,045 + Echvi_1674 0.55 +2.2 1,957,119 + Echvi_1674 0.58 -0.3 1,957,119 + Echvi_1674 0.58 -1.9 1,957,119 + Echvi_1674 0.58 -2.3 1,957,120 - Echvi_1674 0.58 +0.5 1,957,120 - Echvi_1674 0.58 +0.7 1,957,144 + Echvi_1674 0.59 -0.6 1,957,155 + Echvi_1674 0.59 -0.9 1,957,155 + Echvi_1674 0.59 +3.9 1,957,155 + Echvi_1674 0.59 +1.3 1,957,155 + Echvi_1674 0.59 -2.9 1,957,156 - Echvi_1674 0.59 -0.5 1,957,259 + Echvi_1674 0.62 +0.3 1,957,265 + Echvi_1674 0.63 +2.3 1,957,367 - Echvi_1674 0.66 -1.1 1,957,409 + Echvi_1674 0.67 +0.0 1,957,524 + Echvi_1674 0.71 -0.3 1,957,525 - Echvi_1674 0.71 -3.2 1,957,722 - Echvi_1674 0.78 -2.9 1,957,746 - Echvi_1674 0.79 -0.3 1,957,892 + Echvi_1674 0.83 -0.3 1,957,993 - Echvi_1674 0.87 +0.8 1,958,158 + -0.4 1,958,160 + +1.1 1,958,161 - +0.4 1,958,268 - +0.1 1,958,268 - -0.0 1,958,376 + +0.4 1,958,377 - +2.1 1,958,377 - +0.1 1,958,377 - -0.4 1,958,433 + -1.5 1,958,433 + -2.0 1,958,434 - -1.4 1,958,434 - -0.7 1,958,434 - -0.9 1,958,441 - -1.5 1,958,452 + -0.0 1,958,489 + -2.8 1,958,489 + +0.2 1,958,490 - -0.2 1,958,490 - -1.0 1,958,493 - -0.4 1,958,493 - -1.1 1,958,496 + -1.3 1,958,647 + Echvi_1675 0.12 -2.1 1,958,648 - Echvi_1675 0.12 +1.2 1,958,648 - Echvi_1675 0.12 -1.8 1,958,648 - Echvi_1675 0.12 +0.2 1,958,788 + Echvi_1675 0.21 -1.0 1,958,789 - Echvi_1675 0.21 +3.8 1,958,789 - Echvi_1675 0.21 +1.0 1,958,843 + Echvi_1675 0.25 -0.8 1,958,843 + Echvi_1675 0.25 +1.3 1,958,859 + Echvi_1675 0.26 -0.1
Or see this region's nucleotide sequence