Experiment: R2A with bromate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6097 and Atu6098 overlap by 4 nucleotides Atu6098 and Atu6099 are separated by 380 nucleotides Atu6099 and Atu6100 are separated by 11 nucleotides Atu6100 and Atu6101 are separated by 128 nucleotides
Atu6097: Atu6097 - cell filamentation protein, at 117,878 to 118,474
Atu6097
Atu6098: Atu6098 - transcriptional regulator, HTH family, at 118,471 to 118,932
Atu6098
Atu6099: Atu6099 - conserved hypothetical protein, at 119,313 to 119,915
Atu6099
Atu6100: Atu6100 - conserved hypothetical protein, at 119,927 to 120,328
Atu6100
Atu6101: Atu6101 - helicase, SNF2 family, at 120,457 to 125,538
Atu6101
Position (kb) 119
120 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 118.331 kb on + strand, within Atu6097 at 118.400 kb on + strand, within Atu6097 at 118.411 kb on + strand, within Atu6097 at 118.423 kb on + strand at 118.423 kb on + strand at 118.423 kb on + strand at 118.428 kb on + strand at 118.431 kb on - strand at 118.431 kb on - strand at 118.431 kb on - strand at 118.431 kb on - strand at 118.436 kb on - strand at 118.438 kb on + strand at 118.446 kb on - strand at 118.446 kb on - strand at 118.513 kb on + strand at 118.513 kb on + strand at 118.858 kb on - strand, within Atu6098 at 118.947 kb on - strand at 119.092 kb on + strand at 119.167 kb on + strand at 119.167 kb on + strand at 119.175 kb on - strand at 119.191 kb on + strand at 119.248 kb on - strand at 119.295 kb on + strand at 119.397 kb on + strand, within Atu6099 at 119.397 kb on + strand, within Atu6099 at 119.405 kb on - strand, within Atu6099 at 119.455 kb on - strand, within Atu6099 at 119.642 kb on + strand, within Atu6099 at 119.706 kb on - strand, within Atu6099 at 119.722 kb on - strand, within Atu6099 at 119.736 kb on - strand, within Atu6099 at 119.736 kb on - strand, within Atu6099 at 119.736 kb on - strand, within Atu6099 at 119.798 kb on + strand, within Atu6099 at 119.801 kb on - strand, within Atu6099 at 119.806 kb on - strand, within Atu6099 at 119.806 kb on - strand, within Atu6099 at 119.811 kb on + strand, within Atu6099 at 119.819 kb on - strand, within Atu6099 at 119.824 kb on + strand, within Atu6099 at 119.824 kb on + strand, within Atu6099 at 119.824 kb on + strand, within Atu6099 at 119.824 kb on + strand, within Atu6099 at 119.824 kb on + strand, within Atu6099 at 119.832 kb on - strand, within Atu6099 at 119.832 kb on - strand, within Atu6099 at 119.832 kb on - strand, within Atu6099 at 119.871 kb on - strand at 119.968 kb on - strand, within Atu6100 at 119.978 kb on - strand, within Atu6100 at 119.985 kb on - strand, within Atu6100 at 119.985 kb on - strand, within Atu6100 at 120.085 kb on - strand, within Atu6100 at 120.105 kb on + strand, within Atu6100 at 120.105 kb on + strand, within Atu6100 at 120.105 kb on + strand, within Atu6100 at 120.113 kb on - strand, within Atu6100 at 120.113 kb on - strand, within Atu6100 at 120.140 kb on - strand, within Atu6100 at 120.162 kb on - strand, within Atu6100 at 120.162 kb on - strand, within Atu6100 at 120.254 kb on + strand, within Atu6100 at 120.262 kb on - strand, within Atu6100 at 120.269 kb on + strand, within Atu6100 at 120.269 kb on + strand, within Atu6100 at 120.269 kb on + strand, within Atu6100 at 120.277 kb on - strand, within Atu6100 at 120.277 kb on - strand, within Atu6100 at 120.323 kb on + strand at 120.376 kb on + strand at 120.384 kb on - strand at 120.492 kb on + strand at 120.529 kb on - strand at 120.654 kb on - strand at 120.759 kb on - strand at 120.792 kb on - strand at 120.803 kb on + strand at 120.811 kb on - strand at 120.840 kb on - strand at 120.867 kb on + strand at 120.914 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with bromate 5 mM remove 118,331 + Atu6097 0.76 -0.1 118,400 + Atu6097 0.87 +1.0 118,411 + Atu6097 0.89 -0.1 118,423 + +3.0 118,423 + -1.3 118,423 + +0.6 118,428 + -0.0 118,431 - +0.3 118,431 - +0.9 118,431 - +0.8 118,431 - -0.1 118,436 - -0.5 118,438 + -0.3 118,446 - -0.4 118,446 - -0.5 118,513 + +0.0 118,513 + -0.1 118,858 - Atu6098 0.84 +0.4 118,947 - -0.2 119,092 + +0.4 119,167 + +0.7 119,167 + +0.2 119,175 - -0.8 119,191 + -0.3 119,248 - -0.1 119,295 + +0.9 119,397 + Atu6099 0.14 +0.6 119,397 + Atu6099 0.14 -0.2 119,405 - Atu6099 0.15 -0.1 119,455 - Atu6099 0.24 -0.3 119,642 + Atu6099 0.55 -0.1 119,706 - Atu6099 0.65 -1.6 119,722 - Atu6099 0.68 +0.0 119,736 - Atu6099 0.70 -0.1 119,736 - Atu6099 0.70 +0.4 119,736 - Atu6099 0.70 +2.0 119,798 + Atu6099 0.80 -0.1 119,801 - Atu6099 0.81 +0.0 119,806 - Atu6099 0.82 +1.0 119,806 - Atu6099 0.82 +0.6 119,811 + Atu6099 0.83 -2.2 119,819 - Atu6099 0.84 +0.2 119,824 + Atu6099 0.85 +0.7 119,824 + Atu6099 0.85 +0.3 119,824 + Atu6099 0.85 -0.5 119,824 + Atu6099 0.85 +0.4 119,824 + Atu6099 0.85 +0.0 119,832 - Atu6099 0.86 +2.0 119,832 - Atu6099 0.86 -0.2 119,832 - Atu6099 0.86 +0.0 119,871 - -0.1 119,968 - Atu6100 0.10 +0.4 119,978 - Atu6100 0.13 +0.6 119,985 - Atu6100 0.14 +0.5 119,985 - Atu6100 0.14 +0.8 120,085 - Atu6100 0.39 +0.0 120,105 + Atu6100 0.44 +0.2 120,105 + Atu6100 0.44 +0.2 120,105 + Atu6100 0.44 +0.3 120,113 - Atu6100 0.46 +0.6 120,113 - Atu6100 0.46 -1.1 120,140 - Atu6100 0.53 +0.4 120,162 - Atu6100 0.58 -1.0 120,162 - Atu6100 0.58 -0.2 120,254 + Atu6100 0.81 +1.2 120,262 - Atu6100 0.83 -0.6 120,269 + Atu6100 0.85 +0.0 120,269 + Atu6100 0.85 +0.5 120,269 + Atu6100 0.85 -0.1 120,277 - Atu6100 0.87 +0.5 120,277 - Atu6100 0.87 +1.1 120,323 + -1.2 120,376 + -0.2 120,384 - +0.7 120,492 + +0.4 120,529 - -0.6 120,654 - -1.4 120,759 - -0.3 120,792 - +0.3 120,803 + -0.2 120,811 - -0.6 120,840 - -1.0 120,867 + +1.2 120,914 - -0.2
Or see this region's nucleotide sequence